Wall clock time and date at job start Mon Mar 30 2020 06:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99932 * 2 1 4 4 H 1.48504 * 109.47163 * 239.99662 * 3 2 1 5 5 H 1.48506 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47367 * 120.00059 * 3 2 1 7 7 C 1.37873 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00289 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00211 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47210 * 179.97438 * 9 7 2 11 11 C 1.38161 * 120.02902 * 265.02153 * 10 9 7 12 12 C 1.38242 * 120.05469 * 179.97438 * 11 10 9 13 13 C 1.38286 * 120.11556 * 0.02562 * 12 11 10 14 14 C 1.38129 * 120.05295 * 359.67579 * 13 12 11 15 15 C 1.38718 * 120.02567 * 85.00121 * 10 9 7 16 16 O 1.35901 * 120.05778 * 0.02562 * 15 10 9 17 17 C 1.42894 * 117.00124 * 185.49157 * 16 15 10 18 18 H 1.09004 * 110.43742 * 38.27021 * 17 16 15 19 19 C 1.54813 * 110.48856 * 160.95707 * 17 16 15 20 20 C 1.54997 * 102.09204 * 139.55790 * 19 17 16 21 21 O 1.44385 * 103.48865 * 322.97733 * 20 19 17 22 22 C 1.43744 * 106.97722 * 40.05934 * 21 20 19 23 23 H 0.96996 * 119.99991 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46895 * 59.99385 * 9 7 2 25 25 H 1.08999 * 109.46431 * 299.99960 * 9 7 2 26 26 H 1.07997 * 119.97437 * 359.95194 * 11 10 9 27 27 H 1.08004 * 119.94176 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.97473 * 179.97438 * 13 12 11 29 29 H 1.08000 * 120.03052 * 180.32443 * 14 13 12 30 30 H 1.09000 * 110.90704 * 257.75387 * 19 17 16 31 31 H 1.08997 * 110.90398 * 21.32818 * 19 17 16 32 32 H 1.08999 * 110.61525 * 204.47776 * 20 19 17 33 33 H 1.09001 * 110.61806 * 81.47371 * 20 19 17 34 34 H 1.09004 * 109.87877 * 92.90733 * 22 21 20 35 35 H 1.08997 * 109.88009 * 213.90996 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.6008 -4.2375 -1.1911 12 6 3.4996 -5.2879 -1.1918 13 6 4.0297 -5.7483 -0.0004 14 6 3.6673 -5.1548 1.1931 15 6 2.7611 -4.1041 1.1970 16 8 2.3982 -3.5226 2.3705 17 6 3.0731 -3.9650 3.5497 18 1 4.1268 -4.1484 3.3391 19 6 2.9179 -2.9246 4.6855 20 6 2.6896 -3.8278 5.9243 21 8 1.8856 -4.9104 5.4082 22 6 2.4055 -5.2366 4.1083 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 2.1877 -3.8804 -2.1228 27 1 3.7876 -5.7504 -2.1243 28 1 4.7314 -6.5693 -0.0035 29 1 4.0856 -5.5112 2.1228 30 1 3.8263 -2.3328 4.7978 31 1 2.0560 -2.2813 4.5085 32 1 2.1502 -3.2853 6.7007 33 1 3.6392 -4.2031 6.3059 34 1 3.1424 -6.0352 4.1936 35 1 1.5934 -5.5503 3.4524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260705392.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:23 Heat of formation + Delta-G solvation = -63.380274 kcal Electronic energy + Delta-G solvation = -18049.845634 eV Core-core repulsion = 15205.980067 eV Total energy + Delta-G solvation = -2843.865568 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.17694 -38.67317 -36.54625 -33.42729 -31.62943 -31.07410 -29.33387 -28.76073 -26.86474 -23.31086 -23.11131 -22.31901 -20.67227 -20.24933 -17.75276 -16.56109 -16.35792 -16.13703 -15.31104 -15.08231 -14.62015 -14.36694 -14.10419 -13.81324 -12.87166 -12.68790 -12.47862 -12.29567 -12.13637 -11.65951 -11.48244 -11.41558 -11.12040 -10.92134 -10.70671 -10.51987 -10.40532 -10.29448 -9.69753 -9.50570 -9.37191 -8.34713 -8.15960 -7.42104 -5.96402 -3.98789 1.94978 2.07123 3.34381 3.38418 3.41412 3.57822 3.92296 4.35048 4.49419 4.56213 4.84794 4.95157 5.09941 5.25756 5.29761 5.35468 5.40987 5.50642 5.63265 5.65247 5.71504 5.89824 5.93150 6.10532 6.20310 6.31281 6.68440 6.75415 6.87600 6.95195 7.16103 7.39239 7.65397 7.83823 7.98844 8.07933 8.40484 9.04264 9.63016 11.13644 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.008414 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.671077 B = 3327.117520 C = 4604.878241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.502 4.502 8 H 0.053 0.947 9 C 0.056 3.944 10 C -0.062 4.062 11 C -0.092 4.092 12 C -0.158 4.158 13 C -0.112 4.112 14 C -0.215 4.215 15 C 0.120 3.880 16 O -0.277 6.277 17 C 0.052 3.948 18 H 0.082 0.918 19 C -0.150 4.150 20 C 0.048 3.952 21 O -0.374 6.374 22 C 0.026 3.974 23 H 0.261 0.739 24 H 0.026 0.974 25 H 0.034 0.966 26 H 0.124 0.876 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.620 -9.718 6.789 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.020 3.980 10 C -0.063 4.063 11 C -0.110 4.110 12 C -0.176 4.176 13 C -0.130 4.130 14 C -0.234 4.234 15 C 0.075 3.925 16 O -0.190 6.190 17 C -0.006 4.006 18 H 0.100 0.900 19 C -0.188 4.188 20 C -0.029 4.029 21 O -0.293 6.293 22 C -0.051 4.051 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.142 0.858 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.136 -9.547 6.935 13.790 hybrid contribution 0.949 0.859 -0.098 1.284 sum 8.086 -8.687 6.836 13.696 Atomic orbital electron populations 1.69948 1.05939 1.26692 1.50842 1.24967 0.94839 0.99001 0.95462 0.86649 0.79557 0.83153 0.78590 1.20287 1.21268 1.20310 1.20952 0.92734 0.89897 1.50427 0.92899 1.18200 0.92359 0.89112 0.98367 1.20148 0.99318 0.97583 0.89208 1.20953 0.97272 0.95284 0.97501 1.20949 1.00160 0.99094 0.97437 1.20643 1.00334 0.99845 0.92197 1.21101 1.03257 1.00219 0.98818 1.18912 0.95120 0.92460 0.86038 1.86383 1.59553 1.60755 1.12340 1.23705 0.96628 0.94273 0.85946 0.89988 1.23194 1.04914 0.98250 0.92398 1.23558 0.95530 0.87441 0.96335 1.88890 1.55613 1.53433 1.31317 1.23810 0.99510 0.96404 0.85413 0.92924 0.95540 0.94745 0.85766 0.86902 0.86981 0.86658 0.89269 0.88239 0.88434 0.92123 0.91872 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.50 -14.38 9.09 -34.44 -0.31 -14.69 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.06 1.50 4.83 -29.03 -0.14 1.36 16 10 C -0.06 -1.39 5.08 -104.47 -0.53 -1.92 16 11 C -0.09 -1.80 9.68 -39.61 -0.38 -2.18 16 12 C -0.16 -2.60 10.04 -39.56 -0.40 -3.00 16 13 C -0.11 -1.75 10.04 -39.60 -0.40 -2.14 16 14 C -0.22 -3.60 8.75 -39.43 -0.34 -3.95 16 15 C 0.12 2.43 6.59 -39.21 -0.26 2.18 16 16 O -0.28 -5.68 8.91 -19.43 -0.17 -5.85 16 17 C 0.05 0.80 2.90 -25.20 -0.07 0.73 16 18 H 0.08 1.12 6.57 -51.93 -0.34 0.78 16 19 C -0.15 -2.05 6.90 -24.72 -0.17 -2.22 16 20 C 0.05 0.56 7.72 38.21 0.29 0.85 16 21 O -0.37 -5.54 11.52 -35.23 -0.41 -5.94 16 22 C 0.03 0.36 6.65 37.73 0.25 0.61 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.03 0.73 8.05 -51.93 -0.42 0.31 16 25 H 0.03 0.99 7.69 -51.93 -0.40 0.59 16 26 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 27 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 28 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.12 1.61 5.69 -52.49 -0.30 1.31 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.10 1.57 8.09 -51.93 -0.42 1.15 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.73 8.06 -51.93 -0.42 0.32 16 35 H 0.10 1.46 7.97 -51.93 -0.41 1.05 16 LS Contribution 295.08 15.07 4.45 4.45 Total: -1.00 -31.83 295.08 -7.77 -39.60 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -4.79 Total: -0.15 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -2.56 Total: -22.79 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.19 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.58 Total: -11.80 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.83 -7.77 -39.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705392.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.785 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds