Wall clock time and date at job start Mon Mar 30 2020 06:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99932 * 2 1 4 4 H 1.48504 * 109.47163 * 239.99662 * 3 2 1 5 5 H 1.48506 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47367 * 120.00059 * 3 2 1 7 7 C 1.37873 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00289 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00211 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47210 * 179.97438 * 9 7 2 11 11 C 1.38161 * 120.02902 * 265.02153 * 10 9 7 12 12 C 1.38242 * 120.05469 * 179.97438 * 11 10 9 13 13 C 1.38286 * 120.11556 * 0.02562 * 12 11 10 14 14 C 1.38129 * 120.05295 * 359.67579 * 13 12 11 15 15 C 1.38718 * 120.02567 * 85.00121 * 10 9 7 16 16 O 1.35901 * 120.05778 * 0.02562 * 15 10 9 17 17 C 1.42894 * 117.00124 * 185.49157 * 16 15 10 18 18 H 1.09004 * 110.43742 * 38.27021 * 17 16 15 19 19 C 1.54813 * 110.48856 * 160.95707 * 17 16 15 20 20 C 1.54997 * 102.09204 * 139.55790 * 19 17 16 21 21 O 1.44385 * 103.48865 * 322.97733 * 20 19 17 22 22 C 1.43744 * 106.97722 * 40.05934 * 21 20 19 23 23 H 0.96996 * 119.99991 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46895 * 59.99385 * 9 7 2 25 25 H 1.08999 * 109.46431 * 299.99960 * 9 7 2 26 26 H 1.07997 * 119.97437 * 359.95194 * 11 10 9 27 27 H 1.08004 * 119.94176 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.97473 * 179.97438 * 13 12 11 29 29 H 1.08000 * 120.03052 * 180.32443 * 14 13 12 30 30 H 1.09000 * 110.90704 * 257.75387 * 19 17 16 31 31 H 1.08997 * 110.90398 * 21.32818 * 19 17 16 32 32 H 1.08999 * 110.61525 * 204.47776 * 20 19 17 33 33 H 1.09001 * 110.61806 * 81.47371 * 20 19 17 34 34 H 1.09004 * 109.87877 * 92.90733 * 22 21 20 35 35 H 1.08997 * 109.88009 * 213.90996 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.6008 -4.2375 -1.1911 12 6 3.4996 -5.2879 -1.1918 13 6 4.0297 -5.7483 -0.0004 14 6 3.6673 -5.1548 1.1931 15 6 2.7611 -4.1041 1.1970 16 8 2.3982 -3.5226 2.3705 17 6 3.0731 -3.9650 3.5497 18 1 4.1268 -4.1484 3.3391 19 6 2.9179 -2.9246 4.6855 20 6 2.6896 -3.8278 5.9243 21 8 1.8856 -4.9104 5.4082 22 6 2.4055 -5.2366 4.1083 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 2.1877 -3.8804 -2.1228 27 1 3.7876 -5.7504 -2.1243 28 1 4.7314 -6.5693 -0.0035 29 1 4.0856 -5.5112 2.1228 30 1 3.8263 -2.3328 4.7978 31 1 2.0560 -2.2813 4.5085 32 1 2.1502 -3.2853 6.7007 33 1 3.6392 -4.2031 6.3059 34 1 3.1424 -6.0352 4.1936 35 1 1.5934 -5.5503 3.4524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260705392.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:22 Heat of formation + Delta-G solvation = -83.545486 kcal Electronic energy + Delta-G solvation = -18050.720063 eV Core-core repulsion = 15205.980067 eV Total energy + Delta-G solvation = -2844.739997 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.47184 -39.90802 -37.90487 -35.46404 -33.20028 -32.45991 -30.72145 -29.88396 -28.73596 -25.25927 -24.29527 -23.51527 -22.07588 -21.65874 -19.07607 -18.50836 -17.64949 -17.45030 -16.75279 -16.54296 -16.08847 -15.77342 -15.44110 -15.18944 -14.40698 -14.16660 -14.09429 -13.77002 -13.32212 -13.25243 -13.11613 -12.86972 -12.64982 -12.49698 -12.32591 -12.07772 -11.82105 -11.71635 -11.57152 -11.19820 -10.71685 -10.59216 -9.62568 -8.91675 -8.17177 -6.30381 0.54078 0.65842 1.36010 1.39697 1.47845 2.31922 2.39247 2.89476 2.99904 3.12048 3.40516 3.77553 3.86045 4.05528 4.09251 4.11854 4.25416 4.33840 4.45753 4.59030 4.63573 4.71748 4.76031 4.83173 4.91964 5.03885 5.15150 5.23569 5.39715 5.54815 5.66491 5.73800 5.77987 5.90694 6.08625 6.20121 6.70528 6.80321 7.36392 8.91662 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.008414 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.671077 B = 3327.117520 C = 4604.878241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.517 4.517 8 H 0.049 0.951 9 C 0.071 3.929 10 C -0.111 4.111 11 C -0.104 4.104 12 C -0.153 4.153 13 C -0.095 4.095 14 C -0.208 4.208 15 C 0.104 3.896 16 O -0.318 6.318 17 C 0.041 3.959 18 H 0.106 0.894 19 C -0.154 4.154 20 C 0.052 3.948 21 O -0.398 6.398 22 C 0.031 3.969 23 H 0.264 0.736 24 H -0.002 1.002 25 H -0.006 1.006 26 H 0.119 0.881 27 H 0.150 0.850 28 H 0.161 0.839 29 H 0.150 0.850 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.921 -11.139 7.474 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.555 4.555 8 H 0.067 0.933 9 C 0.034 3.966 10 C -0.112 4.112 11 C -0.122 4.122 12 C -0.171 4.171 13 C -0.113 4.113 14 C -0.226 4.226 15 C 0.059 3.941 16 O -0.232 6.232 17 C -0.016 4.016 18 H 0.124 0.876 19 C -0.192 4.192 20 C -0.023 4.023 21 O -0.318 6.318 22 C -0.046 4.046 23 H 0.073 0.927 24 H 0.016 0.984 25 H 0.012 0.988 26 H 0.137 0.863 27 H 0.168 0.832 28 H 0.178 0.822 29 H 0.167 0.833 30 H 0.128 0.872 31 H 0.082 0.918 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.446 -10.980 7.622 16.964 hybrid contribution -0.071 1.215 -0.286 1.250 sum 10.374 -9.766 7.336 16.026 Atomic orbital electron populations 1.70093 1.07712 1.27799 1.51696 1.25933 0.95771 1.03074 0.94804 0.85520 0.78340 0.78163 0.79156 1.19071 1.20464 1.19358 1.21248 0.92647 0.91255 1.50306 0.93271 1.17818 0.92666 0.91215 0.94893 1.19912 1.01084 0.98292 0.91915 1.21036 0.98384 0.96520 0.96245 1.21317 0.98497 0.97523 0.99734 1.21235 0.99346 0.99731 0.90962 1.21453 1.01635 0.98506 1.01027 1.19063 0.96023 0.93687 0.85291 1.86336 1.61102 1.62002 1.13759 1.24101 0.97562 0.95333 0.84568 0.87581 1.23267 1.04394 0.98280 0.93230 1.23761 0.96939 0.86285 0.95347 1.88857 1.57035 1.54366 1.31517 1.23790 0.99397 0.96619 0.84812 0.92725 0.98375 0.98818 0.86317 0.83236 0.82193 0.83291 0.87187 0.91769 0.87150 0.88689 0.88334 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.81 13.29 21.45 0.28 -58.53 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 45.87 29.54 68.60 2.03 47.90 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.52 -31.12 9.09 25.60 0.23 -30.89 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 9 C 0.07 4.10 4.83 29.10 0.14 4.24 16 10 C -0.11 -5.24 5.08 -19.77 -0.10 -5.34 16 11 C -0.10 -4.10 9.68 22.25 0.22 -3.88 16 12 C -0.15 -4.57 10.04 22.28 0.22 -4.35 16 13 C -0.10 -2.53 10.04 22.26 0.22 -2.30 16 14 C -0.21 -6.35 8.75 22.37 0.20 -6.15 16 15 C 0.10 4.29 6.59 22.51 0.15 4.43 16 16 O -0.32 -13.53 8.91 -92.44 -0.82 -14.35 16 17 C 0.04 1.22 2.90 31.59 0.09 1.31 16 18 H 0.11 2.57 6.57 -2.38 -0.02 2.56 16 19 C -0.15 -4.14 6.90 31.90 0.22 -3.92 16 20 C 0.05 1.11 7.72 72.67 0.56 1.67 16 21 O -0.40 -11.33 11.52 -148.98 -1.72 -13.05 16 22 C 0.03 0.82 6.65 72.35 0.48 1.31 16 23 H 0.26 15.60 8.31 -92.71 -0.77 14.82 16 24 H 0.00 -0.12 8.05 -2.39 -0.02 -0.14 16 25 H -0.01 -0.41 7.69 -2.39 -0.02 -0.43 16 26 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 27 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 28 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 29 H 0.15 3.46 5.69 -2.91 -0.02 3.44 16 30 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.06 2.16 8.09 -2.39 -0.02 2.14 16 32 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.10 1.92 8.06 -2.39 -0.02 1.90 16 35 H 0.07 2.24 7.97 -2.39 -0.02 2.22 16 Total: -1.00 -74.51 295.08 3.94 -70.57 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 1.07 Total: 10.78 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 3.10 Total: -43.32 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.28 Total: -58.53 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -2.54 Total: -27.40 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -74.51 3.94 -70.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705392.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.976 kcal (2) G-P(sol) polarization free energy of solvation -74.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds