Wall clock time and date at job start Mon Mar 30 2020 06:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47324 * 59.99539 * 8 6 4 10 10 H 1.48494 * 109.47376 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99915 * 8 6 4 12 12 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 13 13 N 1.30081 * 124.95958 * 300.03099 * 12 2 1 14 14 C 1.35806 * 109.63816 * 179.97438 * 13 12 2 15 15 C 1.40464 * 106.95929 * 359.97438 * 14 13 12 16 16 C 1.38836 * 119.95003 * 179.97438 * 15 14 13 17 17 C 1.37857 * 119.87350 * 0.02562 * 16 15 14 18 18 C 1.38739 * 120.47686 * 359.97438 * 17 16 15 19 19 C 1.37835 * 120.49833 * 359.97438 * 18 17 16 20 20 F 1.35098 * 120.13762 * 180.02562 * 19 18 17 21 21 N 1.36088 * 124.95212 * 119.72059 * 12 2 1 22 22 C 1.46504 * 126.34645 * 0.03056 * 21 12 2 23 23 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 26 26 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 27 27 H 1.08003 * 120.06450 * 180.02562 * 16 15 14 28 28 H 1.08006 * 119.76077 * 180.02562 * 17 16 15 29 29 H 1.08007 * 119.75198 * 180.02562 * 18 17 16 30 30 H 1.08998 * 109.46995 * 89.99897 * 22 21 12 31 31 H 1.09004 * 109.46805 * 209.99874 * 22 21 12 32 32 H 1.08997 * 109.46874 * 329.99573 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0079 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5197 4.0082 12 6 2.0324 -0.7105 -1.2304 13 7 1.7778 -1.9501 -1.5314 14 6 2.3833 -2.2685 -2.7046 15 6 3.0584 -1.1173 -3.1429 16 6 3.7763 -1.1449 -4.3309 17 6 3.8241 -2.3028 -5.0776 18 6 3.1596 -3.4434 -4.6506 19 6 2.4426 -3.4359 -3.4734 20 9 1.7987 -4.5508 -3.0643 21 7 2.8137 -0.1470 -2.1917 22 6 3.3062 1.2326 -2.2119 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7094 1.1619 3.4844 27 1 4.2964 -0.2610 -4.6694 28 1 4.3835 -2.3223 -6.0013 29 1 3.2053 -4.3443 -5.2446 30 1 4.2698 1.2818 -1.7048 31 1 3.4218 1.5620 -3.2445 32 1 2.5934 1.8803 -1.7016 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260857738.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:29 Heat of formation + Delta-G solvation = 1.171240 kcal Electronic energy + Delta-G solvation = -17688.806970 eV Core-core repulsion = 14756.573012 eV Total energy + Delta-G solvation = -2932.233958 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.80810 -43.07366 -38.31325 -36.13705 -35.10192 -32.91773 -30.94358 -29.65541 -27.83426 -27.32323 -24.89089 -23.35506 -22.45791 -20.75361 -18.75651 -18.43068 -18.22658 -17.06537 -17.00383 -16.61400 -16.33307 -16.14933 -15.58059 -14.85092 -14.54115 -14.18134 -13.98325 -13.59610 -13.57150 -13.01764 -12.91614 -12.86089 -12.66536 -12.49881 -12.25835 -12.17800 -11.86853 -11.21155 -11.15892 -10.87093 -10.55424 -9.28573 -8.90753 -8.19392 -6.31691 -0.10998 0.44220 1.38787 1.41567 1.48844 1.73997 1.88889 2.41110 2.74331 3.08981 3.21146 3.32789 3.79649 3.89467 4.10622 4.23175 4.36849 4.40247 4.57205 4.62924 4.76038 4.81315 4.94850 5.00830 5.16785 5.31638 5.40595 5.44311 5.48757 5.69977 5.83770 5.95298 6.12166 6.30948 6.69176 7.07791 7.35103 8.85626 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.006794 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.306058 B = 4120.423591 C = 4596.944963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.117 3.883 3 H 0.046 0.954 4 C -0.524 4.524 5 H 0.037 0.963 6 C 0.028 3.972 7 N -0.907 5.907 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.272 1.272 11 H -0.282 1.282 12 C 0.315 3.685 13 N -0.538 5.538 14 C -0.033 4.033 15 C 0.049 3.951 16 C -0.110 4.110 17 C -0.074 4.074 18 C -0.151 4.151 19 C 0.102 3.898 20 F -0.152 7.152 21 N -0.497 5.497 22 C 0.074 3.926 23 H 0.028 0.972 24 H 0.022 0.978 25 H 0.077 0.923 26 H 0.268 0.732 27 H 0.164 0.836 28 H 0.189 0.811 29 H 0.169 0.831 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.336 0.761 -15.396 17.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 H 0.064 0.936 4 C -0.563 4.563 5 H 0.055 0.945 6 C -0.172 4.172 7 N -0.545 5.545 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.196 1.196 11 H -0.208 1.208 12 C 0.049 3.951 13 N -0.258 5.258 14 C -0.152 4.152 15 C -0.062 4.062 16 C -0.130 4.130 17 C -0.093 4.093 18 C -0.172 4.172 19 C 0.082 3.918 20 F -0.131 7.131 21 N -0.185 5.185 22 C -0.067 4.067 23 H 0.047 0.953 24 H 0.041 0.959 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.181 0.819 28 H 0.206 0.794 29 H 0.187 0.813 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.794 0.446 -14.775 16.268 hybrid contribution 0.176 -0.281 1.064 1.115 sum 6.970 0.165 -13.710 15.381 Atomic orbital electron populations 1.21565 0.96070 0.99355 1.00498 1.17446 0.93713 0.94158 0.85049 0.93599 1.20986 1.32209 1.12254 0.90835 0.94465 1.25517 0.94953 0.95605 1.01162 1.69912 1.36586 1.23294 1.24711 0.85671 0.78827 0.78552 0.78972 1.19701 1.19624 1.20760 1.24585 0.89886 0.88795 0.91808 1.70437 1.27308 1.13694 1.14328 1.19640 1.03864 0.95813 0.95915 1.19123 1.03206 0.88816 0.95021 1.20471 1.00174 1.01517 0.90868 1.21192 0.98032 0.89554 1.00519 1.21234 0.99339 1.02550 0.94071 1.17396 0.98717 0.80045 0.95675 1.91410 1.80219 1.50594 1.90883 1.45664 1.42383 1.12419 1.18033 1.22271 1.01167 0.77304 1.05934 0.95310 0.95894 0.90409 0.92234 0.81874 0.79407 0.81346 0.89938 0.86341 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.95 71.98 0.64 -5.22 16 2 C 0.12 5.97 2.62 -12.28 -0.03 5.93 16 3 H 0.05 2.30 6.66 -2.39 -0.02 2.28 16 4 C -0.52 -29.91 8.54 25.60 0.22 -29.69 16 5 H 0.04 2.25 7.74 -2.91 -0.02 2.23 16 6 C 0.03 1.53 5.30 84.66 0.45 1.98 16 7 N -0.91 -50.10 11.32 21.45 0.24 -49.85 16 8 Si 0.95 44.32 29.54 68.60 2.03 46.35 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 C 0.31 15.05 6.31 137.91 0.87 15.92 16 13 N -0.54 -27.77 11.26 -179.84 -2.02 -29.80 16 14 C -0.03 -1.43 7.21 39.47 0.28 -1.15 16 15 C 0.05 1.72 6.87 38.85 0.27 1.99 16 16 C -0.11 -2.56 10.04 22.32 0.22 -2.34 16 17 C -0.07 -1.40 10.02 22.30 0.22 -1.18 16 18 C -0.15 -3.75 9.99 22.29 0.22 -3.53 16 19 C 0.10 3.81 7.34 22.58 0.17 3.97 16 20 F -0.15 -6.17 17.27 44.97 0.78 -5.39 16 21 N -0.50 -18.69 3.21 -528.84 -1.70 -20.39 16 22 C 0.07 1.91 10.81 127.77 1.38 3.29 16 23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 4.13 6.07 -2.39 -0.01 4.12 16 26 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 27 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 28 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 29 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.09 2.37 7.01 -2.39 -0.02 2.36 16 Total: -1.00 -72.32 280.46 5.38 -66.94 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: 1.13 Total: 2.16 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 4.92 Total: -10.02 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -3.48 Total: -100.04 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.78 Total: -5.39 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -72.32 5.38 -66.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260857738.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.111 kcal (2) G-P(sol) polarization free energy of solvation -72.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds