Wall clock time and date at job start Mon Mar 30 2020 06:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00355 * 2 1 4 4 H 1.48500 * 109.47152 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47247 * 240.00431 * 3 2 1 6 6 H 1.48503 * 109.46935 * 120.00369 * 3 2 1 7 7 C 1.37881 * 119.99491 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99785 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00314 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47243 * 180.02562 * 9 7 2 11 11 C 1.38169 * 120.02690 * 265.00213 * 10 9 7 12 12 C 1.38239 * 120.05379 * 180.02562 * 11 10 9 13 13 C 1.38284 * 120.11201 * 359.97438 * 12 11 10 14 14 C 1.38116 * 120.05725 * 0.02562 * 13 12 11 15 15 C 1.38705 * 120.02805 * 84.72009 * 10 9 7 16 16 O 1.35901 * 120.05794 * 0.02562 * 15 10 9 17 17 C 1.42894 * 117.00173 * 174.52558 * 16 15 10 18 18 H 1.08996 * 110.43724 * 321.72396 * 17 16 15 19 19 C 1.54816 * 110.48621 * 199.04015 * 17 16 15 20 20 C 1.55003 * 102.09176 * 220.44213 * 19 17 16 21 21 O 1.44376 * 103.48724 * 37.02500 * 20 19 17 22 22 C 1.43749 * 106.98005 * 319.93825 * 21 20 19 23 23 H 0.96996 * 120.00660 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47308 * 300.00210 * 9 7 2 25 25 H 1.08998 * 109.46888 * 60.00095 * 9 7 2 26 26 H 1.08004 * 119.97268 * 359.96920 * 11 10 9 27 27 H 1.07999 * 119.94136 * 179.97438 * 12 11 10 28 28 H 1.08004 * 119.97122 * 180.02562 * 13 12 11 29 29 H 1.08003 * 120.02715 * 179.97438 * 14 13 12 30 30 H 1.08995 * 110.90920 * 338.63888 * 19 17 16 31 31 H 1.09001 * 110.91004 * 102.24643 * 19 17 16 32 32 H 1.08996 * 110.61558 * 278.52621 * 20 19 17 33 33 H 1.09001 * 110.74898 * 155.58884 * 20 19 17 34 34 H 1.08999 * 109.87562 * 267.09639 * 22 21 20 35 35 H 1.08991 * 109.87965 * 145.94078 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1029 1.6963 -1.2126 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2301 -3.6447 -0.0005 11 6 2.6002 -4.2380 -1.1922 12 6 3.4980 -5.2891 -1.1928 13 6 4.0283 -5.7492 -0.0015 14 6 3.6616 -5.1596 1.1924 15 6 2.7651 -4.1005 1.1953 16 8 2.4068 -3.5153 2.3683 17 6 2.9020 -4.1115 3.5687 18 1 2.9002 -5.1981 3.4828 19 6 2.0586 -3.6600 4.7859 20 6 3.1447 -3.4385 5.8693 21 8 4.2525 -2.8848 5.1273 22 6 4.3208 -3.5974 3.8807 23 1 -0.4851 -0.8400 0.0004 24 1 0.6245 -2.5571 0.8896 25 1 0.6239 -2.5567 -0.8903 26 1 2.1869 -3.8808 -2.1240 27 1 3.7856 -5.7518 -2.1253 28 1 4.7299 -6.5703 -0.0046 29 1 4.0758 -5.5195 2.1226 30 1 1.5297 -2.7318 4.5699 31 1 1.3617 -4.4419 5.0879 32 1 3.4262 -4.3854 6.3298 33 1 2.7982 -2.7335 6.6250 34 1 5.0080 -4.4386 3.9719 35 1 4.6548 -2.9274 3.0886 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260705389.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:20 Heat of formation + Delta-G solvation = -88.263430 kcal Electronic energy + Delta-G solvation = -18126.110974 eV Core-core repulsion = 15281.166392 eV Total energy + Delta-G solvation = -2844.944582 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.54539 -39.97203 -37.98536 -35.83843 -33.15709 -32.47878 -30.77581 -29.90065 -28.41040 -25.25457 -24.36214 -23.58947 -22.26326 -21.76083 -19.32323 -18.78283 -17.67814 -17.52548 -16.71073 -16.39544 -15.89632 -15.67471 -15.63990 -15.29376 -14.92453 -14.24273 -14.03012 -13.83182 -13.45089 -13.29309 -13.08818 -13.00104 -12.57902 -12.51372 -12.17294 -12.02645 -11.92629 -11.78699 -11.40321 -11.00348 -10.75102 -10.58310 -9.69228 -9.03105 -8.63768 -6.38923 0.45614 0.58022 1.46705 1.56041 1.75508 2.24726 2.52395 2.85240 2.92265 3.13253 3.35416 3.72677 3.80399 3.97527 4.01029 4.07124 4.21866 4.26032 4.37840 4.49840 4.59978 4.63720 4.72216 4.76920 4.83462 4.94985 4.99184 5.03761 5.21454 5.46630 5.57623 5.72999 5.78419 5.92386 6.00414 6.14223 6.52397 6.64392 7.39383 8.69495 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.009098 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.665999 B = 3076.928775 C = 4377.442705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.037 4.037 3 Si 1.114 2.886 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.276 1.276 7 C -0.590 4.590 8 H 0.037 0.963 9 C 0.057 3.943 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.152 4.152 13 C -0.093 4.093 14 C -0.207 4.207 15 C 0.105 3.895 16 O -0.319 6.319 17 C 0.040 3.960 18 H 0.112 0.888 19 C -0.152 4.152 20 C 0.050 3.950 21 O -0.400 6.400 22 C 0.029 3.971 23 H 0.254 0.746 24 H -0.008 1.008 25 H -0.005 1.005 26 H 0.117 0.883 27 H 0.152 0.848 28 H 0.163 0.837 29 H 0.151 0.849 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.963 -13.869 7.811 18.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.234 4.234 3 Si 0.935 3.065 4 H -0.202 1.202 5 H -0.191 1.191 6 H -0.202 1.202 7 C -0.628 4.628 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.122 4.122 12 C -0.170 4.170 13 C -0.110 4.110 14 C -0.225 4.225 15 C 0.060 3.940 16 O -0.234 6.234 17 C -0.016 4.016 18 H 0.130 0.870 19 C -0.190 4.190 20 C -0.025 4.025 21 O -0.320 6.320 22 C -0.048 4.048 23 H 0.063 0.937 24 H 0.010 0.990 25 H 0.014 0.986 26 H 0.136 0.864 27 H 0.169 0.831 28 H 0.181 0.819 29 H 0.169 0.831 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.790 -11.902 7.917 16.782 hybrid contribution -0.442 -1.552 -0.250 1.633 sum 8.348 -13.455 7.667 17.593 Atomic orbital electron populations 1.70902 1.07714 1.29648 1.49032 1.27374 0.96650 1.06453 0.92882 0.82989 0.74253 0.71379 0.77884 1.20221 1.19099 1.20175 1.22120 0.93727 0.92462 1.54511 0.94458 1.17977 0.93356 0.92475 0.94221 1.19725 1.00913 0.98259 0.92218 1.21022 0.98530 0.96598 0.96075 1.21326 0.98358 0.97420 0.99867 1.21265 0.99109 0.99774 0.90872 1.21466 1.01538 0.98419 1.01111 1.19055 0.95862 0.93746 0.85361 1.86346 1.70587 1.53730 1.12700 1.24147 0.94300 0.99177 0.83990 0.87017 1.23278 0.99270 1.03541 0.92888 1.23786 0.83909 1.00960 0.93890 1.88869 1.52315 1.60883 1.29899 1.23784 0.96610 0.97460 0.86914 0.93677 0.99012 0.98643 0.86449 0.83065 0.81941 0.83110 0.91940 0.86452 0.88478 0.87203 0.88193 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.82 13.65 21.45 0.29 -60.53 16 2 C -0.04 -2.25 5.46 84.66 0.46 -1.79 16 3 Si 1.11 53.78 29.90 68.60 2.05 55.83 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.59 -36.43 9.09 25.60 0.23 -36.20 16 8 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 9 C 0.06 3.24 4.13 29.10 0.12 3.36 16 10 C -0.11 -5.22 5.08 -19.77 -0.10 -5.32 16 11 C -0.10 -4.13 9.68 22.25 0.22 -3.92 16 12 C -0.15 -4.54 10.04 22.28 0.22 -4.31 16 13 C -0.09 -2.45 10.04 22.25 0.22 -2.22 16 14 C -0.21 -6.30 8.75 22.36 0.20 -6.11 16 15 C 0.10 4.32 6.59 22.50 0.15 4.47 16 16 O -0.32 -13.63 8.91 -92.44 -0.82 -14.45 16 17 C 0.04 1.18 2.90 31.59 0.09 1.28 16 18 H 0.11 2.53 6.57 -2.39 -0.02 2.52 16 19 C -0.15 -3.92 6.90 31.90 0.22 -3.70 16 20 C 0.05 1.07 7.72 72.67 0.56 1.63 16 21 O -0.40 -12.03 11.52 -148.98 -1.72 -13.74 16 22 C 0.03 0.83 6.66 72.35 0.48 1.32 16 23 H 0.25 16.76 7.22 -92.71 -0.67 16.09 16 24 H -0.01 -0.52 7.56 -2.39 -0.02 -0.53 16 25 H 0.00 -0.28 7.92 -2.39 -0.02 -0.29 16 26 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 27 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 28 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 29 H 0.15 3.47 5.69 -2.91 -0.02 3.45 16 30 H 0.06 2.05 8.09 -2.39 -0.02 2.03 16 31 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.10 2.07 8.06 -2.39 -0.02 2.05 16 35 H 0.06 2.25 7.97 -2.39 -0.02 2.24 16 Total: -1.00 -77.79 293.78 4.05 -73.73 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.17 Total: 10.68 kcal Atomic # 6 Polarization: -54.60 SS G_CDS: 3.08 Total: -51.52 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.29 Total: -60.53 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -2.54 Total: -28.19 kcal Atomic # 14 Polarization: 53.78 SS G_CDS: 2.05 Total: 55.83 kcal Total: -77.79 4.05 -73.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705389.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.529 kcal (2) G-P(sol) polarization free energy of solvation -77.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds