Wall clock time and date at job start Mon Mar 30 2020 06:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40019 * 125.95097 * 2 1 4 4 C 1.30126 * 109.77299 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.67224 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46880 * 89.97820 * 5 4 3 7 7 C 1.50702 * 109.46876 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00245 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99906 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99911 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00062 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47295 * 90.00052 * 11 9 7 13 13 H 1.48500 * 109.47203 * 210.00172 * 11 9 7 14 14 H 1.48507 * 109.47304 * 330.00153 * 11 9 7 15 15 C 1.41599 * 108.66459 * 0.02562 * 4 3 2 16 16 C 1.37136 * 125.94936 * 179.97438 * 2 1 3 17 17 C 1.39251 * 133.79490 * 0.06794 * 16 2 1 18 18 C 1.37626 * 119.78084 * 179.97438 * 17 16 2 19 19 C 1.38905 * 120.62308 * 359.96877 * 18 17 16 20 20 C 1.36664 * 120.65570 * 0.02570 * 19 18 17 21 21 F 1.35099 * 120.09945 * 179.97438 * 20 19 18 22 22 H 1.08995 * 109.47287 * 270.04656 * 1 2 3 23 23 H 1.09003 * 109.46616 * 30.04373 * 1 2 3 24 24 H 1.09000 * 109.46846 * 150.04020 * 1 2 3 25 25 H 1.08993 * 109.47663 * 209.98040 * 5 4 3 26 26 H 1.08998 * 109.47037 * 329.98418 * 5 4 3 27 27 H 1.09000 * 109.47080 * 300.00125 * 6 5 4 28 28 H 1.08998 * 109.46798 * 60.00451 * 6 5 4 29 29 H 0.96993 * 119.99847 * 179.97438 * 10 9 7 30 30 H 1.08003 * 120.10550 * 359.97438 * 17 16 2 31 31 H 1.08004 * 119.69350 * 179.97438 * 18 17 16 32 32 H 1.07995 * 119.67416 * 179.74645 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2870 1.1335 0.0000 4 6 3.5367 0.7709 0.0005 5 6 4.7218 1.7018 0.0013 6 6 5.1218 2.0170 1.4441 7 6 6.3065 2.9484 1.4448 8 1 6.7314 3.2825 0.5098 9 6 6.8481 3.3741 2.6393 10 7 6.3310 2.9669 3.7779 11 14 8.3170 4.5280 2.6402 12 1 7.8414 5.9348 2.6402 13 1 9.1381 4.2831 3.8531 14 1 9.1393 4.2836 1.4280 15 6 3.5982 -0.6437 0.0003 16 6 2.2700 -1.1102 0.0005 17 6 2.0221 -2.4804 -0.0001 18 6 3.0758 -3.3657 0.0002 19 6 4.3865 -2.9057 0.0004 20 6 4.6546 -1.5656 0.0008 21 9 5.9337 -1.1306 0.0015 22 1 -0.3633 0.0008 1.0276 23 1 -0.3633 0.8896 -0.5145 24 1 -0.3633 -0.8904 -0.5132 25 1 5.5577 1.2264 -0.5119 26 1 4.4581 2.6261 -0.5128 27 1 4.2859 2.4925 1.9572 28 1 5.3855 1.0927 1.9581 29 1 6.7122 3.2660 4.6181 30 1 1.0062 -2.8472 -0.0007 31 1 2.8819 -4.4282 0.0001 32 1 5.2017 -3.6140 0.0047 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260732902.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:50 Heat of formation + Delta-G solvation = 32.231780 kcal Electronic energy + Delta-G solvation = -17429.782078 eV Core-core repulsion = 14498.895006 eV Total energy + Delta-G solvation = -2930.887072 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.55887 -41.20713 -36.94750 -34.62788 -32.91125 -30.67210 -29.96166 -29.62755 -26.72587 -24.70123 -22.91427 -22.04229 -21.26991 -19.30301 -17.17513 -17.07434 -16.23494 -15.94182 -15.64490 -15.19936 -14.88682 -14.44850 -14.39688 -13.27671 -13.09414 -12.90083 -12.79430 -12.55319 -12.15471 -11.60393 -11.56198 -11.49336 -10.96120 -10.91667 -10.61860 -10.46343 -9.88164 -9.76348 -9.24289 -9.07692 -8.52355 -8.29936 -7.62703 -5.94890 -3.97631 0.94419 1.50377 2.54621 2.80144 3.36763 3.42433 3.46393 3.75215 4.35532 4.50845 4.61832 4.67208 4.97308 5.01789 5.16547 5.25616 5.33425 5.41121 5.42211 5.65373 5.79804 6.04640 6.18669 6.36016 6.49201 6.55601 6.66719 6.90062 7.07198 7.16719 7.71517 7.78687 7.99382 8.03978 8.43166 9.08340 9.65760 11.16620 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.027612 B = 0.006110 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.824277 B = 4581.504529 C = 5226.678405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.412 5.412 3 N -0.262 5.262 4 C 0.138 3.862 5 C -0.045 4.045 6 C 0.034 3.966 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.057 3.943 10 N -0.895 5.895 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.210 4.210 16 C 0.151 3.849 17 C -0.163 4.163 18 C -0.045 4.045 19 C -0.212 4.212 20 C 0.195 3.805 21 F -0.122 7.122 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.260 0.740 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.075 -12.585 -8.390 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.198 5.198 3 N -0.075 5.075 4 C -0.037 4.037 5 C -0.085 4.085 6 C -0.004 4.004 7 C -0.557 4.557 8 H 0.076 0.924 9 C -0.144 4.144 10 N -0.534 5.534 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.219 4.219 16 C 0.033 3.967 17 C -0.185 4.185 18 C -0.066 4.066 19 C -0.232 4.232 20 C 0.173 3.827 21 F -0.100 7.100 22 H 0.087 0.913 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.153 0.847 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.063 -11.515 -8.208 17.954 hybrid contribution 1.334 -0.009 0.252 1.357 sum -9.730 -11.524 -7.955 17.052 Atomic orbital electron populations 1.21675 0.74188 1.03872 1.02913 1.48357 1.05739 1.01510 1.64172 1.76830 1.01634 1.07370 1.21681 1.23019 0.93923 0.91995 0.94739 1.20528 0.89628 0.95294 1.03008 1.19028 0.96495 0.96928 0.87952 1.21179 1.14032 1.27989 0.92492 0.92354 1.25012 0.97261 0.96510 0.95594 1.69980 1.41345 1.44800 0.97267 0.86565 0.82651 0.81089 0.77533 1.20679 1.21258 1.19758 1.18889 0.92758 0.94163 1.16111 1.18682 0.89713 0.89812 0.98449 1.19986 0.99854 0.88715 1.09957 1.20672 0.90903 0.99300 0.95699 1.20566 0.98392 0.93389 1.10873 1.16935 0.77778 0.91456 0.96580 1.91568 1.35184 1.90436 1.92777 0.91311 0.89454 0.90087 0.90444 0.90904 0.96261 0.96284 0.93011 0.85563 0.84690 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.22 11.45 59.84 0.69 1.90 16 2 N -0.41 -6.77 4.07 -65.47 -0.27 -7.04 16 3 N -0.26 -5.31 12.44 33.91 0.42 -4.88 16 4 C 0.14 2.92 6.49 -82.03 -0.53 2.38 16 5 C -0.05 -1.02 5.51 -27.88 -0.15 -1.17 16 6 C 0.03 0.93 4.96 -27.88 -0.14 0.80 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -27.65 13.29 55.43 0.74 -26.91 16 11 Si 0.89 22.07 29.54 -169.99 -5.02 17.04 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 C -0.21 -4.00 6.11 -106.92 -0.65 -4.65 16 16 C 0.15 2.46 6.88 -84.16 -0.58 1.88 16 17 C -0.16 -2.00 10.03 -39.43 -0.40 -2.40 16 18 C -0.04 -0.50 10.01 -39.56 -0.40 -0.90 16 19 C -0.21 -2.85 9.94 -39.90 -0.40 -3.25 16 20 C 0.19 3.40 7.31 -39.41 -0.29 3.11 16 21 F -0.12 -2.33 16.17 2.25 0.04 -2.29 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.08 1.68 7.25 -51.93 -0.38 1.30 16 26 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 32 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 286.40 15.07 4.32 4.32 Total: -1.00 -33.88 286.40 -6.76 -40.64 By element: Atomic # 1 Polarization: -1.09 SS G_CDS: -3.72 Total: -4.81 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -3.26 Total: -16.06 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.89 Total: -38.83 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.88 -6.76 -40.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260732902.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.868 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds