Wall clock time and date at job start Mon Mar 30 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46713 * 2 1 4 4 C 1.50694 * 109.47496 * 120.00176 * 2 1 3 5 5 H 1.08003 * 120.00149 * 119.99694 * 4 2 1 6 6 C 1.37879 * 120.00104 * 300.00300 * 4 2 1 7 7 N 1.31512 * 120.00273 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99967 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47136 * 89.99951 * 8 6 4 10 10 H 1.48497 * 109.47450 * 209.99714 * 8 6 4 11 11 H 1.48500 * 109.46924 * 330.00236 * 8 6 4 12 12 C 1.50702 * 109.47140 * 240.00813 * 2 1 3 13 13 C 1.38321 * 119.72311 * 299.97021 * 12 2 1 14 14 C 1.38029 * 119.28784 * 179.76096 * 13 12 2 15 15 C 1.38814 * 120.16150 * 0.37149 * 14 13 12 16 16 C 1.38885 * 121.15355 * 359.80503 * 15 14 13 17 17 C 1.37690 * 119.73308 * 120.00065 * 12 2 1 18 18 C 1.50867 * 115.38405 * 179.84482 * 16 15 14 19 19 C 1.54129 * 110.54036 * 20.30110 * 18 16 15 20 20 H 1.09007 * 111.09927 * 213.86710 * 19 18 16 21 21 C 1.53008 * 111.10110 * 89.77479 * 19 18 16 22 22 S 1.77438 * 130.57304 * 180.10947 * 15 14 13 23 23 H 1.08998 * 109.47473 * 299.99452 * 1 2 3 24 24 H 1.08998 * 109.47565 * 59.99794 * 1 2 3 25 25 H 1.09004 * 109.47172 * 179.97438 * 1 2 3 26 26 H 0.96996 * 120.00237 * 179.97438 * 7 6 4 27 27 H 1.07997 * 120.35890 * 359.96095 * 13 12 2 28 28 H 1.08004 * 119.91690 * 180.02562 * 14 13 12 29 29 H 1.08004 * 119.46907 * 359.97438 * 17 12 2 30 30 H 1.09008 * 109.27181 * 140.58994 * 18 16 15 31 31 H 1.09006 * 109.27229 * 260.08902 * 18 16 15 32 32 H 1.09004 * 109.46665 * 60.00269 * 21 19 18 33 33 H 1.08993 * 109.47330 * 179.97438 * 21 19 18 34 34 H 1.08994 * 109.46745 * 300.00680 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8743 2.6994 10 1 0.9770 1.9951 3.9072 11 1 0.8490 2.1772 1.4924 12 6 2.0323 -0.7102 -1.2306 13 6 1.6951 -2.0347 -1.4436 14 6 2.1560 -2.6750 -2.5762 15 6 2.9555 -1.9954 -3.4851 16 6 3.3048 -0.6667 -3.2817 17 6 2.8235 -0.0357 -2.1332 18 6 4.1805 -0.0576 -4.3486 19 6 4.0827 -0.8678 -5.6561 20 1 5.0336 -0.8688 -6.1891 21 6 2.9554 -0.3418 -6.5470 22 16 3.6876 -2.5363 -5.0082 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.9033 -0.5282 4.4375 27 1 1.0752 -2.5613 -0.7331 28 1 1.8986 -3.7089 -2.7529 29 1 3.0762 0.9982 -1.9495 30 1 3.8597 0.9673 -4.5355 31 1 5.2152 -0.0536 -4.0057 32 1 3.1469 0.7018 -6.7970 33 1 2.9103 -0.9318 -7.4623 34 1 2.0066 -0.4201 -6.0165 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261019514.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:12 Heat of formation + Delta-G solvation = -2.001955 kcal Electronic energy + Delta-G solvation = -15569.079981 eV Core-core repulsion = 13170.628848 eV Total energy + Delta-G solvation = -2398.451133 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.56225 -37.25939 -35.54121 -33.65403 -31.87719 -30.59866 -27.62676 -27.09801 -24.70591 -23.26918 -22.80618 -20.58048 -18.72033 -18.54169 -16.94016 -16.50762 -16.01139 -15.98389 -15.70019 -14.87504 -14.56694 -14.26359 -14.18620 -13.92422 -13.82836 -13.70724 -13.14355 -12.88792 -12.66234 -12.39179 -12.28906 -12.10186 -11.95344 -11.72888 -11.27818 -11.20430 -10.92068 -10.74830 -10.28268 -9.65991 -8.31872 -8.26693 -6.33836 0.29249 0.43113 0.67930 1.32065 1.33314 1.37128 1.47956 2.32755 2.75769 3.06715 3.48520 3.70110 3.92060 3.98389 4.12054 4.30812 4.49063 4.51628 4.55811 4.67909 4.71684 4.75881 4.86590 4.87818 4.93072 4.99385 5.08008 5.19492 5.27731 5.34299 5.40656 5.51569 5.62398 5.94141 6.01586 6.31902 6.72431 7.30757 8.87495 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.041821 B = 0.005593 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.352776 B = 5004.847339 C = 5219.601783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.040 3.960 3 H 0.036 0.964 4 C -0.509 4.509 5 H 0.031 0.969 6 C 0.012 3.988 7 N -0.950 5.950 8 Si 0.951 3.049 9 H -0.266 1.266 10 H -0.300 1.300 11 H -0.244 1.244 12 C -0.048 4.048 13 C -0.106 4.106 14 C -0.096 4.096 15 C -0.110 4.110 16 C -0.105 4.105 17 C -0.113 4.113 18 C -0.082 4.082 19 C -0.039 4.039 20 H 0.145 0.855 21 C -0.137 4.137 22 S -0.188 6.188 23 H 0.035 0.965 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.266 0.734 27 H 0.120 0.880 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.128 3.728 -20.077 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.021 3.979 3 H 0.054 0.946 4 C -0.547 4.547 5 H 0.049 0.951 6 C -0.184 4.184 7 N -0.590 5.590 8 Si 0.778 3.222 9 H -0.192 1.192 10 H -0.228 1.228 11 H -0.168 1.168 12 C -0.050 4.050 13 C -0.126 4.126 14 C -0.119 4.119 15 C -0.222 4.222 16 C -0.111 4.111 17 C -0.133 4.133 18 C -0.120 4.120 19 C -0.167 4.167 20 H 0.163 0.837 21 C -0.195 4.195 22 S 0.053 5.947 23 H 0.053 0.947 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.138 0.862 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.390 2.551 -20.513 20.717 hybrid contribution -0.637 1.160 1.738 2.185 sum 0.753 3.711 -18.775 19.153 Atomic orbital electron populations 1.22084 0.96665 1.01380 0.99705 1.18253 0.93357 0.95634 0.90633 0.94554 1.21176 1.31004 1.12320 0.90221 0.95051 1.25872 0.97269 1.00032 0.95271 1.70045 1.47721 1.42596 0.98639 0.85812 0.79061 0.79962 0.77362 1.19221 1.22816 1.16757 1.19937 0.95765 0.94463 0.94790 1.20995 1.00548 0.94638 0.96376 1.20524 0.97555 1.00069 0.93732 1.22016 1.03346 0.97072 0.99728 1.21128 0.99174 0.93603 0.97169 1.20877 0.98447 1.00512 0.93418 1.21044 0.99919 1.00969 0.90040 1.24221 1.04548 0.90011 0.97912 0.83681 1.21976 0.96064 1.02575 0.98915 1.85880 1.74712 1.16562 1.17575 0.94686 0.92019 0.92812 0.92519 0.86162 0.84983 0.85198 0.87163 0.88221 0.88988 0.90628 0.93662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.79 8.48 71.98 0.61 -5.18 16 2 C 0.04 1.83 2.06 -12.29 -0.03 1.81 16 3 H 0.04 1.65 6.89 -2.38 -0.02 1.63 16 4 C -0.51 -28.83 8.82 25.60 0.23 -28.60 16 5 H 0.03 2.00 7.84 -2.91 -0.02 1.98 16 6 C 0.01 0.72 5.45 84.66 0.46 1.18 16 7 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 8 Si 0.95 44.26 24.37 68.60 1.67 45.93 16 9 H -0.27 -11.78 6.87 99.48 0.68 -11.10 16 10 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 11 H -0.24 -10.36 6.53 99.48 0.65 -9.71 16 12 C -0.05 -1.96 4.73 -19.97 -0.09 -2.06 16 13 C -0.11 -4.21 8.71 22.24 0.19 -4.01 16 14 C -0.10 -3.37 10.05 22.36 0.22 -3.15 16 15 C -0.11 -3.59 6.48 22.56 0.15 -3.45 16 16 C -0.11 -3.24 5.98 -19.33 -0.12 -3.36 16 17 C -0.11 -3.99 9.60 22.47 0.22 -3.78 16 18 C -0.08 -1.72 5.82 30.28 0.18 -1.54 16 19 C -0.04 -0.70 4.04 30.98 0.13 -0.57 16 20 H 0.15 1.81 8.14 -2.38 -0.02 1.79 16 21 C -0.14 -2.05 9.30 71.98 0.67 -1.38 16 22 S -0.19 -4.97 22.56 -56.49 -1.27 -6.25 16 23 H 0.03 1.46 3.27 -2.39 -0.01 1.46 16 24 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.05 2.17 7.38 -2.38 -0.02 2.16 16 26 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 27 H 0.12 4.94 7.58 -2.91 -0.02 4.91 16 28 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 29 H 0.13 4.12 7.90 -2.91 -0.02 4.10 16 30 H 0.11 1.82 7.91 -2.38 -0.02 1.81 16 31 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -66.60 284.90 4.51 -62.09 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.00 Total: 11.40 kcal Atomic # 6 Polarization: -56.89 SS G_CDS: 2.81 Total: -54.08 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.30 Total: -59.10 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.67 Total: 45.93 kcal Atomic # 16 Polarization: -4.97 SS G_CDS: -1.27 Total: -6.25 kcal Total: -66.60 4.51 -62.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261019514.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.088 kcal (2) G-P(sol) polarization free energy of solvation -66.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds