Wall clock time and date at job start Mon Mar 30 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36627 * 119.67527 * 2 1 4 4 C 1.39702 * 119.91527 * 180.02562 * 3 2 1 5 5 N 1.35836 * 133.55664 * 179.97438 * 4 3 2 6 6 C 1.30090 * 109.64538 * 179.74083 * 5 4 3 7 7 C 1.50695 * 124.95192 * 180.28855 * 6 5 4 8 8 C 1.52994 * 109.47495 * 305.19181 * 7 6 5 9 9 C 1.50699 * 109.47291 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00032 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99941 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00229 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99608 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47284 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46879 * 119.99879 * 13 11 9 16 16 H 1.48504 * 109.46693 * 239.99356 * 13 11 9 17 17 N 1.36100 * 110.09800 * 0.46018 * 6 5 4 18 18 H 0.97001 * 126.35220 * 179.81808 * 17 6 5 19 19 C 1.38057 * 107.30168 * 359.54493 * 17 6 5 20 20 C 1.38794 * 134.11905 * 180.26190 * 19 17 6 21 21 C 1.38087 * 119.67121 * 180.02562 * 20 19 17 22 22 F 1.35102 * 119.80369 * 179.97438 * 21 20 19 23 23 H 1.08994 * 109.46905 * 90.00764 * 1 2 3 24 24 H 1.08998 * 109.46940 * 210.00566 * 1 2 3 25 25 H 1.08997 * 109.47500 * 330.00501 * 1 2 3 26 26 H 1.07998 * 120.03717 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.47123 * 65.19395 * 7 6 5 28 28 H 1.09009 * 109.46971 * 185.18942 * 7 6 5 29 29 H 1.09003 * 109.46840 * 299.99768 * 8 7 6 30 30 H 1.08999 * 109.47171 * 59.99928 * 8 7 6 31 31 H 0.96997 * 120.00090 * 180.02562 * 12 11 9 32 32 H 1.07992 * 120.16039 * 0.03265 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.1871 0.0000 4 6 3.5804 1.1929 -0.0005 5 7 4.5123 2.1812 -0.0011 6 6 5.7038 1.6590 0.0041 7 6 6.9903 2.4436 0.0114 8 6 6.9988 3.4204 -1.1661 9 6 8.2856 4.2046 -1.1591 10 1 9.0235 4.0246 -0.3912 11 6 8.5205 5.1526 -2.1323 12 7 7.6218 5.3722 -3.0670 13 14 10.1155 6.1251 -2.1231 14 1 10.9524 5.6925 -0.9753 15 1 10.8500 5.8832 -3.3909 16 1 9.8115 7.5731 -1.9956 17 7 5.6190 0.3006 -0.0019 18 1 6.3629 -0.3219 -0.0023 19 6 4.2779 -0.0271 -0.0010 20 6 3.5758 -1.2243 -0.0006 21 6 2.1950 -1.2070 -0.0001 22 9 1.5089 -2.3709 -0.0003 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5137 26 1 1.6387 2.1196 -0.0004 27 1 7.0714 2.9997 0.9454 28 1 7.8339 1.7590 -0.0783 29 1 6.9177 2.8642 -2.1000 30 1 6.1553 4.1049 -1.0764 31 1 7.7873 6.0388 -3.7518 32 1 4.1067 -2.1647 -0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260866248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:19 Heat of formation + Delta-G solvation = -16.790906 kcal Electronic energy + Delta-G solvation = -16811.072837 eV Core-core repulsion = 13878.059982 eV Total energy + Delta-G solvation = -2933.012855 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.92909 -43.18210 -38.63297 -35.86183 -34.31213 -33.56664 -32.46245 -30.05675 -28.21510 -26.66483 -24.06282 -23.23372 -22.75057 -21.32854 -19.35223 -18.75064 -18.05894 -17.27794 -16.90124 -16.52423 -16.27971 -16.05680 -15.24299 -14.94502 -14.76495 -14.35344 -14.11747 -14.01662 -13.90425 -13.18498 -12.91874 -12.83405 -12.50052 -12.43778 -12.18342 -11.92799 -11.77292 -11.48598 -11.23390 -10.98658 -10.54712 -9.34699 -9.07285 -8.17500 -6.30007 -0.25025 0.28119 1.44058 1.45000 1.57691 1.65435 1.81162 2.43994 2.62753 3.11695 3.16892 3.26311 3.54374 3.83092 4.06071 4.17458 4.24106 4.48211 4.56291 4.65674 4.71822 4.81431 4.84473 5.00923 5.05438 5.17393 5.32830 5.44590 5.50440 5.65622 5.80258 5.85258 6.18775 6.38985 6.88195 6.90266 7.40007 8.94913 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.051661 B = 0.004058 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.868135 B = 6897.540277 C = 7204.195145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.121 4.121 3 C -0.053 4.053 4 C 0.013 3.987 5 N -0.530 5.530 6 C 0.304 3.696 7 C -0.028 4.028 8 C 0.040 3.960 9 C -0.540 4.540 10 H 0.074 0.926 11 C -0.002 4.002 12 N -0.936 5.936 13 Si 0.969 3.031 14 H -0.255 1.255 15 H -0.281 1.281 16 H -0.283 1.283 17 N -0.583 5.583 18 H 0.439 0.561 19 C 0.051 3.949 20 C -0.136 4.136 21 C 0.103 3.897 22 F -0.132 7.132 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.145 0.855 27 H 0.095 0.905 28 H 0.101 0.899 29 H -0.014 1.014 30 H -0.005 1.005 31 H 0.262 0.738 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.097 -14.531 7.605 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.125 4.125 3 C -0.072 4.072 4 C -0.105 4.105 5 N -0.251 5.251 6 C 0.037 3.963 7 C -0.067 4.067 8 C 0.002 3.998 9 C -0.578 4.578 10 H 0.092 0.908 11 C -0.200 4.200 12 N -0.576 5.576 13 Si 0.793 3.207 14 H -0.178 1.178 15 H -0.206 1.206 16 H -0.209 1.209 17 N -0.196 5.196 18 H 0.282 0.718 19 C -0.060 4.060 20 C -0.157 4.157 21 C 0.082 3.918 22 F -0.110 7.110 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.163 0.837 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.004 0.996 30 H 0.014 0.986 31 H 0.071 0.929 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.400 -13.610 7.468 18.148 hybrid contribution 1.139 -0.498 -0.472 1.330 sum -8.261 -14.108 6.996 17.783 Atomic orbital electron populations 1.20760 0.87508 1.04325 1.03739 1.19608 0.98625 0.90348 1.03879 1.19918 0.89517 0.98840 0.98923 1.19669 0.95255 0.88985 1.06610 1.70466 0.98692 1.32061 1.23898 1.24181 0.96417 0.80628 0.95123 1.20338 0.88031 0.96716 1.01572 1.18823 0.96188 0.93120 0.91673 1.21698 1.03606 1.20369 1.12139 0.90751 1.26022 1.00548 0.98340 0.95049 1.70147 1.36794 1.34781 1.15856 0.85345 0.78923 0.77981 0.78442 1.17819 1.20644 1.20853 1.43058 1.06542 1.07727 1.62294 0.71830 1.18591 0.84764 0.96056 1.06618 1.19846 0.92126 0.96548 1.07227 1.17006 0.88819 0.81308 1.04635 1.91478 1.79356 1.46160 1.94028 0.89915 0.90381 0.89603 0.83677 0.88667 0.88050 0.99561 0.98620 0.92882 0.82086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 9.81 71.24 0.70 -1.10 16 2 C -0.12 -2.91 5.85 -20.07 -0.12 -3.03 16 3 C -0.05 -1.53 9.66 22.25 0.21 -1.32 16 4 C 0.01 0.48 7.23 39.44 0.29 0.76 16 5 N -0.53 -22.26 11.21 -179.91 -2.02 -24.27 16 6 C 0.30 11.32 7.37 137.91 1.02 12.34 16 7 C -0.03 -1.07 5.78 29.84 0.17 -0.89 16 8 C 0.04 2.10 4.91 29.85 0.15 2.24 16 9 C -0.54 -29.58 9.11 25.60 0.23 -29.35 16 10 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 11 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 12 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16 13 Si 0.97 43.31 29.54 68.60 2.03 45.33 16 14 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 N -0.58 -16.88 6.23 -179.21 -1.12 -18.00 16 18 H 0.44 8.98 8.96 -92.71 -0.83 8.14 16 19 C 0.05 1.54 7.30 38.85 0.28 1.82 16 20 C -0.14 -3.29 10.05 22.37 0.22 -3.07 16 21 C 0.10 2.48 7.23 22.40 0.16 2.65 16 22 F -0.13 -2.93 16.43 44.97 0.74 -2.19 16 23 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.08 1.17 7.61 -2.39 -0.02 1.15 16 25 H 0.09 1.22 8.07 -2.39 -0.02 1.20 16 26 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 27 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 28 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 29 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 30 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.26 15.12 8.31 -92.71 -0.77 14.34 16 32 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -70.02 285.31 4.01 -66.01 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.32 Total: 8.83 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 3.78 Total: -18.58 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -2.85 Total: -99.39 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.74 Total: -2.19 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -70.02 4.01 -66.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260866248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.215 kcal (2) G-P(sol) polarization free energy of solvation -70.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds