Wall clock time and date at job start Mon Mar 30 2020 06:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 13 13 N 1.30141 * 125.66886 * 60.02675 * 12 2 1 14 14 N 1.40018 * 109.76123 * 179.97438 * 13 12 2 15 15 C 1.46507 * 125.94585 * 180.02562 * 14 13 12 16 16 C 1.37130 * 108.11088 * 0.02562 * 14 13 12 17 17 C 1.39259 * 133.82612 * 179.97438 * 16 14 13 18 18 C 1.36617 * 119.89019 * 180.02562 * 17 16 14 19 19 C 1.38912 * 120.77131 * 0.02562 * 18 17 16 20 20 C 1.36658 * 120.65212 * 359.97438 * 19 18 17 21 21 F 1.35093 * 120.17825 * 179.97438 * 20 19 18 22 22 C 1.40288 * 119.65061 * 359.67327 * 20 19 18 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46733 * 90.02644 * 15 14 13 28 28 H 1.08995 * 109.47241 * 210.02794 * 15 14 13 29 29 H 1.08999 * 109.46770 * 330.03020 * 15 14 13 30 30 H 1.08000 * 120.05660 * 359.97438 * 17 16 14 31 31 H 1.08001 * 119.61267 * 180.02562 * 18 17 16 32 32 H 1.08000 * 119.67426 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 6 2.0324 -0.7104 1.2304 13 7 1.7874 -1.9493 1.5446 14 7 2.4175 -2.2644 2.7546 15 6 2.3759 -3.5620 3.4336 16 6 3.0803 -1.1471 3.1937 17 6 3.8629 -0.8668 4.3109 18 6 4.3998 0.3792 4.4709 19 6 4.1745 1.3763 3.5302 20 6 3.4108 1.1306 2.4239 21 9 3.1975 2.1075 1.5154 22 6 2.8546 -0.1431 2.2334 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1620 -3.4843 27 1 3.2051 -4.1794 3.0882 28 1 2.4585 -3.4116 4.5100 29 1 1.4331 -4.0602 3.2076 30 1 4.0445 -1.6330 5.0501 31 1 5.0064 0.5916 5.3389 32 1 4.6072 2.3552 3.6746 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260780154.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:39 Heat of formation + Delta-G solvation = 18.906042 kcal Electronic energy + Delta-G solvation = -17849.681877 eV Core-core repulsion = 14918.216958 eV Total energy + Delta-G solvation = -2931.464919 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.85351 -42.35342 -38.09529 -36.59816 -34.35345 -32.05624 -30.98228 -30.69145 -27.40214 -27.15090 -24.38412 -23.43927 -22.87877 -20.56647 -18.63730 -18.22304 -17.87205 -17.03265 -16.84638 -16.66776 -16.25687 -16.04136 -15.34120 -14.89614 -14.62600 -14.15778 -13.87692 -13.54564 -13.48001 -12.98251 -12.88860 -12.78055 -12.58056 -12.40775 -12.23852 -12.22064 -11.83921 -11.48045 -11.09978 -10.60573 -10.51054 -9.64553 -8.73135 -8.13659 -6.27996 -0.12017 0.45588 1.37589 1.40571 1.47861 1.58111 1.62640 2.41143 2.70937 3.12786 3.26796 3.64053 3.71213 3.96220 4.02304 4.33303 4.44967 4.46508 4.55012 4.66688 4.78836 4.88152 4.92602 5.07651 5.14790 5.27062 5.40706 5.45433 5.51202 5.74890 5.92597 5.95542 6.20720 6.22618 6.74249 6.81652 7.38055 8.91525 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024070 B = 0.007819 C = 0.006715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.000674 B = 3580.267490 C = 4168.897368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.105 3.895 3 H 0.029 0.971 4 C -0.523 4.523 5 H 0.041 0.959 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.959 3.041 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.125 3.875 13 N -0.290 5.290 14 N -0.415 5.415 15 C 0.104 3.896 16 C 0.137 3.863 17 C -0.146 4.146 18 C -0.033 4.033 19 C -0.194 4.194 20 C 0.144 3.856 21 F -0.149 7.149 22 C -0.254 4.254 23 H 0.027 0.973 24 H 0.020 0.980 25 H 0.070 0.930 26 H 0.266 0.734 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.171 0.829 31 H 0.190 0.810 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 -3.599 16.929 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.085 3.915 3 H 0.047 0.953 4 C -0.562 4.562 5 H 0.059 0.941 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.784 3.216 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.199 1.199 12 C -0.050 4.050 13 N -0.103 5.103 14 N -0.202 5.202 15 C -0.035 4.035 16 C 0.018 3.982 17 C -0.168 4.168 18 C -0.054 4.054 19 C -0.215 4.215 20 C 0.122 3.878 21 F -0.127 7.127 22 C -0.263 4.263 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.138 0.862 29 H 0.105 0.895 30 H 0.188 0.812 31 H 0.207 0.793 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.184 -4.769 16.491 18.247 hybrid contribution 0.230 0.534 -1.352 1.471 sum 6.414 -4.235 15.140 16.979 Atomic orbital electron populations 1.21555 0.96782 0.99104 0.99918 1.17381 0.93377 0.93974 0.86780 0.95347 1.21106 1.31816 1.12115 0.91116 0.94108 1.25691 0.95110 0.95704 1.01637 1.69981 1.37082 1.23665 1.24445 0.85600 0.78685 0.78717 0.78595 1.19831 1.19871 1.19881 1.23005 0.94679 0.91102 0.96189 1.76708 1.18981 1.15886 0.98760 1.48850 1.42567 1.10976 1.17759 1.22094 1.04400 0.79232 0.97779 1.19211 0.96383 0.86565 0.95992 1.20340 1.00347 1.00031 0.96077 1.21047 0.96063 0.89987 0.98289 1.21014 1.02748 1.03652 0.94055 1.17498 0.98220 0.83141 0.88908 1.91463 1.93277 1.61196 1.66793 1.19349 1.10135 0.96638 1.00206 0.95362 0.96063 0.91103 0.92487 0.90199 0.86207 0.89480 0.81164 0.79331 0.82040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.26 8.95 71.98 0.64 -5.61 16 2 C 0.11 5.99 2.72 -12.29 -0.03 5.95 16 3 H 0.03 1.74 6.47 -2.39 -0.02 1.72 16 4 C -0.52 -31.60 8.55 25.60 0.22 -31.38 16 5 H 0.04 2.52 7.74 -2.91 -0.02 2.49 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -54.70 11.32 21.45 0.24 -54.45 16 8 Si 0.96 46.02 29.54 68.60 2.03 48.04 16 9 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 12 C 0.12 6.33 5.68 43.63 0.25 6.57 16 13 N -0.29 -13.76 12.44 -46.65 -0.58 -14.34 16 14 N -0.42 -14.89 4.07 -361.04 -1.47 -16.36 16 15 C 0.10 2.28 11.45 127.77 1.46 3.74 16 16 C 0.14 4.71 6.89 39.17 0.27 4.98 16 17 C -0.15 -3.27 9.98 22.14 0.22 -3.05 16 18 C -0.03 -0.64 9.96 22.05 0.22 -0.42 16 19 C -0.19 -5.16 9.94 22.06 0.22 -4.94 16 20 C 0.14 5.61 7.31 22.40 0.16 5.77 16 21 F -0.15 -6.60 15.68 44.97 0.70 -5.90 16 22 C -0.25 -11.05 6.11 -21.35 -0.13 -11.18 16 23 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 4.08 6.07 -2.39 -0.01 4.07 16 26 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 27 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -76.21 280.68 6.01 -70.21 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: 1.13 Total: 0.88 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: 3.95 Total: -28.08 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -1.81 Total: -85.15 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.70 Total: -5.90 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -76.21 6.01 -70.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260780154.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.113 kcal (2) G-P(sol) polarization free energy of solvation -76.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds