Wall clock time and date at job start Mon Mar 30 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36626 * 119.67768 * 2 1 4 4 C 1.39698 * 119.91847 * 179.97438 * 3 2 1 5 5 N 1.35835 * 133.56329 * 180.02562 * 4 3 2 6 6 C 1.30080 * 109.65040 * 179.97438 * 5 4 3 7 7 C 1.50700 * 124.94934 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47027 * 269.97310 * 7 6 5 9 9 H 1.08001 * 119.99925 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00342 * 180.02562 * 8 7 6 11 11 N 1.31506 * 120.00302 * 180.02562 * 10 8 7 12 12 Si 1.86807 * 119.99583 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47074 * 90.00301 * 12 10 8 14 14 H 1.48493 * 109.46867 * 209.99827 * 12 10 8 15 15 H 1.48494 * 109.47016 * 330.00166 * 12 10 8 16 16 N 1.36093 * 110.09974 * 359.97438 * 6 5 4 17 17 C 1.46505 * 126.35041 * 179.97438 * 16 6 5 18 18 C 1.38063 * 107.30645 * 0.02562 * 16 6 5 19 19 C 1.38778 * 134.12288 * 180.02562 * 18 16 6 20 20 C 1.38101 * 119.66921 * 179.73982 * 19 18 16 21 21 F 1.35105 * 119.79875 * 180.27035 * 20 19 18 22 22 H 1.09002 * 109.47152 * 90.00138 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00239 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00219 * 1 2 3 25 25 H 1.07997 * 120.04113 * 359.95430 * 3 2 1 26 26 H 1.08993 * 109.47103 * 29.97035 * 7 6 5 27 27 H 1.09000 * 109.46819 * 149.97799 * 7 6 5 28 28 H 0.97006 * 120.00123 * 180.02562 * 11 10 8 29 29 H 1.08999 * 109.46603 * 270.02577 * 17 16 6 30 30 H 1.09002 * 109.46917 * 30.02146 * 17 16 6 31 31 H 1.08998 * 109.47286 * 150.02641 * 17 16 6 32 32 H 1.07998 * 120.16579 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1835 1.1870 0.0000 4 6 3.5805 1.1929 0.0005 5 7 4.5124 2.1811 0.0011 6 6 5.7038 1.6588 0.0020 7 6 6.9904 2.4435 0.0034 8 6 7.4208 2.7050 -1.4169 9 1 6.8224 2.3398 -2.2385 10 6 8.5787 3.4103 -1.6677 11 7 8.9540 3.6389 -2.9072 12 14 9.6134 4.0425 -0.2467 13 1 10.6163 3.0145 0.1311 14 1 10.3113 5.2870 -0.6580 15 1 8.7354 4.3284 0.9162 16 7 5.6190 0.3006 0.0026 17 6 6.7425 -0.6396 0.0032 18 6 4.2778 -0.0272 0.0015 19 6 3.5758 -1.2243 0.0019 20 6 2.1949 -1.2070 0.0058 21 9 1.5088 -2.3709 0.0117 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.6389 2.1197 -0.0007 26 1 6.8366 3.3925 0.5169 27 1 7.7634 1.8728 0.5181 28 1 9.7689 4.1348 -3.0836 29 1 7.0215 -0.8729 -1.0244 30 1 7.5922 -0.1902 0.5172 31 1 6.4499 -1.5553 0.5170 32 1 4.1067 -2.1648 0.0029 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260675344.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:06 Heat of formation + Delta-G solvation = -1.621758 kcal Electronic energy + Delta-G solvation = -17329.831758 eV Core-core repulsion = 14397.476686 eV Total energy + Delta-G solvation = -2932.355071 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.90863 -43.14845 -38.63285 -35.37066 -35.14718 -33.38340 -32.01373 -29.93268 -28.28451 -26.97354 -25.23017 -23.13590 -22.47109 -20.96600 -19.12079 -18.85714 -18.08400 -17.20402 -16.99095 -16.48484 -16.22879 -16.01294 -15.32676 -15.01924 -14.39734 -14.32286 -14.13017 -14.10184 -13.81646 -13.59532 -13.36980 -12.93122 -12.75289 -12.47007 -12.37373 -12.11934 -11.76925 -11.52758 -11.34189 -10.93516 -10.82169 -9.19983 -9.00524 -8.33356 -6.42815 -0.19926 0.32247 1.38969 1.43754 1.54495 1.62176 1.76068 2.34306 2.66680 3.00098 3.15506 3.27138 3.55586 3.82535 3.90876 4.13528 4.25430 4.31209 4.35273 4.56797 4.65064 4.78235 4.82084 4.84696 4.86868 4.95676 5.18175 5.24784 5.38541 5.41560 5.53725 5.85172 6.06302 6.23191 6.60780 6.97152 7.20471 8.83139 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.041849 B = 0.005353 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.909207 B = 5229.572130 C = 5508.866536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.122 4.122 3 C -0.052 4.052 4 C 0.013 3.987 5 N -0.540 5.540 6 C 0.319 3.681 7 C 0.063 3.937 8 C -0.525 4.525 9 H 0.020 0.980 10 C 0.018 3.982 11 N -0.944 5.944 12 Si 0.951 3.049 13 H -0.252 1.252 14 H -0.284 1.284 15 H -0.243 1.243 16 N -0.490 5.490 17 C 0.074 3.926 18 C 0.040 3.960 19 C -0.136 4.136 20 C 0.100 3.900 21 F -0.132 7.132 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.149 0.851 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.271 0.729 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.193 -10.893 9.665 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.125 4.125 3 C -0.071 4.071 4 C -0.105 4.105 5 N -0.260 5.260 6 C 0.054 3.946 7 C 0.024 3.976 8 C -0.564 4.564 9 H 0.038 0.962 10 C -0.180 4.180 11 N -0.583 5.583 12 Si 0.773 3.227 13 H -0.176 1.176 14 H -0.210 1.210 15 H -0.167 1.167 16 N -0.178 5.178 17 C -0.067 4.067 18 C -0.070 4.070 19 C -0.158 4.158 20 C 0.079 3.921 21 F -0.111 7.111 22 H 0.101 0.899 23 H 0.105 0.895 24 H 0.096 0.904 25 H 0.166 0.834 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.165 -10.121 9.561 17.239 hybrid contribution 0.892 -0.468 -0.269 1.042 sum -9.273 -10.589 9.293 16.866 Atomic orbital electron populations 1.20747 0.87297 1.04337 1.03705 1.19598 0.98652 0.90229 1.04048 1.19889 0.89128 0.98898 0.99199 1.19701 0.95306 0.88975 1.06567 1.70430 0.98456 1.31751 1.25408 1.24102 0.96204 0.80532 0.93759 1.18309 0.86538 0.95317 0.97444 1.20764 1.08301 1.36865 0.90469 0.96163 1.25904 0.98374 0.94919 0.98817 1.70038 1.25117 1.41406 1.21703 0.85650 0.79065 0.78636 0.79355 1.17639 1.20988 1.16675 1.45430 1.05590 1.07190 1.59625 1.22255 0.87329 0.92760 1.04333 1.18701 0.84480 0.96437 1.07390 1.19801 0.92260 0.96283 1.07416 1.16962 0.88590 0.81407 1.05101 1.91469 1.79294 1.46185 1.94107 0.89950 0.89459 0.90426 0.83378 0.92655 0.91793 0.91973 0.90867 0.88168 0.86927 0.82634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 9.81 71.24 0.70 -1.19 16 2 C -0.12 -3.21 5.85 -20.08 -0.12 -3.32 16 3 C -0.05 -1.63 9.66 22.25 0.21 -1.42 16 4 C 0.01 0.54 7.23 39.44 0.29 0.82 16 5 N -0.54 -25.16 11.27 -179.91 -2.03 -27.19 16 6 C 0.32 14.27 7.05 137.91 0.97 15.24 16 7 C 0.06 2.89 4.33 29.10 0.13 3.01 16 8 C -0.53 -29.59 9.65 25.60 0.25 -29.34 16 9 H 0.02 1.31 7.98 -2.91 -0.02 1.29 16 10 C 0.02 1.02 5.47 84.66 0.46 1.48 16 11 N -0.94 -57.29 13.96 21.45 0.30 -56.99 16 12 Si 0.95 40.72 27.47 68.60 1.88 42.61 16 13 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 14 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 16 N -0.49 -18.29 3.21 -528.81 -1.70 -19.98 16 17 C 0.07 2.01 10.96 127.77 1.40 3.41 16 18 C 0.04 1.45 6.87 38.85 0.27 1.71 16 19 C -0.14 -3.92 10.03 22.37 0.22 -3.69 16 20 C 0.10 2.72 7.23 22.40 0.16 2.88 16 21 F -0.13 -3.26 16.43 44.97 0.74 -2.52 16 22 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.09 1.31 8.07 -2.39 -0.02 1.29 16 24 H 0.08 1.27 7.60 -2.38 -0.02 1.25 16 25 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 26 H 0.06 2.56 7.20 -2.39 -0.02 2.54 16 27 H 0.06 2.54 6.44 -2.39 -0.02 2.53 16 28 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.10 2.53 7.00 -2.39 -0.02 2.51 16 31 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -70.38 280.38 5.22 -65.16 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 1.08 Total: 9.32 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 4.94 Total: -10.41 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -3.43 Total: -104.16 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.74 Total: -2.52 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.88 Total: 42.61 kcal Total: -70.38 5.22 -65.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260675344.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.540 kcal (2) G-P(sol) polarization free energy of solvation -70.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds