Wall clock time and date at job start Mon Mar 30 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46948 * 2 1 4 4 C 1.50711 * 109.46674 * 240.00690 * 2 1 3 5 5 H 1.08001 * 119.99514 * 245.45771 * 4 2 1 6 6 C 1.37875 * 119.99870 * 65.46355 * 4 2 1 7 7 N 1.31512 * 120.00281 * 9.59144 * 6 4 2 8 8 Si 1.86802 * 119.99434 * 189.59405 * 6 4 2 9 9 H 1.48501 * 109.46921 * 84.99854 * 8 6 4 10 10 H 1.48501 * 109.46875 * 204.99155 * 8 6 4 11 11 H 1.48497 * 109.47307 * 324.99268 * 8 6 4 12 12 C 1.50702 * 109.47508 * 120.00975 * 2 1 3 13 13 C 1.38319 * 119.72936 * 59.97180 * 12 2 1 14 14 C 1.38024 * 119.28692 * 179.76534 * 13 12 2 15 15 C 1.38815 * 120.16643 * 0.32544 * 14 13 12 16 16 C 1.38887 * 121.14820 * 359.84559 * 15 14 13 17 17 C 1.37699 * 119.72333 * 239.99899 * 12 2 1 18 18 C 1.50873 * 115.38286 * 179.84870 * 16 15 14 19 19 C 1.54132 * 110.53841 * 20.30412 * 18 16 15 20 20 H 1.09000 * 111.09767 * 213.87190 * 19 18 16 21 21 C 1.52992 * 111.09767 * 89.77924 * 19 18 16 22 22 S 1.77436 * 130.57659 * 180.15848 * 15 14 13 23 23 H 1.09000 * 109.47487 * 63.24827 * 1 2 3 24 24 H 1.09005 * 109.47114 * 183.24657 * 1 2 3 25 25 H 1.09006 * 109.46724 * 303.24411 * 1 2 3 26 26 H 0.96994 * 119.99807 * 179.97438 * 7 6 4 27 27 H 1.08000 * 120.35757 * 359.91526 * 13 12 2 28 28 H 1.08009 * 119.91489 * 179.97438 * 14 13 12 29 29 H 1.07998 * 119.47457 * 359.97438 * 17 12 2 30 30 H 1.08998 * 109.27025 * 140.59572 * 18 16 15 31 31 H 1.08998 * 109.26853 * 260.09258 * 18 16 15 32 32 H 1.08992 * 109.47494 * 60.00241 * 21 19 18 33 33 H 1.09009 * 109.47297 * 180.02562 * 21 19 18 34 34 H 1.09001 * 109.47277 * 299.99517 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2307 5 1 2.5785 -1.6370 -1.1341 6 6 1.7945 -0.1771 -2.4797 7 7 1.2999 1.0362 -2.5935 8 14 2.1748 -1.1781 -4.0103 9 1 1.0221 -2.0602 -4.3239 10 1 2.4218 -0.2616 -5.1524 11 1 3.3828 -2.0081 -3.7715 12 6 2.0324 -0.7106 1.2303 13 6 1.6944 -2.0348 1.4437 14 6 2.1636 -2.6781 2.5711 15 6 2.9603 -1.9978 3.4818 16 6 3.3043 -0.6671 3.2818 17 6 2.8238 -0.0361 2.1330 18 6 4.1716 -0.0551 4.3541 19 6 4.8903 -1.1542 5.1610 20 1 5.0087 -0.8611 6.2041 21 6 6.2408 -1.5043 4.5331 22 16 3.7061 -2.5436 4.9965 23 1 -0.3634 0.4626 -0.9176 24 1 -0.3633 -1.0261 0.0582 25 1 -0.3633 0.5634 0.8595 26 1 1.1330 1.4114 -3.4722 27 1 1.0721 -2.5604 0.7346 28 1 1.9056 -3.7119 2.7480 29 1 3.0770 0.9976 1.9492 30 1 4.9139 0.5938 3.8894 31 1 3.5492 0.5348 5.0269 32 1 6.8732 -0.6169 4.5130 33 1 6.7250 -2.2826 5.1231 34 1 6.0863 -1.8636 3.5157 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261019958.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:17 Heat of formation + Delta-G solvation = 3.892974 kcal Electronic energy + Delta-G solvation = -15526.691965 eV Core-core repulsion = 13128.496456 eV Total energy + Delta-G solvation = -2398.195510 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.07890 -35.78379 -33.91138 -31.46002 -30.58519 -28.58276 -26.47528 -25.13114 -23.10447 -21.88754 -21.46146 -19.06583 -17.27695 -16.24934 -15.20387 -14.97510 -14.87623 -14.60507 -14.04186 -13.28490 -13.18205 -12.77904 -12.56379 -12.48008 -12.11994 -11.70586 -11.47546 -11.35658 -11.19479 -10.95955 -10.85689 -10.65164 -10.41530 -10.16564 -9.89017 -9.39407 -9.23066 -8.70593 -8.39358 -8.22831 -7.00622 -6.07867 -4.10474 1.67183 1.85405 1.97318 2.50427 3.28465 3.35134 3.38230 4.24085 4.43610 4.54034 4.74559 4.87137 5.24882 5.26363 5.33405 5.57570 5.63410 5.72374 5.77584 5.87408 5.97968 6.08902 6.12324 6.39106 6.49920 6.73154 6.76504 6.86815 7.06282 7.08900 7.26405 7.54319 7.65876 7.89665 7.92942 8.32954 8.91989 9.52984 11.00611 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.034228 B = 0.005508 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.848647 B = 5082.087365 C = 5144.118937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.069 3.931 3 H 0.042 0.958 4 C -0.511 4.511 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.024 4.024 13 C -0.096 4.096 14 C -0.091 4.091 15 C -0.102 4.102 16 C -0.108 4.108 17 C -0.106 4.106 18 C -0.081 4.081 19 C -0.051 4.051 20 H 0.114 0.886 21 C -0.139 4.139 22 S -0.179 6.179 23 H 0.068 0.932 24 H 0.031 0.969 25 H 0.014 0.986 26 H 0.262 0.738 27 H 0.131 0.869 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 -2.923 12.892 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.060 0.940 4 C -0.549 4.549 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.025 4.025 13 C -0.116 4.116 14 C -0.114 4.114 15 C -0.213 4.213 16 C -0.113 4.113 17 C -0.126 4.126 18 C -0.118 4.118 19 C -0.180 4.180 20 H 0.132 0.868 21 C -0.198 4.198 22 S 0.061 5.939 23 H 0.087 0.913 24 H 0.050 0.950 25 H 0.033 0.967 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.978 -3.806 13.598 14.972 hybrid contribution 0.319 0.506 -1.737 1.837 sum 5.298 -3.299 11.861 13.403 Atomic orbital electron populations 1.21743 0.97905 0.98844 0.99939 1.17931 0.92456 0.96035 0.88509 0.93989 1.21072 1.35886 1.08071 0.89895 0.92371 1.24946 0.95172 0.94621 0.98957 1.69959 1.44848 1.13890 1.23858 0.86647 0.78823 0.80175 0.82654 1.20470 1.21292 1.19925 1.20517 0.92692 0.93865 0.95461 1.21054 0.99771 0.94867 0.95892 1.20368 0.98402 0.99032 0.93620 1.21629 1.05368 0.96369 0.97975 1.20666 1.00533 0.93366 0.96735 1.20790 0.99074 0.99919 0.92778 1.20920 0.97919 0.97514 0.95493 1.23954 0.96503 0.94554 1.02949 0.86823 1.21971 0.94270 1.01810 1.01740 1.85759 1.43815 1.36907 1.27390 0.91331 0.94977 0.96723 0.92870 0.85115 0.86589 0.86527 0.89563 0.89537 0.91535 0.91762 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.92 37.16 0.33 -2.59 16 2 C 0.07 1.68 2.33 -92.92 -0.22 1.47 16 3 H 0.04 1.11 7.78 -51.93 -0.40 0.70 16 4 C -0.51 -13.63 8.19 -34.44 -0.28 -13.92 16 5 H 0.06 1.56 7.54 -52.49 -0.40 1.16 16 6 C 0.07 1.76 5.17 -17.82 -0.09 1.67 16 7 N -0.89 -24.93 12.16 55.43 0.67 -24.26 16 8 Si 0.89 20.94 29.55 -169.99 -5.02 15.92 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C -0.02 -0.50 4.73 -104.79 -0.50 -1.00 16 13 C -0.10 -1.89 8.62 -39.63 -0.34 -2.23 16 14 C -0.09 -1.63 10.05 -39.45 -0.40 -2.03 16 15 C -0.10 -1.77 6.48 -39.13 -0.25 -2.03 16 16 C -0.11 -1.84 5.98 -103.79 -0.62 -2.46 16 17 C -0.11 -2.04 9.60 -39.27 -0.38 -2.41 16 18 C -0.08 -1.05 5.82 -27.21 -0.16 -1.21 16 19 C -0.05 -0.60 4.04 -26.14 -0.11 -0.70 16 20 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 21 C -0.14 -1.48 9.30 37.15 0.35 -1.13 16 22 S -0.18 -2.65 22.56 -107.50 -2.43 -5.07 16 23 H 0.07 1.73 6.84 -51.93 -0.36 1.37 16 24 H 0.03 0.69 7.27 -51.93 -0.38 0.31 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.13 2.53 7.55 -52.49 -0.40 2.13 16 28 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 29 H 0.12 2.13 7.90 -52.49 -0.41 1.71 16 30 H 0.09 1.01 7.91 -51.93 -0.41 0.60 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 292.85 15.07 4.41 4.41 Total: -1.00 -28.18 292.85 -9.87 -38.05 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.85 Total: -0.48 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -2.66 Total: -28.58 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.67 Total: -24.26 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -2.43 Total: -5.07 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.18 -9.87 -38.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261019958.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.947 kcal (2) G-P(sol) polarization free energy of solvation -28.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds