Wall clock time and date at job start Mon Mar 30 2020 06:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 13 13 N 1.30141 * 125.66886 * 60.02675 * 12 2 1 14 14 N 1.40018 * 109.76123 * 179.97438 * 13 12 2 15 15 C 1.46507 * 125.94585 * 180.02562 * 14 13 12 16 16 C 1.37130 * 108.11088 * 0.02562 * 14 13 12 17 17 C 1.39259 * 133.82612 * 179.97438 * 16 14 13 18 18 C 1.36617 * 119.89019 * 180.02562 * 17 16 14 19 19 C 1.38912 * 120.77131 * 0.02562 * 18 17 16 20 20 C 1.36658 * 120.65212 * 359.97438 * 19 18 17 21 21 F 1.35093 * 120.17825 * 179.97438 * 20 19 18 22 22 C 1.40288 * 119.65061 * 359.67327 * 20 19 18 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46733 * 90.02644 * 15 14 13 28 28 H 1.08995 * 109.47241 * 210.02794 * 15 14 13 29 29 H 1.08999 * 109.46770 * 330.03020 * 15 14 13 30 30 H 1.08000 * 120.05660 * 359.97438 * 17 16 14 31 31 H 1.08001 * 119.61267 * 180.02562 * 18 17 16 32 32 H 1.08000 * 119.67426 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 6 2.0324 -0.7104 1.2304 13 7 1.7874 -1.9493 1.5446 14 7 2.4175 -2.2644 2.7546 15 6 2.3759 -3.5620 3.4336 16 6 3.0803 -1.1471 3.1937 17 6 3.8629 -0.8668 4.3109 18 6 4.3998 0.3792 4.4709 19 6 4.1745 1.3763 3.5302 20 6 3.4108 1.1306 2.4239 21 9 3.1975 2.1075 1.5154 22 6 2.8546 -0.1431 2.2334 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1620 -3.4843 27 1 3.2051 -4.1794 3.0882 28 1 2.4585 -3.4116 4.5100 29 1 1.4331 -4.0602 3.2076 30 1 4.0445 -1.6330 5.0501 31 1 5.0064 0.5916 5.3389 32 1 4.6072 2.3552 3.6746 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260780154.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:39 Heat of formation + Delta-G solvation = 38.881139 kcal Electronic energy + Delta-G solvation = -17848.815692 eV Core-core repulsion = 14918.216958 eV Total energy + Delta-G solvation = -2930.598734 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.40545 -40.94867 -36.81552 -34.76170 -32.64928 -30.18035 -29.78026 -29.32934 -25.96861 -25.07503 -22.91672 -21.94634 -21.43609 -18.95775 -17.00870 -16.82551 -16.06278 -15.70136 -15.40759 -15.07460 -14.69136 -14.57890 -14.12525 -13.11123 -12.84338 -12.76139 -12.52867 -12.40363 -11.76271 -11.42320 -11.35301 -11.20015 -10.86985 -10.72428 -10.53018 -10.20568 -9.97876 -9.62133 -9.35254 -8.83434 -8.33482 -8.27841 -7.41385 -5.97311 -4.02980 1.17452 1.68394 2.82553 3.17077 3.36267 3.39537 3.44088 3.97702 4.47660 4.56850 4.80872 4.86637 5.14568 5.22474 5.33081 5.35077 5.47489 5.54744 5.63087 5.93862 6.05294 6.25542 6.42808 6.54355 6.87346 6.92401 7.08897 7.17497 7.30847 7.41542 7.67906 7.89821 8.09452 8.30298 8.45975 8.96672 9.60042 11.08963 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024070 B = 0.007819 C = 0.006715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.000674 B = 3580.267490 C = 4168.897368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.104 3.896 3 H 0.057 0.943 4 C -0.503 4.503 5 H 0.056 0.944 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.160 3.840 13 N -0.257 5.257 14 N -0.418 5.418 15 C 0.117 3.883 16 C 0.146 3.854 17 C -0.162 4.162 18 C -0.049 4.049 19 C -0.218 4.218 20 C 0.195 3.805 21 F -0.123 7.123 22 C -0.213 4.213 23 H 0.033 0.967 24 H 0.008 0.992 25 H 0.090 0.910 26 H 0.262 0.738 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 -2.578 14.071 15.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.084 3.916 3 H 0.075 0.925 4 C -0.542 4.542 5 H 0.075 0.925 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.015 4.015 13 N -0.069 5.069 14 N -0.203 5.203 15 C -0.025 4.025 16 C 0.028 3.972 17 C -0.185 4.185 18 C -0.070 4.070 19 C -0.238 4.238 20 C 0.172 3.828 21 F -0.101 7.101 22 C -0.222 4.222 23 H 0.053 0.947 24 H 0.027 0.973 25 H 0.109 0.891 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.141 0.859 31 H 0.150 0.850 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.215 -3.744 13.621 14.742 hybrid contribution 0.770 0.244 -0.656 1.041 sum 4.984 -3.500 12.965 14.324 Atomic orbital electron populations 1.21753 0.96820 0.99833 1.00416 1.17679 0.93288 0.95190 0.85438 0.92529 1.20928 1.31465 1.12248 0.89535 0.92548 1.24903 0.95044 0.95000 0.98842 1.69867 1.36565 1.22739 1.23635 0.86584 0.79184 0.79763 0.82074 1.20249 1.21176 1.20294 1.23499 0.92225 0.90046 0.95777 1.76954 1.17733 1.16179 0.96061 1.48540 1.43441 1.09139 1.19148 1.21600 1.03615 0.81432 0.95839 1.18723 0.95609 0.87711 0.95199 1.19718 1.02983 0.98361 0.97394 1.20359 0.97287 0.91542 0.97855 1.20499 1.05700 1.01643 0.96003 1.16966 0.95091 0.83639 0.87059 1.91539 1.92669 1.60459 1.65480 1.19077 1.08972 0.94589 0.99565 0.94749 0.97331 0.89102 0.92782 0.91669 0.90414 0.89606 0.85901 0.85045 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.95 37.16 0.33 -2.98 16 2 C 0.10 2.78 2.72 -92.92 -0.25 2.53 16 3 H 0.06 1.59 6.47 -51.93 -0.34 1.25 16 4 C -0.50 -14.41 8.55 -34.44 -0.29 -14.71 16 5 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 6 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.65 11.32 55.43 0.63 -25.02 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.16 3.86 5.68 -82.05 -0.47 3.39 16 13 N -0.26 -5.92 12.44 33.90 0.42 -5.50 16 14 N -0.42 -7.72 4.07 -65.47 -0.27 -7.98 16 15 C 0.12 1.44 11.45 59.85 0.69 2.13 16 16 C 0.15 2.64 6.89 -84.17 -0.58 2.07 16 17 C -0.16 -2.23 9.98 -39.79 -0.40 -2.63 16 18 C -0.05 -0.62 9.96 -39.92 -0.40 -1.02 16 19 C -0.22 -3.21 9.94 -39.90 -0.40 -3.61 16 20 C 0.19 3.73 7.31 -39.38 -0.29 3.44 16 21 F -0.12 -2.56 15.68 2.25 0.04 -2.53 16 22 C -0.21 -4.52 6.11 -106.91 -0.65 -5.17 16 23 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 280.68 15.07 4.23 4.23 Total: -1.00 -31.95 280.68 -6.35 -38.30 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -3.57 Total: -3.51 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.80 Total: -14.87 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.78 Total: -38.50 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.95 -6.35 -38.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260780154.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.181 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds