Wall clock time and date at job start Mon Mar 30 2020 06:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46734 * 2 1 4 4 C 1.50702 * 109.47068 * 240.00275 * 2 1 3 5 5 H 1.07999 * 119.99175 * 239.99756 * 4 2 1 6 6 C 1.37872 * 120.00063 * 59.99630 * 4 2 1 7 7 N 1.31515 * 119.99980 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99868 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47312 * 90.00215 * 8 6 4 10 10 H 1.48502 * 109.47098 * 210.00241 * 8 6 4 11 11 H 1.48506 * 109.47356 * 330.00311 * 8 6 4 12 12 C 1.50703 * 109.46938 * 119.99798 * 2 1 3 13 13 N 1.30083 * 124.94891 * 59.98455 * 12 2 1 14 14 C 1.35841 * 109.64025 * 179.97438 * 13 12 2 15 15 C 1.39738 * 133.56095 * 180.34376 * 14 13 12 16 16 C 1.36584 * 119.92039 * 180.17594 * 15 14 13 17 17 C 1.38981 * 120.64157 * 359.45273 * 16 15 14 18 18 F 1.35104 * 119.80158 * 180.27611 * 17 16 15 19 19 C 1.38042 * 120.39730 * 0.25768 * 17 16 15 20 20 C 1.38841 * 119.67118 * 0.02562 * 19 17 16 21 21 N 1.36089 * 124.95297 * 239.94956 * 12 2 1 22 22 C 1.46504 * 126.35031 * 0.04530 * 21 12 2 23 23 H 1.08998 * 109.47404 * 60.00042 * 1 2 3 24 24 H 1.09000 * 109.47192 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47228 * 299.99542 * 1 2 3 26 26 H 0.97001 * 119.99349 * 179.97438 * 7 6 4 27 27 H 1.08003 * 120.03911 * 359.91246 * 15 14 13 28 28 H 1.08002 * 119.68252 * 179.73460 * 16 15 14 29 29 H 1.07997 * 120.16730 * 180.02562 * 19 17 16 30 30 H 1.08999 * 109.47250 * 270.00018 * 22 21 12 31 31 H 1.09005 * 109.47067 * 30.00324 * 22 21 12 32 32 H 1.09002 * 109.47085 * 149.99642 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3225 -1.1194 -4.0079 9 1 1.3449 -2.1615 -4.4124 10 1 2.4872 -0.1401 -5.1120 11 1 3.6309 -1.7565 -3.7120 12 6 2.0323 -0.7104 1.2305 13 7 1.7778 -1.9501 1.5313 14 6 2.3841 -2.2690 2.7043 15 6 2.4472 -3.4367 3.4694 16 6 3.1533 -3.4478 4.6385 17 6 3.8223 -2.3096 5.0729 18 9 4.5203 -2.3412 6.2292 19 6 3.7782 -1.1472 4.3296 20 6 3.0600 -1.1177 3.1418 21 7 2.8188 -0.1487 2.1886 22 6 3.3167 1.2291 2.2056 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7094 1.1618 -3.4844 27 1 1.9348 -4.3280 3.1388 28 1 3.1960 -4.3511 5.2290 29 1 4.2997 -0.2650 4.6704 30 1 4.2788 1.2740 1.6953 31 1 2.6048 1.8790 1.6967 32 1 3.4368 1.5593 3.2374 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260851767.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:22 Heat of formation + Delta-G solvation = 3.892573 kcal Electronic energy + Delta-G solvation = -17522.286278 eV Core-core repulsion = 14590.170326 eV Total energy + Delta-G solvation = -2932.115952 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.85890 -43.09846 -38.30845 -36.10463 -35.07795 -32.84668 -31.55012 -29.27499 -27.84934 -27.28442 -24.92393 -23.15803 -22.69982 -20.73247 -18.92637 -18.35175 -18.15934 -17.31582 -16.88300 -16.61141 -16.27563 -15.97377 -15.36619 -14.90532 -14.64131 -14.14604 -14.05157 -13.87594 -13.56325 -13.46005 -12.97028 -12.85022 -12.47818 -12.39174 -12.23393 -12.03631 -11.82999 -11.35953 -11.10210 -10.78695 -10.52335 -9.31472 -8.95100 -8.16214 -6.28378 -0.14077 0.40405 1.41929 1.44143 1.52723 1.69332 1.82686 2.43571 2.76898 3.12575 3.20916 3.38659 3.64492 3.87430 4.05352 4.19785 4.33459 4.36331 4.43135 4.59768 4.76955 4.84988 4.93797 5.03073 5.05316 5.17353 5.34139 5.48672 5.57160 5.71875 5.87501 5.91737 6.14766 6.30033 6.73311 7.10505 7.38617 8.88847 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.035372 B = 0.005770 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.387539 B = 4851.547564 C = 5097.157811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.114 3.886 3 H 0.042 0.958 4 C -0.519 4.519 5 H 0.041 0.959 6 C 0.026 3.974 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.275 1.275 11 H -0.277 1.277 12 C 0.318 3.682 13 N -0.530 5.530 14 C 0.006 3.994 15 C -0.048 4.048 16 C -0.149 4.149 17 C 0.100 3.900 18 F -0.136 7.136 19 C -0.140 4.140 20 C 0.043 3.957 21 N -0.497 5.497 22 C 0.072 3.928 23 H 0.075 0.925 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.267 0.733 27 H 0.149 0.851 28 H 0.171 0.829 29 H 0.154 0.846 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.096 -1.276 12.874 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.094 3.906 3 H 0.060 0.940 4 C -0.558 4.558 5 H 0.059 0.941 6 C -0.174 4.174 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.200 1.200 11 H -0.202 1.202 12 C 0.053 3.947 13 N -0.249 5.249 14 C -0.114 4.114 15 C -0.067 4.067 16 C -0.170 4.170 17 C 0.079 3.921 18 F -0.115 7.115 19 C -0.162 4.162 20 C -0.068 4.068 21 N -0.185 5.185 22 C -0.068 4.068 23 H 0.094 0.906 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.167 0.833 28 H 0.189 0.811 29 H 0.171 0.829 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.617 -1.556 12.322 13.251 hybrid contribution 0.735 0.265 -0.453 0.903 sum 5.353 -1.291 11.870 13.085 Atomic orbital electron populations 1.21560 0.95855 0.99662 1.00386 1.17471 0.93875 0.94102 0.85136 0.93988 1.21015 1.31963 1.12240 0.90603 0.94052 1.25527 0.95018 0.95596 1.01233 1.69936 1.36824 1.23389 1.24556 0.85590 0.78584 0.78497 0.79180 1.20261 1.19985 1.20171 1.24603 0.89497 0.89107 0.91536 1.70458 1.27111 1.13010 1.14325 1.19859 1.00967 0.95786 0.94753 1.20053 0.98295 0.95640 0.92699 1.20797 0.99741 0.98879 0.97569 1.17148 0.96531 0.94689 0.83756 1.91486 1.76913 1.97071 1.45989 1.19803 1.03595 0.99638 0.93166 1.18722 1.03369 0.90669 0.94012 1.45590 1.42374 1.12370 1.18198 1.22243 1.01216 0.77838 1.05530 0.90601 0.95314 0.95438 0.92364 0.83321 0.81139 0.82856 0.90008 0.89012 0.87091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.95 71.98 0.64 -4.96 16 2 C 0.11 5.65 2.62 -12.28 -0.03 5.62 16 3 H 0.04 2.07 6.66 -2.39 -0.02 2.05 16 4 C -0.52 -28.54 8.54 25.60 0.22 -28.32 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.41 5.30 84.65 0.45 1.85 16 7 N -0.91 -49.23 11.32 21.45 0.24 -48.99 16 8 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.32 14.51 6.31 137.91 0.87 15.38 16 13 N -0.53 -25.03 11.26 -179.91 -2.03 -27.05 16 14 C 0.01 0.22 7.23 39.43 0.29 0.50 16 15 C -0.05 -1.46 10.05 22.25 0.22 -1.24 16 16 C -0.15 -3.69 9.94 22.06 0.22 -3.47 16 17 C 0.10 2.61 7.29 22.40 0.16 2.77 16 18 F -0.14 -3.30 17.26 44.97 0.78 -2.52 16 19 C -0.14 -3.94 10.03 22.37 0.22 -3.72 16 20 C 0.04 1.52 6.87 38.86 0.27 1.79 16 21 N -0.50 -18.58 3.21 -528.80 -1.70 -20.28 16 22 C 0.07 1.95 10.81 127.77 1.38 3.34 16 23 H 0.08 3.91 6.07 -2.39 -0.01 3.90 16 24 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 27 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 28 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 29 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.09 2.49 7.01 -2.38 -0.02 2.48 16 32 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -63.35 280.37 5.37 -57.98 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 1.13 Total: 6.20 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 4.91 Total: -10.47 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -3.48 Total: -96.32 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.52 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -63.35 5.37 -57.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260851767.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.874 kcal (2) G-P(sol) polarization free energy of solvation -63.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds