Wall clock time and date at job start Mon Mar 30 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36626 * 119.67768 * 2 1 4 4 C 1.39698 * 119.91847 * 179.97438 * 3 2 1 5 5 N 1.35835 * 133.56329 * 180.02562 * 4 3 2 6 6 C 1.30080 * 109.65040 * 179.97438 * 5 4 3 7 7 C 1.50700 * 124.94934 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47027 * 269.97310 * 7 6 5 9 9 H 1.08001 * 119.99925 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00342 * 180.02562 * 8 7 6 11 11 N 1.31506 * 120.00302 * 180.02562 * 10 8 7 12 12 Si 1.86807 * 119.99583 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47074 * 90.00301 * 12 10 8 14 14 H 1.48493 * 109.46867 * 209.99827 * 12 10 8 15 15 H 1.48494 * 109.47016 * 330.00166 * 12 10 8 16 16 N 1.36093 * 110.09974 * 359.97438 * 6 5 4 17 17 C 1.46505 * 126.35041 * 179.97438 * 16 6 5 18 18 C 1.38063 * 107.30645 * 0.02562 * 16 6 5 19 19 C 1.38778 * 134.12288 * 180.02562 * 18 16 6 20 20 C 1.38101 * 119.66921 * 179.73982 * 19 18 16 21 21 F 1.35105 * 119.79875 * 180.27035 * 20 19 18 22 22 H 1.09002 * 109.47152 * 90.00138 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00239 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00219 * 1 2 3 25 25 H 1.07997 * 120.04113 * 359.95430 * 3 2 1 26 26 H 1.08993 * 109.47103 * 29.97035 * 7 6 5 27 27 H 1.09000 * 109.46819 * 149.97799 * 7 6 5 28 28 H 0.97006 * 120.00123 * 180.02562 * 11 10 8 29 29 H 1.08999 * 109.46603 * 270.02577 * 17 16 6 30 30 H 1.09002 * 109.46917 * 30.02146 * 17 16 6 31 31 H 1.08998 * 109.47286 * 150.02641 * 17 16 6 32 32 H 1.07998 * 120.16579 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1835 1.1870 0.0000 4 6 3.5805 1.1929 0.0005 5 7 4.5124 2.1811 0.0011 6 6 5.7038 1.6588 0.0020 7 6 6.9904 2.4435 0.0034 8 6 7.4208 2.7050 -1.4169 9 1 6.8224 2.3398 -2.2385 10 6 8.5787 3.4103 -1.6677 11 7 8.9540 3.6389 -2.9072 12 14 9.6134 4.0425 -0.2467 13 1 10.6163 3.0145 0.1311 14 1 10.3113 5.2870 -0.6580 15 1 8.7354 4.3284 0.9162 16 7 5.6190 0.3006 0.0026 17 6 6.7425 -0.6396 0.0032 18 6 4.2778 -0.0272 0.0015 19 6 3.5758 -1.2243 0.0019 20 6 2.1949 -1.2070 0.0058 21 9 1.5088 -2.3709 0.0117 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.6389 2.1197 -0.0007 26 1 6.8366 3.3925 0.5169 27 1 7.7634 1.8728 0.5181 28 1 9.7689 4.1348 -3.0836 29 1 7.0215 -0.8729 -1.0244 30 1 7.5922 -0.1902 0.5172 31 1 6.4499 -1.5553 0.5170 32 1 4.1067 -2.1648 0.0029 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260675344.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:06 Heat of formation + Delta-G solvation = 16.670946 kcal Electronic energy + Delta-G solvation = -17329.038526 eV Core-core repulsion = 14397.476686 eV Total energy + Delta-G solvation = -2931.561840 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.73618 -41.73884 -37.36977 -33.78930 -33.39628 -32.01822 -30.35026 -28.61005 -26.98400 -25.68658 -23.52133 -21.69940 -21.19966 -19.46024 -17.57843 -17.07314 -16.71740 -15.95838 -15.69416 -15.07882 -14.85411 -14.37612 -14.05771 -13.39417 -13.33887 -12.98306 -12.78993 -12.70588 -12.51178 -12.17514 -12.02370 -11.80435 -11.19928 -11.06660 -10.75414 -10.52856 -10.07901 -9.96712 -9.56876 -9.42731 -8.74901 -7.92669 -7.59887 -6.22832 -4.25521 1.11781 1.57823 2.97530 3.16828 3.21336 3.27555 3.28447 4.02875 4.26404 4.40844 4.54285 4.80774 4.99222 5.06018 5.09423 5.37076 5.43341 5.47060 5.58884 5.62870 5.70496 5.76018 5.95446 6.02401 6.13553 6.44035 6.47276 6.68028 6.80879 6.86219 7.14233 7.36519 7.60404 8.28538 8.48240 8.79247 9.33244 10.89557 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.041849 B = 0.005353 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.909207 B = 5229.572130 C = 5508.866536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.132 4.132 3 C -0.044 4.044 4 C 0.052 3.948 5 N -0.506 5.506 6 C 0.350 3.650 7 C 0.054 3.946 8 C -0.520 4.520 9 H 0.075 0.925 10 C 0.077 3.923 11 N -0.891 5.891 12 Si 0.876 3.124 13 H -0.274 1.274 14 H -0.282 1.282 15 H -0.262 1.262 16 N -0.492 5.492 17 C 0.083 3.917 18 C 0.052 3.948 19 C -0.137 4.137 20 C 0.094 3.906 21 F -0.142 7.142 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.135 0.865 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.268 0.732 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 -9.442 7.661 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.136 4.136 3 C -0.063 4.063 4 C -0.067 4.067 5 N -0.225 5.225 6 C 0.086 3.914 7 C 0.015 3.985 8 C -0.559 4.559 9 H 0.093 0.907 10 C -0.126 4.126 11 N -0.528 5.528 12 Si 0.702 3.298 13 H -0.200 1.200 14 H -0.208 1.208 15 H -0.186 1.186 16 N -0.181 5.181 17 C -0.059 4.059 18 C -0.059 4.059 19 C -0.159 4.159 20 C 0.073 3.927 21 F -0.120 7.120 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.153 0.847 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.460 -8.628 7.548 14.863 hybrid contribution 0.878 -0.803 0.446 1.270 sum -8.582 -9.431 7.994 15.050 Atomic orbital electron populations 1.20631 0.90183 1.02861 1.02475 1.19214 0.96676 0.91222 1.06463 1.19637 0.90265 0.97401 0.99013 1.19227 0.94071 0.88845 1.04583 1.70589 0.97365 1.29696 1.24842 1.24440 0.96731 0.78960 0.91279 1.18527 0.85019 0.94685 1.00292 1.20675 1.08783 1.36992 0.89467 0.90678 1.24900 0.97025 0.95001 0.95705 1.69872 1.24119 1.40005 1.18798 0.86841 0.80774 0.79132 0.83074 1.19965 1.20779 1.18629 1.45320 1.04402 1.07771 1.60558 1.21934 0.88038 0.92002 1.03938 1.18430 0.84681 0.95891 1.06863 1.19560 0.91897 0.96227 1.08220 1.16838 0.88593 0.80905 1.06323 1.91436 1.79575 1.46698 1.94329 0.91211 0.91191 0.91551 0.84699 0.92301 0.94656 0.92222 0.90354 0.88964 0.90691 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 9.81 36.01 0.35 -0.77 16 2 C -0.13 -1.89 5.85 -104.95 -0.61 -2.51 16 3 C -0.04 -0.71 9.66 -39.62 -0.38 -1.09 16 4 C 0.05 1.03 7.23 -84.68 -0.61 0.42 16 5 N -0.51 -11.44 11.27 -8.22 -0.09 -11.53 16 6 C 0.35 7.66 7.05 -154.80 -1.09 6.57 16 7 C 0.05 1.23 4.33 -29.03 -0.13 1.10 16 8 C -0.52 -14.12 9.65 -34.44 -0.33 -14.45 16 9 H 0.08 2.29 7.98 -52.49 -0.42 1.88 16 10 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 12 Si 0.88 19.89 27.47 -169.99 -4.67 15.22 16 13 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 16 N -0.49 -9.23 3.21 -118.50 -0.38 -9.61 16 17 C 0.08 1.19 10.96 59.85 0.66 1.84 16 18 C 0.05 0.95 6.87 -83.99 -0.58 0.37 16 19 C -0.14 -2.13 10.03 -39.43 -0.40 -2.52 16 20 C 0.09 1.40 7.23 -39.38 -0.28 1.12 16 21 F -0.14 -1.99 16.43 2.25 0.04 -1.95 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.64 8.07 -51.93 -0.42 0.23 16 24 H 0.07 0.67 7.60 -51.93 -0.39 0.27 16 25 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 26 H 0.06 1.36 7.20 -51.93 -0.37 0.99 16 27 H 0.04 0.73 6.44 -51.93 -0.33 0.39 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.24 7.00 -51.93 -0.36 0.88 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 280.38 15.07 4.23 4.23 Total: -1.00 -30.96 280.38 -7.19 -38.16 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -3.59 Total: -1.23 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -3.50 Total: -7.91 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.30 Total: -46.51 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.67 Total: 15.22 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.96 -7.19 -38.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260675344.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.826 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds