Wall clock time and date at job start Mon Mar 30 2020 06:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47324 * 59.99539 * 8 6 4 10 10 H 1.48494 * 109.47376 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99915 * 8 6 4 12 12 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 13 13 N 1.30081 * 124.95958 * 300.03099 * 12 2 1 14 14 C 1.35806 * 109.63816 * 179.97438 * 13 12 2 15 15 C 1.40464 * 106.95929 * 359.97438 * 14 13 12 16 16 C 1.38836 * 119.95003 * 179.97438 * 15 14 13 17 17 C 1.37857 * 119.87350 * 0.02562 * 16 15 14 18 18 C 1.38739 * 120.47686 * 359.97438 * 17 16 15 19 19 C 1.37835 * 120.49833 * 359.97438 * 18 17 16 20 20 F 1.35098 * 120.13762 * 180.02562 * 19 18 17 21 21 N 1.36088 * 124.95212 * 119.72059 * 12 2 1 22 22 C 1.46504 * 126.34645 * 0.03056 * 21 12 2 23 23 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 26 26 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 27 27 H 1.08003 * 120.06450 * 180.02562 * 16 15 14 28 28 H 1.08006 * 119.76077 * 180.02562 * 17 16 15 29 29 H 1.08007 * 119.75198 * 180.02562 * 18 17 16 30 30 H 1.08998 * 109.46995 * 89.99897 * 22 21 12 31 31 H 1.09004 * 109.46805 * 209.99874 * 22 21 12 32 32 H 1.08997 * 109.46874 * 329.99573 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0079 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5197 4.0082 12 6 2.0324 -0.7105 -1.2304 13 7 1.7778 -1.9501 -1.5314 14 6 2.3833 -2.2685 -2.7046 15 6 3.0584 -1.1173 -3.1429 16 6 3.7763 -1.1449 -4.3309 17 6 3.8241 -2.3028 -5.0776 18 6 3.1596 -3.4434 -4.6506 19 6 2.4426 -3.4359 -3.4734 20 9 1.7987 -4.5508 -3.0643 21 7 2.8137 -0.1470 -2.1917 22 6 3.3062 1.2326 -2.2119 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7094 1.1619 3.4844 27 1 4.2964 -0.2610 -4.6694 28 1 4.3835 -2.3223 -6.0013 29 1 3.2053 -4.3443 -5.2446 30 1 4.2698 1.2818 -1.7048 31 1 3.4218 1.5620 -3.2445 32 1 2.5934 1.8803 -1.7016 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260857738.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:30 Heat of formation + Delta-G solvation = 19.274063 kcal Electronic energy + Delta-G solvation = -17688.021973 eV Core-core repulsion = 14756.573012 eV Total energy + Delta-G solvation = -2931.448961 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.40808 -41.65022 -37.03033 -34.25146 -33.69835 -31.01499 -29.72280 -28.20972 -26.61801 -25.25697 -23.23294 -22.07626 -21.01268 -19.13696 -17.35360 -17.02349 -16.38076 -15.66720 -15.51919 -15.11435 -14.81708 -14.75128 -14.19283 -13.12001 -12.98202 -12.78814 -12.67703 -12.31901 -11.82455 -11.68670 -11.45714 -11.27834 -10.95392 -10.74440 -10.52309 -10.25320 -9.97472 -9.80560 -9.36772 -9.14479 -8.48888 -7.95459 -7.53569 -6.13376 -4.19120 1.18276 1.66557 3.04774 3.30089 3.33065 3.33837 3.42338 4.06028 4.38031 4.50919 4.64487 4.96169 5.00070 5.19235 5.28202 5.44080 5.46244 5.61196 5.68599 5.78865 6.02111 6.26587 6.46423 6.61357 6.71998 6.76465 6.90946 6.96878 7.14433 7.44831 7.63112 7.75416 7.94593 8.16142 8.61871 8.82013 9.45482 10.93013 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.006794 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.306058 B = 4120.423591 C = 4596.944963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.113 3.887 3 H 0.047 0.953 4 C -0.503 4.503 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.343 3.657 13 N -0.490 5.490 14 C 0.020 3.980 15 C 0.056 3.944 16 C -0.117 4.117 17 C -0.097 4.097 18 C -0.173 4.173 19 C 0.143 3.857 20 F -0.134 7.134 21 N -0.499 5.499 22 C 0.082 3.918 23 H 0.008 0.992 24 H 0.043 0.957 25 H 0.094 0.906 26 H 0.264 0.736 27 H 0.121 0.879 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.242 0.198 -12.714 13.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.092 3.908 3 H 0.064 0.936 4 C -0.542 4.542 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.530 5.530 8 Si 0.729 3.271 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.080 3.920 13 N -0.207 5.207 14 C -0.101 4.101 15 C -0.055 4.055 16 C -0.139 4.139 17 C -0.117 4.117 18 C -0.194 4.194 19 C 0.122 3.878 20 F -0.113 7.113 21 N -0.188 5.188 22 C -0.060 4.060 23 H 0.027 0.973 24 H 0.062 0.938 25 H 0.112 0.888 26 H 0.074 0.926 27 H 0.139 0.861 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.687 -0.144 -12.077 12.955 hybrid contribution 0.759 -0.057 0.415 0.867 sum 5.446 -0.201 -11.662 12.872 Atomic orbital electron populations 1.21757 0.95736 1.00858 1.00471 1.17700 0.93937 0.94379 0.84734 0.93552 1.20869 1.31852 1.12579 0.88936 0.91988 1.24892 0.94839 0.94958 0.98991 1.69845 1.36391 1.22750 1.23996 0.86494 0.79116 0.79991 0.81543 1.20254 1.21130 1.19923 1.25217 0.87368 0.88538 0.90919 1.70648 1.25613 1.12448 1.12003 1.19134 1.01805 0.93358 0.95794 1.18635 1.02837 0.90131 0.93863 1.19872 1.01709 0.99246 0.93026 1.20476 1.00113 0.91445 0.99648 1.20690 1.02068 1.00420 0.96244 1.16806 0.96413 0.80782 0.93761 1.91470 1.79476 1.49934 1.90386 1.45575 1.43363 1.10861 1.18991 1.21921 1.01194 0.79775 1.03111 0.97290 0.93763 0.88774 0.92587 0.86089 0.84998 0.84799 0.90818 0.90508 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.95 37.16 0.33 -2.79 16 2 C 0.11 2.77 2.62 -92.92 -0.24 2.52 16 3 H 0.05 1.12 6.66 -51.93 -0.35 0.77 16 4 C -0.50 -13.75 8.54 -34.44 -0.29 -14.04 16 5 H 0.06 1.77 7.74 -52.49 -0.41 1.36 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.20 11.32 55.43 0.63 -23.57 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.34 7.90 6.31 -154.80 -0.98 6.93 16 13 N -0.49 -11.97 11.26 -8.19 -0.09 -12.07 16 14 C 0.02 0.42 7.21 -84.64 -0.61 -0.19 16 15 C 0.06 1.03 6.87 -84.00 -0.58 0.45 16 16 C -0.12 -1.66 10.04 -39.50 -0.40 -2.05 16 17 C -0.10 -1.21 10.02 -39.54 -0.40 -1.61 16 18 C -0.17 -2.46 9.99 -39.54 -0.40 -2.86 16 19 C 0.14 2.67 7.34 -39.10 -0.29 2.38 16 20 F -0.13 -2.62 17.27 2.25 0.04 -2.58 16 21 N -0.50 -9.49 3.21 -118.50 -0.38 -9.87 16 22 C 0.08 1.14 10.81 59.85 0.65 1.79 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 24 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 26 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 28 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 29 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.28 7.01 -51.93 -0.36 0.92 16 LS Contribution 280.46 15.07 4.23 4.23 Total: -1.00 -30.70 280.46 -7.42 -38.12 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -3.53 Total: -2.64 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -3.29 Total: -7.81 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.16 Total: -45.51 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.70 -7.42 -38.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260857738.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.390 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds