Wall clock time and date at job start Mon Mar 30 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46713 * 2 1 4 4 C 1.50694 * 109.47496 * 120.00176 * 2 1 3 5 5 H 1.08003 * 120.00149 * 119.99694 * 4 2 1 6 6 C 1.37879 * 120.00104 * 300.00300 * 4 2 1 7 7 N 1.31512 * 120.00273 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99967 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47136 * 89.99951 * 8 6 4 10 10 H 1.48497 * 109.47450 * 209.99714 * 8 6 4 11 11 H 1.48500 * 109.46924 * 330.00236 * 8 6 4 12 12 C 1.50702 * 109.47140 * 240.00813 * 2 1 3 13 13 C 1.38321 * 119.72311 * 299.97021 * 12 2 1 14 14 C 1.38029 * 119.28784 * 179.76096 * 13 12 2 15 15 C 1.38814 * 120.16150 * 0.37149 * 14 13 12 16 16 C 1.38885 * 121.15355 * 359.80503 * 15 14 13 17 17 C 1.37690 * 119.73308 * 120.00065 * 12 2 1 18 18 C 1.50867 * 115.38405 * 179.84482 * 16 15 14 19 19 C 1.54129 * 110.54036 * 20.30110 * 18 16 15 20 20 H 1.09007 * 111.09927 * 213.86710 * 19 18 16 21 21 C 1.53008 * 111.10110 * 89.77479 * 19 18 16 22 22 S 1.77438 * 130.57304 * 180.10947 * 15 14 13 23 23 H 1.08998 * 109.47473 * 299.99452 * 1 2 3 24 24 H 1.08998 * 109.47565 * 59.99794 * 1 2 3 25 25 H 1.09004 * 109.47172 * 179.97438 * 1 2 3 26 26 H 0.96996 * 120.00237 * 179.97438 * 7 6 4 27 27 H 1.07997 * 120.35890 * 359.96095 * 13 12 2 28 28 H 1.08004 * 119.91690 * 180.02562 * 14 13 12 29 29 H 1.08004 * 119.46907 * 359.97438 * 17 12 2 30 30 H 1.09008 * 109.27181 * 140.58994 * 18 16 15 31 31 H 1.09006 * 109.27229 * 260.08902 * 18 16 15 32 32 H 1.09004 * 109.46665 * 60.00269 * 21 19 18 33 33 H 1.08993 * 109.47330 * 179.97438 * 21 19 18 34 34 H 1.08994 * 109.46745 * 300.00680 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8743 2.6994 10 1 0.9770 1.9951 3.9072 11 1 0.8490 2.1772 1.4924 12 6 2.0323 -0.7102 -1.2306 13 6 1.6951 -2.0347 -1.4436 14 6 2.1560 -2.6750 -2.5762 15 6 2.9555 -1.9954 -3.4851 16 6 3.3048 -0.6667 -3.2817 17 6 2.8235 -0.0357 -2.1332 18 6 4.1805 -0.0576 -4.3486 19 6 4.0827 -0.8678 -5.6561 20 1 5.0336 -0.8688 -6.1891 21 6 2.9554 -0.3418 -6.5470 22 16 3.6876 -2.5363 -5.0082 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.9033 -0.5282 4.4375 27 1 1.0752 -2.5613 -0.7331 28 1 1.8986 -3.7089 -2.7529 29 1 3.0762 0.9982 -1.9495 30 1 3.8597 0.9673 -4.5355 31 1 5.2152 -0.0536 -4.0057 32 1 3.1469 0.7018 -6.7970 33 1 2.9103 -0.9318 -7.4623 34 1 2.0066 -0.4201 -6.0165 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261019514.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:12 Heat of formation + Delta-G solvation = 13.856743 kcal Electronic energy + Delta-G solvation = -15568.392296 eV Core-core repulsion = 13170.628848 eV Total energy + Delta-G solvation = -2397.763448 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.19214 -35.93112 -34.02545 -31.71125 -30.66853 -29.11335 -26.57790 -25.10678 -23.24939 -22.00440 -21.53282 -19.05759 -17.33845 -16.66423 -15.22261 -15.12227 -15.02001 -14.71446 -14.16794 -13.37670 -13.26555 -12.83688 -12.71859 -12.60948 -12.44190 -12.21189 -11.74971 -11.52077 -11.35140 -11.08059 -10.97398 -10.69400 -10.32061 -10.05462 -9.83637 -9.42678 -9.28209 -8.84304 -8.59728 -8.30346 -7.06762 -6.11881 -4.12252 1.60329 1.78540 1.87902 2.45067 3.23518 3.33758 3.36353 4.17410 4.36014 4.47315 4.67719 4.80427 5.18041 5.21230 5.26431 5.49921 5.56176 5.66369 5.69597 5.71660 5.90171 5.97911 6.00677 6.19894 6.28627 6.41360 6.47231 6.61730 6.73194 6.82977 6.96488 7.09224 7.43855 7.53582 7.68382 8.45884 8.92252 9.48727 11.00871 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.041821 B = 0.005593 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.352776 B = 5004.847339 C = 5219.601783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.038 3.962 3 H 0.035 0.965 4 C -0.510 4.510 5 H 0.077 0.923 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.267 1.267 12 C -0.021 4.021 13 C -0.089 4.089 14 C -0.090 4.090 15 C -0.098 4.098 16 C -0.109 4.109 17 C -0.105 4.105 18 C -0.081 4.081 19 C -0.053 4.053 20 H 0.115 0.885 21 C -0.138 4.138 22 S -0.174 6.174 23 H 0.042 0.958 24 H 0.030 0.970 25 H 0.055 0.945 26 H 0.265 0.735 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 1.784 -17.099 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.019 3.981 3 H 0.053 0.947 4 C -0.548 4.548 5 H 0.095 0.905 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.192 1.192 12 C -0.022 4.022 13 C -0.109 4.109 14 C -0.113 4.113 15 C -0.210 4.210 16 C -0.114 4.114 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.181 4.181 20 H 0.133 0.867 21 C -0.197 4.197 22 S 0.066 5.934 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.331 0.612 -17.497 17.559 hybrid contribution -0.735 1.865 0.944 2.216 sum 0.596 2.477 -16.553 16.748 Atomic orbital electron populations 1.22166 0.98254 1.01033 0.98679 1.18365 0.92027 0.96153 0.91529 0.94666 1.20942 1.32258 1.13642 0.87962 0.90506 1.24994 0.95673 0.96606 0.95771 1.69885 1.45428 1.40274 0.97955 0.86843 0.80612 0.83773 0.76923 1.20544 1.22492 1.19179 1.20059 0.93663 0.93904 0.94624 1.21069 0.99630 0.94589 0.95601 1.20385 0.97496 0.99348 0.94099 1.21678 1.04040 0.96495 0.98747 1.20642 0.99804 0.93832 0.97089 1.20735 0.98840 0.99835 0.93064 1.20922 1.00293 0.99853 0.90778 1.23969 1.02546 0.93343 0.98266 0.86738 1.21966 0.97741 1.00838 0.99153 1.85827 1.75355 1.13092 1.19077 0.93987 0.95068 0.92625 0.92544 0.84794 0.86347 0.86531 0.89628 0.89361 0.91576 0.91714 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.48 37.15 0.32 -2.72 16 2 C 0.04 0.87 2.06 -92.93 -0.19 0.68 16 3 H 0.04 0.82 6.89 -51.93 -0.36 0.46 16 4 C -0.51 -13.93 8.82 -34.44 -0.30 -14.23 16 5 H 0.08 2.30 7.84 -52.48 -0.41 1.89 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.02 13.96 55.43 0.77 -26.24 16 8 Si 0.89 21.47 24.37 -169.99 -4.14 17.33 16 9 H -0.28 -6.55 6.87 56.52 0.39 -6.16 16 10 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.27 -6.15 6.53 56.52 0.37 -5.78 16 12 C -0.02 -0.42 4.73 -104.79 -0.50 -0.92 16 13 C -0.09 -1.72 8.71 -39.63 -0.35 -2.06 16 14 C -0.09 -1.58 10.05 -39.44 -0.40 -1.97 16 15 C -0.10 -1.66 6.48 -39.13 -0.25 -1.91 16 16 C -0.11 -1.78 5.98 -103.79 -0.62 -2.40 16 17 C -0.11 -1.92 9.60 -39.27 -0.38 -2.29 16 18 C -0.08 -1.00 5.82 -27.21 -0.16 -1.16 16 19 C -0.05 -0.58 4.04 -26.14 -0.11 -0.69 16 20 H 0.11 1.02 8.14 -51.92 -0.42 0.60 16 21 C -0.14 -1.32 9.30 37.16 0.35 -0.98 16 22 S -0.17 -2.50 22.56 -107.50 -2.43 -4.93 16 23 H 0.04 0.92 3.27 -51.93 -0.17 0.75 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 1.12 7.38 -51.93 -0.38 0.74 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.13 2.57 7.58 -52.49 -0.40 2.17 16 28 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 29 H 0.12 1.96 7.90 -52.48 -0.41 1.54 16 30 H 0.09 0.92 7.91 -51.92 -0.41 0.51 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 284.90 15.07 4.29 4.29 Total: -1.00 -29.68 284.90 -8.87 -38.55 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.69 Total: -0.28 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: -2.68 Total: -28.73 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.77 Total: -26.24 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.14 Total: 17.33 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -2.43 Total: -4.93 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.68 -8.87 -38.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261019514.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.412 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds