Wall clock time and date at job start Mon Mar 30 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36627 * 119.67527 * 2 1 4 4 C 1.39702 * 119.91527 * 180.02562 * 3 2 1 5 5 N 1.35836 * 133.55664 * 179.97438 * 4 3 2 6 6 C 1.30090 * 109.64538 * 179.74083 * 5 4 3 7 7 C 1.50695 * 124.95192 * 180.28855 * 6 5 4 8 8 C 1.52994 * 109.47495 * 305.19181 * 7 6 5 9 9 C 1.50699 * 109.47291 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00032 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99941 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00229 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99608 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47284 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46879 * 119.99879 * 13 11 9 16 16 H 1.48504 * 109.46693 * 239.99356 * 13 11 9 17 17 N 1.36100 * 110.09800 * 0.46018 * 6 5 4 18 18 H 0.97001 * 126.35220 * 179.81808 * 17 6 5 19 19 C 1.38057 * 107.30168 * 359.54493 * 17 6 5 20 20 C 1.38794 * 134.11905 * 180.26190 * 19 17 6 21 21 C 1.38087 * 119.67121 * 180.02562 * 20 19 17 22 22 F 1.35102 * 119.80369 * 179.97438 * 21 20 19 23 23 H 1.08994 * 109.46905 * 90.00764 * 1 2 3 24 24 H 1.08998 * 109.46940 * 210.00566 * 1 2 3 25 25 H 1.08997 * 109.47500 * 330.00501 * 1 2 3 26 26 H 1.07998 * 120.03717 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.47123 * 65.19395 * 7 6 5 28 28 H 1.09009 * 109.46971 * 185.18942 * 7 6 5 29 29 H 1.09003 * 109.46840 * 299.99768 * 8 7 6 30 30 H 1.08999 * 109.47171 * 59.99928 * 8 7 6 31 31 H 0.96997 * 120.00090 * 180.02562 * 12 11 9 32 32 H 1.07992 * 120.16039 * 0.03265 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.1871 0.0000 4 6 3.5804 1.1929 -0.0005 5 7 4.5123 2.1812 -0.0011 6 6 5.7038 1.6590 0.0041 7 6 6.9903 2.4436 0.0114 8 6 6.9988 3.4204 -1.1661 9 6 8.2856 4.2046 -1.1591 10 1 9.0235 4.0246 -0.3912 11 6 8.5205 5.1526 -2.1323 12 7 7.6218 5.3722 -3.0670 13 14 10.1155 6.1251 -2.1231 14 1 10.9524 5.6925 -0.9753 15 1 10.8500 5.8832 -3.3909 16 1 9.8115 7.5731 -1.9956 17 7 5.6190 0.3006 -0.0019 18 1 6.3629 -0.3219 -0.0023 19 6 4.2779 -0.0271 -0.0010 20 6 3.5758 -1.2243 -0.0006 21 6 2.1950 -1.2070 -0.0001 22 9 1.5089 -2.3709 -0.0003 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5137 26 1 1.6387 2.1196 -0.0004 27 1 7.0714 2.9997 0.9454 28 1 7.8339 1.7590 -0.0783 29 1 6.9177 2.8642 -2.1000 30 1 6.1553 4.1049 -1.0764 31 1 7.7873 6.0388 -3.7518 32 1 4.1067 -2.1647 -0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260866248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:19 Heat of formation + Delta-G solvation = 1.974603 kcal Electronic energy + Delta-G solvation = -16810.259104 eV Core-core repulsion = 13878.059982 eV Total energy + Delta-G solvation = -2932.199121 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.89010 -41.93341 -37.50200 -34.00742 -32.99599 -32.02235 -31.08448 -28.77647 -26.77782 -25.18447 -22.62307 -21.79723 -21.46942 -19.92020 -18.19267 -17.24599 -16.25353 -16.17213 -15.78741 -15.19484 -14.91286 -14.44619 -14.12370 -13.49969 -13.37724 -13.17407 -12.94241 -12.75608 -12.25150 -12.06674 -11.40002 -11.34692 -11.02831 -10.92228 -10.66786 -10.48521 -10.07452 -9.74280 -9.57800 -9.19231 -8.39807 -8.24220 -7.82577 -6.03925 -4.08361 0.91255 1.39308 2.93933 3.00821 3.29051 3.36821 3.39832 3.82516 4.29406 4.35156 4.42331 4.64494 4.86012 5.23104 5.29047 5.30374 5.32130 5.53038 5.55258 5.74521 5.86068 5.94528 6.00514 6.23590 6.28292 6.41648 6.60607 6.73043 6.90120 7.51290 7.60337 7.74858 7.95534 8.20753 8.30486 8.98508 9.55990 11.07085 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.051661 B = 0.004058 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.868135 B = 6897.540277 C = 7204.195145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.130 4.130 3 C -0.039 4.039 4 C 0.051 3.949 5 N -0.487 5.487 6 C 0.320 3.680 7 C -0.043 4.043 8 C 0.032 3.968 9 C -0.527 4.527 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.890 5.890 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.283 1.283 17 N -0.602 5.602 18 H 0.422 0.578 19 C 0.055 3.945 20 C -0.141 4.141 21 C 0.101 3.899 22 F -0.139 7.139 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.138 0.862 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.016 0.984 30 H 0.035 0.965 31 H 0.261 0.739 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.419 -12.946 6.705 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.134 4.134 3 C -0.059 4.059 4 C -0.068 4.068 5 N -0.207 5.207 6 C 0.054 3.946 7 C -0.082 4.082 8 C -0.006 4.006 9 C -0.565 4.565 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.213 5.213 18 H 0.261 0.739 19 C -0.056 4.056 20 C -0.163 4.163 21 C 0.081 3.919 22 F -0.118 7.118 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.156 0.844 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.736 -11.983 6.548 16.770 hybrid contribution 1.398 -0.901 -0.189 1.674 sum -8.338 -12.884 6.358 16.612 Atomic orbital electron populations 1.20655 0.89962 1.03063 1.02665 1.19278 0.96901 0.91171 1.06007 1.19717 0.90314 0.97620 0.98232 1.19246 0.94192 0.88617 1.04753 1.70592 0.97300 1.29867 1.22910 1.24595 0.97233 0.79250 0.93519 1.20656 0.86218 0.97177 1.04137 1.19069 0.98219 0.92909 0.90406 1.21194 1.02838 1.20440 1.12051 0.92359 1.25008 0.96774 0.97007 0.95454 1.69988 1.34296 1.33751 1.14804 0.86517 0.83482 0.79987 0.77883 1.19692 1.21038 1.20915 1.43304 1.05961 1.08709 1.63295 0.73935 1.18421 0.84827 0.95910 1.06424 1.19592 0.91989 0.96267 1.08493 1.16879 0.88631 0.80990 1.05437 1.91453 1.79538 1.46598 1.94189 0.91032 0.91431 0.91005 0.84373 0.89294 0.91003 0.96536 0.94616 0.92909 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.81 36.01 0.35 -0.68 16 2 C -0.13 -1.68 5.85 -104.95 -0.61 -2.29 16 3 C -0.04 -0.58 9.66 -39.62 -0.38 -0.96 16 4 C 0.05 0.90 7.23 -84.68 -0.61 0.29 16 5 N -0.49 -9.88 11.21 -8.22 -0.09 -9.97 16 6 C 0.32 5.90 7.37 -154.78 -1.14 4.75 16 7 C -0.04 -0.82 5.78 -27.89 -0.16 -0.98 16 8 C 0.03 0.81 4.91 -27.89 -0.14 0.67 16 9 C -0.53 -14.31 9.11 -34.44 -0.31 -14.63 16 10 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 13 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 N -0.60 -8.97 6.23 -8.00 -0.05 -9.02 16 18 H 0.42 4.69 8.96 -40.82 -0.37 4.32 16 19 C 0.06 0.86 7.30 -83.99 -0.61 0.25 16 20 C -0.14 -1.88 10.05 -39.43 -0.40 -2.28 16 21 C 0.10 1.34 7.23 -39.38 -0.28 1.06 16 22 F -0.14 -1.76 16.43 2.25 0.04 -1.72 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.61 7.61 -51.93 -0.40 0.21 16 25 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 26 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 28 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 285.31 15.07 4.30 4.30 Total: -1.00 -31.53 285.31 -8.17 -39.70 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -3.68 Total: -0.37 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -4.40 Total: -13.22 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.59 Total: -44.76 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.53 -8.17 -39.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260866248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.677 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds