Wall clock time and date at job start Mon Mar 30 2020 06:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00355 * 2 1 4 4 H 1.48500 * 109.47152 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47247 * 240.00431 * 3 2 1 6 6 H 1.48503 * 109.46935 * 120.00369 * 3 2 1 7 7 C 1.37881 * 119.99491 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99785 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00314 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47243 * 180.02562 * 9 7 2 11 11 C 1.38169 * 120.02690 * 265.00213 * 10 9 7 12 12 C 1.38239 * 120.05379 * 180.02562 * 11 10 9 13 13 C 1.38284 * 120.11201 * 359.97438 * 12 11 10 14 14 C 1.38116 * 120.05725 * 0.02562 * 13 12 11 15 15 C 1.38705 * 120.02805 * 84.72009 * 10 9 7 16 16 O 1.35901 * 120.05794 * 0.02562 * 15 10 9 17 17 C 1.42894 * 117.00173 * 174.52558 * 16 15 10 18 18 H 1.08996 * 110.43724 * 321.72396 * 17 16 15 19 19 C 1.54816 * 110.48621 * 199.04015 * 17 16 15 20 20 C 1.55003 * 102.09176 * 220.44213 * 19 17 16 21 21 O 1.44376 * 103.48724 * 37.02500 * 20 19 17 22 22 C 1.43749 * 106.98005 * 319.93825 * 21 20 19 23 23 H 0.96996 * 120.00660 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47308 * 300.00210 * 9 7 2 25 25 H 1.08998 * 109.46888 * 60.00095 * 9 7 2 26 26 H 1.08004 * 119.97268 * 359.96920 * 11 10 9 27 27 H 1.07999 * 119.94136 * 179.97438 * 12 11 10 28 28 H 1.08004 * 119.97122 * 180.02562 * 13 12 11 29 29 H 1.08003 * 120.02715 * 179.97438 * 14 13 12 30 30 H 1.08995 * 110.90920 * 338.63888 * 19 17 16 31 31 H 1.09001 * 110.91004 * 102.24643 * 19 17 16 32 32 H 1.08996 * 110.61558 * 278.52621 * 20 19 17 33 33 H 1.09001 * 110.74898 * 155.58884 * 20 19 17 34 34 H 1.08999 * 109.87562 * 267.09639 * 22 21 20 35 35 H 1.08991 * 109.87965 * 145.94078 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1029 1.6963 -1.2126 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2301 -3.6447 -0.0005 11 6 2.6002 -4.2380 -1.1922 12 6 3.4980 -5.2891 -1.1928 13 6 4.0283 -5.7492 -0.0015 14 6 3.6616 -5.1596 1.1924 15 6 2.7651 -4.1005 1.1953 16 8 2.4068 -3.5153 2.3683 17 6 2.9020 -4.1115 3.5687 18 1 2.9002 -5.1981 3.4828 19 6 2.0586 -3.6600 4.7859 20 6 3.1447 -3.4385 5.8693 21 8 4.2525 -2.8848 5.1273 22 6 4.3208 -3.5974 3.8807 23 1 -0.4851 -0.8400 0.0004 24 1 0.6245 -2.5571 0.8896 25 1 0.6239 -2.5567 -0.8903 26 1 2.1869 -3.8808 -2.1240 27 1 3.7856 -5.7518 -2.1253 28 1 4.7299 -6.5703 -0.0046 29 1 4.0758 -5.5195 2.1226 30 1 1.5297 -2.7318 4.5699 31 1 1.3617 -4.4419 5.0879 32 1 3.4262 -4.3854 6.3298 33 1 2.7982 -2.7335 6.6250 34 1 5.0080 -4.4386 3.9719 35 1 4.6548 -2.9274 3.0886 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260705389.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:20 Heat of formation + Delta-G solvation = -66.806045 kcal Electronic energy + Delta-G solvation = -18125.180512 eV Core-core repulsion = 15281.166392 eV Total energy + Delta-G solvation = -2844.014120 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.23422 -38.72176 -36.61525 -33.74166 -31.65486 -31.04866 -29.39075 -28.75924 -26.51168 -23.22172 -23.11820 -22.38953 -20.79705 -20.41444 -17.86713 -16.74168 -16.55056 -16.25463 -15.36242 -15.04708 -14.66208 -14.21471 -13.96426 -13.66373 -13.05878 -12.88879 -12.69427 -12.29683 -12.19031 -11.66495 -11.55598 -11.49552 -11.15911 -10.89993 -10.68209 -10.56308 -10.41563 -10.08757 -9.76592 -9.65205 -8.92700 -8.28412 -8.16917 -7.47064 -6.28982 -3.98236 1.87079 1.99754 3.48571 3.51143 3.51724 3.69351 3.91171 4.29379 4.47348 4.62638 4.81909 4.88864 5.05431 5.20565 5.23429 5.30769 5.45681 5.48424 5.58999 5.60877 5.66871 5.84709 5.89886 6.01935 6.11179 6.23360 6.58489 6.70625 6.80703 6.86637 7.05875 7.21346 7.40643 7.60536 7.98524 8.22109 8.51807 8.92766 9.71024 11.09942 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.009098 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.665999 B = 3076.928775 C = 4377.442705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.016 3.984 3 Si 1.067 2.933 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.581 4.581 8 H 0.047 0.953 9 C 0.045 3.955 10 C -0.058 4.058 11 C -0.092 4.092 12 C -0.157 4.157 13 C -0.110 4.110 14 C -0.214 4.214 15 C 0.121 3.879 16 O -0.278 6.278 17 C 0.051 3.949 18 H 0.081 0.919 19 C -0.150 4.150 20 C 0.048 3.952 21 O -0.371 6.371 22 C 0.026 3.974 23 H 0.268 0.732 24 H 0.024 0.976 25 H 0.016 0.984 26 H 0.124 0.876 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 -11.604 7.039 14.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.187 4.187 3 Si 0.896 3.104 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.619 4.619 8 H 0.065 0.935 9 C 0.008 3.992 10 C -0.059 4.059 11 C -0.110 4.110 12 C -0.176 4.176 13 C -0.128 4.128 14 C -0.233 4.233 15 C 0.076 3.924 16 O -0.191 6.191 17 C -0.007 4.007 18 H 0.099 0.901 19 C -0.188 4.188 20 C -0.028 4.028 21 O -0.290 6.290 22 C -0.051 4.051 23 H 0.078 0.922 24 H 0.042 0.958 25 H 0.035 0.965 26 H 0.142 0.858 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.210 -9.610 7.145 13.489 hybrid contribution 0.346 -2.139 -0.050 2.168 sum 6.556 -11.749 7.095 15.211 Atomic orbital electron populations 1.70776 1.06811 1.30472 1.46996 1.25802 0.96521 1.02458 0.93891 0.83568 0.74926 0.75362 0.76589 1.20770 1.21472 1.21377 1.21824 0.94079 0.90808 1.55208 0.93459 1.18302 0.93004 0.90928 0.96956 1.19905 0.99043 0.97467 0.89494 1.20927 0.97372 0.95317 0.97351 1.20945 1.00063 0.99018 0.97531 1.20659 1.00147 0.99890 0.92140 1.21101 1.03189 1.00184 0.98844 1.18881 0.94927 0.92543 0.86078 1.86398 1.69536 1.51991 1.11174 1.23733 0.93810 0.97674 0.85462 0.90072 1.23201 0.98494 1.04325 0.92781 1.23538 0.85694 0.98966 0.94642 1.88911 1.51012 1.59616 1.29466 1.23804 0.96234 0.97236 0.87839 0.92186 0.95804 0.96544 0.85844 0.86774 0.86830 0.86537 0.88316 0.89386 0.92156 0.88398 0.91873 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.39 13.65 55.43 0.76 -27.63 16 2 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 3 Si 1.07 26.22 29.90 -169.99 -5.08 21.14 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.58 -17.02 9.09 -34.44 -0.31 -17.34 16 8 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 9 C 0.04 1.19 4.13 -29.04 -0.12 1.07 16 10 C -0.06 -1.32 5.08 -104.47 -0.53 -1.86 16 11 C -0.09 -1.80 9.68 -39.61 -0.38 -2.19 16 12 C -0.16 -2.60 10.04 -39.56 -0.40 -2.99 16 13 C -0.11 -1.72 10.04 -39.61 -0.40 -2.11 16 14 C -0.21 -3.60 8.75 -39.44 -0.34 -3.94 16 15 C 0.12 2.47 6.59 -39.22 -0.26 2.22 16 16 O -0.28 -5.74 8.91 -19.43 -0.17 -5.91 16 17 C 0.05 0.78 2.90 -25.20 -0.07 0.70 16 18 H 0.08 1.06 6.57 -51.93 -0.34 0.72 16 19 C -0.15 -1.99 6.90 -24.72 -0.17 -2.16 16 20 C 0.05 0.57 7.72 38.22 0.29 0.86 16 21 O -0.37 -5.81 11.52 -35.23 -0.41 -6.21 16 22 C 0.03 0.39 6.66 37.73 0.25 0.64 16 23 H 0.27 8.27 7.22 -40.82 -0.29 7.97 16 24 H 0.02 0.67 7.56 -51.93 -0.39 0.28 16 25 H 0.02 0.45 7.92 -51.93 -0.41 0.03 16 26 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 27 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 29 H 0.12 1.62 5.69 -52.48 -0.30 1.32 16 30 H 0.10 1.53 8.09 -51.93 -0.42 1.11 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 35 H 0.10 1.70 7.97 -51.93 -0.41 1.28 16 LS Contribution 293.78 15.07 4.43 4.43 Total: -1.00 -33.12 293.78 -7.75 -40.87 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.73 Total: 0.03 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -2.54 Total: -26.71 kcal Atomic # 7 Polarization: -28.39 SS G_CDS: 0.76 Total: -27.63 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.58 Total: -12.12 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: -5.08 Total: 21.14 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.12 -7.75 -40.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705389.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.937 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds