Wall clock time and date at job start Mon Mar 30 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 13 13 N 1.30114 * 124.95385 * 224.69376 * 12 2 1 14 14 C 1.35779 * 109.65699 * 179.89047 * 13 12 2 15 15 C 1.39805 * 133.58477 * 180.10629 * 14 13 12 16 16 C 1.36583 * 119.93515 * 180.30997 * 15 14 13 17 17 C 1.38781 * 120.68639 * 359.95605 * 16 15 14 18 18 C 1.38044 * 120.41636 * 0.04627 * 17 16 15 19 19 F 1.35103 * 120.17292 * 179.97438 * 18 17 16 20 20 C 1.39025 * 119.65657 * 359.97422 * 18 17 16 21 21 N 1.36002 * 124.95093 * 45.00413 * 12 2 1 22 22 H 0.96998 * 126.35426 * 359.97438 * 21 12 2 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 30 30 H 1.08008 * 120.02872 * 0.30798 * 15 14 13 31 31 H 1.07997 * 119.65528 * 179.97438 * 16 15 14 32 32 H 1.07994 * 119.78587 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5441 4.4119 10 1 1.3445 -0.9491 5.1123 11 1 2.4880 -2.5654 3.7121 12 6 2.0323 -0.7105 -1.2305 13 7 2.9956 -1.5851 -1.2453 14 6 3.1904 -2.0285 -2.5137 15 6 4.0717 -2.9494 -3.0881 16 6 4.0300 -3.1853 -4.4328 17 6 3.1186 -2.5199 -5.2407 18 6 2.2387 -1.6062 -4.6961 19 9 1.3539 -0.9609 -5.4872 20 6 2.2677 -1.3537 -3.3293 21 7 1.5489 -0.5265 -2.4883 22 1 0.8326 0.0743 -2.7469 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 0.7082 1.1608 3.4844 30 1 4.7848 -3.4737 -2.4691 31 1 4.7131 -3.8973 -4.8718 32 1 3.0980 -2.7179 -6.3021 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260678066.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:34 Heat of formation + Delta-G solvation = 0.732207 kcal Electronic energy + Delta-G solvation = -17766.412593 eV Core-core repulsion = 14834.159597 eV Total energy + Delta-G solvation = -2932.252996 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.93757 -43.07289 -38.57361 -36.84748 -33.95318 -33.20510 -30.58822 -29.91266 -27.73503 -27.18281 -24.46985 -23.54332 -22.59272 -20.93285 -19.28711 -18.59916 -17.70441 -17.08332 -16.96541 -16.66214 -16.36335 -15.76094 -15.58137 -15.01902 -14.61378 -14.19733 -13.79061 -13.29240 -13.06135 -12.85303 -12.81636 -12.64311 -12.56552 -12.39525 -12.21537 -11.84131 -11.81692 -11.47784 -11.10275 -10.70156 -10.41618 -9.34459 -9.02028 -8.05191 -6.16265 -0.12376 0.44573 1.44864 1.47024 1.56672 1.83428 1.90911 2.49378 2.80954 3.20979 3.21067 3.33311 3.74885 3.96929 4.32932 4.36491 4.40608 4.61385 4.75297 4.81181 4.84254 4.93575 5.12161 5.18542 5.25441 5.43782 5.46354 5.55646 5.67396 5.89472 5.93520 6.06135 6.29683 6.45425 6.87142 7.11019 7.50652 8.96493 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.034474 B = 0.006532 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.021272 B = 4285.853096 C = 4885.878107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.126 3.874 3 C -0.119 4.119 4 C -0.510 4.510 5 H 0.056 0.944 6 C 0.027 3.973 7 N -0.905 5.905 8 Si 0.951 3.049 9 H -0.279 1.279 10 H -0.280 1.280 11 H -0.279 1.279 12 C 0.330 3.670 13 N -0.525 5.525 14 C 0.040 3.960 15 C -0.090 4.090 16 C -0.089 4.089 17 C -0.131 4.131 18 C 0.088 3.912 19 F -0.147 7.147 20 C -0.019 4.019 21 N -0.592 5.592 22 H 0.429 0.571 23 H 0.038 0.962 24 H 0.082 0.918 25 H 0.024 0.976 26 H 0.082 0.918 27 H 0.021 0.979 28 H 0.034 0.966 29 H 0.263 0.737 30 H 0.142 0.858 31 H 0.181 0.819 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 -4.223 -13.724 14.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.124 3.876 3 C -0.178 4.178 4 C -0.549 4.549 5 H 0.074 0.926 6 C -0.172 4.172 7 N -0.544 5.544 8 Si 0.777 3.223 9 H -0.205 1.205 10 H -0.205 1.205 11 H -0.204 1.204 12 C 0.063 3.937 13 N -0.244 5.244 14 C -0.080 4.080 15 C -0.110 4.110 16 C -0.109 4.109 17 C -0.151 4.151 18 C 0.066 3.934 19 F -0.125 7.125 20 C -0.130 4.130 21 N -0.203 5.203 22 H 0.269 0.731 23 H 0.057 0.943 24 H 0.100 0.900 25 H 0.043 0.957 26 H 0.100 0.900 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.160 0.840 31 H 0.199 0.801 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.792 -4.399 -12.916 13.927 hybrid contribution -0.835 0.522 0.273 1.022 sum 1.957 -3.877 -12.643 13.368 Atomic orbital electron populations 1.21748 0.95407 0.99436 1.01673 1.17095 0.93289 0.91907 0.85311 1.21700 0.98409 0.96292 1.01349 1.21182 1.31272 1.12399 0.90021 0.92562 1.25431 0.95201 0.95721 1.00873 1.69853 1.37204 1.23383 1.23939 0.85667 0.78122 0.78884 0.79584 1.20484 1.20508 1.20426 1.24615 0.89811 0.93009 0.86271 1.70600 1.18826 1.14964 1.20038 1.19826 0.98622 1.00372 0.89178 1.20427 0.97898 0.96501 0.96150 1.20884 0.98801 1.00010 0.91217 1.21282 0.95249 0.95965 1.02626 1.16864 0.94248 0.98914 0.83381 1.91449 1.67119 1.80531 1.73439 1.19245 1.00477 1.00501 0.92728 1.43186 1.33161 1.37107 1.06844 0.73129 0.94285 0.89977 0.95708 0.89974 0.95986 0.94690 0.92744 0.84023 0.80134 0.80679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.11 71.98 0.58 -4.98 16 2 C 0.13 6.08 0.72 -53.67 -0.04 6.04 16 3 C -0.12 -5.49 8.23 71.98 0.59 -4.90 16 4 C -0.51 -27.83 7.88 25.60 0.20 -27.63 16 5 H 0.06 3.26 6.97 -2.91 -0.02 3.24 16 6 C 0.03 1.43 5.15 84.66 0.44 1.86 16 7 N -0.90 -47.83 9.35 21.45 0.20 -47.63 16 8 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 C 0.33 14.98 6.39 137.93 0.88 15.86 16 13 N -0.52 -24.92 10.06 -179.99 -1.81 -26.73 16 14 C 0.04 1.57 7.23 39.45 0.29 1.85 16 15 C -0.09 -2.66 10.05 22.26 0.22 -2.44 16 16 C -0.09 -1.85 9.96 22.01 0.22 -1.63 16 17 C -0.13 -2.86 10.01 22.35 0.22 -2.64 16 18 C 0.09 2.60 7.32 22.41 0.16 2.76 16 19 F -0.15 -4.22 17.27 44.97 0.78 -3.44 16 20 C -0.02 -0.68 7.29 38.87 0.28 -0.39 16 21 N -0.59 -22.54 6.04 -179.10 -1.08 -23.62 16 22 H 0.43 13.90 8.43 -92.71 -0.78 13.11 16 23 H 0.04 1.45 7.59 -2.39 -0.02 1.43 16 24 H 0.08 4.00 6.07 -2.39 -0.01 3.99 16 25 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.08 4.08 6.07 -2.39 -0.01 4.06 16 27 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 30 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.18 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.18 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -62.40 273.96 4.54 -57.86 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.37 Total: 14.23 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 4.06 Total: -16.23 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -2.69 Total: -97.98 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.78 Total: -3.44 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -62.40 4.54 -57.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260678066.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.592 kcal (2) G-P(sol) polarization free energy of solvation -62.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds