Wall clock time and date at job start Mon Mar 30 2020 06:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40019 * 125.95097 * 2 1 4 4 C 1.30126 * 109.77299 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.67224 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46880 * 89.97820 * 5 4 3 7 7 C 1.50702 * 109.46876 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00245 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99906 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99911 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00062 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47295 * 90.00052 * 11 9 7 13 13 H 1.48500 * 109.47203 * 210.00172 * 11 9 7 14 14 H 1.48507 * 109.47304 * 330.00153 * 11 9 7 15 15 C 1.41599 * 108.66459 * 0.02562 * 4 3 2 16 16 C 1.37136 * 125.94936 * 179.97438 * 2 1 3 17 17 C 1.39251 * 133.79490 * 0.06794 * 16 2 1 18 18 C 1.37626 * 119.78084 * 179.97438 * 17 16 2 19 19 C 1.38905 * 120.62308 * 359.96877 * 18 17 16 20 20 C 1.36664 * 120.65570 * 0.02570 * 19 18 17 21 21 F 1.35099 * 120.09945 * 179.97438 * 20 19 18 22 22 H 1.08995 * 109.47287 * 270.04656 * 1 2 3 23 23 H 1.09003 * 109.46616 * 30.04373 * 1 2 3 24 24 H 1.09000 * 109.46846 * 150.04020 * 1 2 3 25 25 H 1.08993 * 109.47663 * 209.98040 * 5 4 3 26 26 H 1.08998 * 109.47037 * 329.98418 * 5 4 3 27 27 H 1.09000 * 109.47080 * 300.00125 * 6 5 4 28 28 H 1.08998 * 109.46798 * 60.00451 * 6 5 4 29 29 H 0.96993 * 119.99847 * 179.97438 * 10 9 7 30 30 H 1.08003 * 120.10550 * 359.97438 * 17 16 2 31 31 H 1.08004 * 119.69350 * 179.97438 * 18 17 16 32 32 H 1.07995 * 119.67416 * 179.74645 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2870 1.1335 0.0000 4 6 3.5367 0.7709 0.0005 5 6 4.7218 1.7018 0.0013 6 6 5.1218 2.0170 1.4441 7 6 6.3065 2.9484 1.4448 8 1 6.7314 3.2825 0.5098 9 6 6.8481 3.3741 2.6393 10 7 6.3310 2.9669 3.7779 11 14 8.3170 4.5280 2.6402 12 1 7.8414 5.9348 2.6402 13 1 9.1381 4.2831 3.8531 14 1 9.1393 4.2836 1.4280 15 6 3.5982 -0.6437 0.0003 16 6 2.2700 -1.1102 0.0005 17 6 2.0221 -2.4804 -0.0001 18 6 3.0758 -3.3657 0.0002 19 6 4.3865 -2.9057 0.0004 20 6 4.6546 -1.5656 0.0008 21 9 5.9337 -1.1306 0.0015 22 1 -0.3633 0.0008 1.0276 23 1 -0.3633 0.8896 -0.5145 24 1 -0.3633 -0.8904 -0.5132 25 1 5.5577 1.2264 -0.5119 26 1 4.4581 2.6261 -0.5128 27 1 4.2859 2.4925 1.9572 28 1 5.3855 1.0927 1.9581 29 1 6.7122 3.2660 4.6181 30 1 1.0062 -2.8472 -0.0007 31 1 2.8819 -4.4282 0.0001 32 1 5.2017 -3.6140 0.0047 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260732902.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:50 Heat of formation + Delta-G solvation = 10.682898 kcal Electronic energy + Delta-G solvation = -17430.716508 eV Core-core repulsion = 14498.895006 eV Total energy + Delta-G solvation = -2931.821501 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.88711 -42.47129 -38.08395 -36.34816 -34.75257 -32.51248 -31.06694 -30.80249 -28.35187 -26.32620 -24.16055 -23.53150 -22.87811 -20.74984 -18.70077 -18.33156 -18.12576 -17.14018 -16.96719 -16.50537 -16.34137 -16.11342 -15.56467 -14.89321 -14.79200 -14.31476 -14.09579 -13.84048 -13.53749 -13.20433 -12.91869 -12.73658 -12.65081 -12.47966 -12.37309 -12.12992 -11.73846 -11.58492 -11.30148 -10.72167 -10.58890 -9.74033 -8.80893 -8.21678 -6.34643 -0.23589 0.38930 1.36697 1.40823 1.42761 1.43764 1.54393 2.40871 2.62404 3.11224 3.15678 3.51514 3.58265 3.77244 3.96825 4.23655 4.33026 4.40357 4.42947 4.57937 4.65724 4.67763 4.81393 4.90606 5.06787 5.21519 5.31243 5.35946 5.41918 5.57510 5.76169 5.83501 6.08928 6.16330 6.56706 6.80076 7.34619 8.90923 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.027612 B = 0.006110 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.824277 B = 4581.504529 C = 5226.678405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.409 5.409 3 N -0.290 5.290 4 C 0.104 3.896 5 C -0.029 4.029 6 C 0.049 3.951 7 C -0.543 4.543 8 H 0.067 0.933 9 C -0.001 4.001 10 N -0.936 5.936 11 Si 0.973 3.027 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.260 1.260 15 C -0.247 4.247 16 C 0.139 3.861 17 C -0.147 4.147 18 C -0.031 4.031 19 C -0.193 4.193 20 C 0.145 3.855 21 F -0.146 7.146 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.122 0.878 25 H 0.078 0.922 26 H 0.073 0.927 27 H -0.016 1.016 28 H -0.014 1.014 29 H 0.265 0.735 30 H 0.173 0.827 31 H 0.190 0.810 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 -14.815 -9.176 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.196 5.196 3 N -0.105 5.105 4 C -0.071 4.071 5 C -0.069 4.069 6 C 0.011 3.989 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.199 4.199 10 N -0.576 5.576 11 Si 0.796 3.204 12 H -0.195 1.195 13 H -0.206 1.206 14 H -0.184 1.184 15 C -0.255 4.255 16 C 0.021 3.979 17 C -0.169 4.169 18 C -0.051 4.051 19 C -0.213 4.213 20 C 0.123 3.877 21 F -0.125 7.125 22 H 0.098 0.902 23 H 0.110 0.890 24 H 0.140 0.860 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.003 0.997 28 H 0.005 0.995 29 H 0.073 0.927 30 H 0.190 0.810 31 H 0.207 0.793 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.121 -13.749 -9.011 20.424 hybrid contribution 1.494 0.527 0.506 1.663 sum -10.627 -13.222 -8.505 18.976 Atomic orbital electron populations 1.22168 0.70991 1.06206 1.04349 1.48719 1.07239 1.00508 1.63129 1.76620 1.01938 1.10121 1.21788 1.22666 0.93676 0.93185 0.97529 1.20119 0.91093 0.96055 0.99598 1.18754 0.94965 0.94771 0.90445 1.21614 1.14726 1.28514 0.93220 0.91461 1.26064 1.00637 0.98249 0.94940 1.70132 1.43135 1.46189 0.98104 0.85333 0.78346 0.78592 0.78089 1.19546 1.20560 1.18380 1.19166 0.95028 0.93408 1.17932 1.19169 0.88371 0.91391 0.98956 1.20604 1.02578 0.86525 1.07176 1.21331 0.89154 1.01777 0.92874 1.21061 1.00733 0.91808 1.07706 1.17442 0.76804 0.93106 1.00300 1.91491 1.36581 1.90932 1.93462 0.90237 0.88990 0.85972 0.90350 0.90875 0.99746 0.99535 0.92678 0.80982 0.79284 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.91 11.45 127.77 1.46 3.37 16 2 N -0.41 -13.13 4.07 -361.05 -1.47 -14.60 16 3 N -0.29 -12.23 12.44 -46.63 -0.58 -12.81 16 4 C 0.10 4.64 6.49 43.64 0.28 4.93 16 5 C -0.03 -1.43 5.51 29.85 0.16 -1.26 16 6 C 0.05 2.87 4.96 29.85 0.15 3.02 16 7 C -0.54 -32.88 9.11 25.60 0.23 -32.65 16 8 H 0.07 3.85 7.74 -2.91 -0.02 3.82 16 9 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 10 N -0.94 -59.94 13.29 21.45 0.28 -59.65 16 11 Si 0.97 46.01 29.54 68.60 2.03 48.03 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 15 C -0.25 -9.68 6.11 -21.35 -0.13 -9.81 16 16 C 0.14 4.32 6.88 39.18 0.27 4.59 16 17 C -0.15 -2.95 10.03 22.37 0.22 -2.72 16 18 C -0.03 -0.54 10.01 22.28 0.22 -0.31 16 19 C -0.19 -4.74 9.94 22.06 0.22 -4.52 16 20 C 0.15 5.20 7.31 22.38 0.16 5.36 16 21 F -0.15 -5.98 16.17 44.97 0.73 -5.25 16 22 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.08 3.68 7.25 -2.39 -0.02 3.67 16 26 H 0.07 3.42 8.14 -2.39 -0.02 3.40 16 27 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 28 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 29 H 0.26 15.78 8.31 -92.71 -0.77 15.00 16 30 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -80.06 286.40 5.84 -74.23 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: 1.12 Total: -0.33 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 3.72 Total: -29.61 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -1.77 Total: -87.06 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.73 Total: -5.25 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -80.06 5.84 -74.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260732902.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.909 kcal (2) G-P(sol) polarization free energy of solvation -80.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds