Wall clock time and date at job start Mon Mar 30 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46948 * 2 1 4 4 C 1.50711 * 109.46674 * 240.00690 * 2 1 3 5 5 H 1.08001 * 119.99514 * 245.45771 * 4 2 1 6 6 C 1.37875 * 119.99870 * 65.46355 * 4 2 1 7 7 N 1.31512 * 120.00281 * 9.59144 * 6 4 2 8 8 Si 1.86802 * 119.99434 * 189.59405 * 6 4 2 9 9 H 1.48501 * 109.46921 * 84.99854 * 8 6 4 10 10 H 1.48501 * 109.46875 * 204.99155 * 8 6 4 11 11 H 1.48497 * 109.47307 * 324.99268 * 8 6 4 12 12 C 1.50702 * 109.47508 * 120.00975 * 2 1 3 13 13 C 1.38319 * 119.72936 * 59.97180 * 12 2 1 14 14 C 1.38024 * 119.28692 * 179.76534 * 13 12 2 15 15 C 1.38815 * 120.16643 * 0.32544 * 14 13 12 16 16 C 1.38887 * 121.14820 * 359.84559 * 15 14 13 17 17 C 1.37699 * 119.72333 * 239.99899 * 12 2 1 18 18 C 1.50873 * 115.38286 * 179.84870 * 16 15 14 19 19 C 1.54132 * 110.53841 * 20.30412 * 18 16 15 20 20 H 1.09000 * 111.09767 * 213.87190 * 19 18 16 21 21 C 1.52992 * 111.09767 * 89.77924 * 19 18 16 22 22 S 1.77436 * 130.57659 * 180.15848 * 15 14 13 23 23 H 1.09000 * 109.47487 * 63.24827 * 1 2 3 24 24 H 1.09005 * 109.47114 * 183.24657 * 1 2 3 25 25 H 1.09006 * 109.46724 * 303.24411 * 1 2 3 26 26 H 0.96994 * 119.99807 * 179.97438 * 7 6 4 27 27 H 1.08000 * 120.35757 * 359.91526 * 13 12 2 28 28 H 1.08009 * 119.91489 * 179.97438 * 14 13 12 29 29 H 1.07998 * 119.47457 * 359.97438 * 17 12 2 30 30 H 1.08998 * 109.27025 * 140.59572 * 18 16 15 31 31 H 1.08998 * 109.26853 * 260.09258 * 18 16 15 32 32 H 1.08992 * 109.47494 * 60.00241 * 21 19 18 33 33 H 1.09009 * 109.47297 * 180.02562 * 21 19 18 34 34 H 1.09001 * 109.47277 * 299.99517 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2307 5 1 2.5785 -1.6370 -1.1341 6 6 1.7945 -0.1771 -2.4797 7 7 1.2999 1.0362 -2.5935 8 14 2.1748 -1.1781 -4.0103 9 1 1.0221 -2.0602 -4.3239 10 1 2.4218 -0.2616 -5.1524 11 1 3.3828 -2.0081 -3.7715 12 6 2.0324 -0.7106 1.2303 13 6 1.6944 -2.0348 1.4437 14 6 2.1636 -2.6781 2.5711 15 6 2.9603 -1.9978 3.4818 16 6 3.3043 -0.6671 3.2818 17 6 2.8238 -0.0361 2.1330 18 6 4.1716 -0.0551 4.3541 19 6 4.8903 -1.1542 5.1610 20 1 5.0087 -0.8611 6.2041 21 6 6.2408 -1.5043 4.5331 22 16 3.7061 -2.5436 4.9965 23 1 -0.3634 0.4626 -0.9176 24 1 -0.3633 -1.0261 0.0582 25 1 -0.3633 0.5634 0.8595 26 1 1.1330 1.4114 -3.4722 27 1 1.0721 -2.5604 0.7346 28 1 1.9056 -3.7119 2.7480 29 1 3.0770 0.9976 1.9492 30 1 4.9139 0.5938 3.8894 31 1 3.5492 0.5348 5.0269 32 1 6.8732 -0.6169 4.5130 33 1 6.7250 -2.2826 5.1231 34 1 6.0863 -1.8636 3.5157 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261019958.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:17 Heat of formation + Delta-G solvation = -8.810860 kcal Electronic energy + Delta-G solvation = -15527.242845 eV Core-core repulsion = 13128.496456 eV Total energy + Delta-G solvation = -2398.746389 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.50135 -37.15438 -35.52082 -33.27962 -31.85834 -30.18524 -27.60596 -27.17904 -24.59095 -23.22377 -22.80659 -20.63187 -18.58256 -18.22572 -16.78743 -16.44644 -15.99979 -15.94097 -15.61214 -14.68644 -14.47811 -14.27727 -13.95125 -13.71122 -13.65207 -13.47355 -12.92901 -12.77583 -12.68033 -12.40339 -12.31567 -12.25612 -12.13294 -11.85851 -11.28671 -11.12317 -10.90988 -10.47234 -10.23619 -9.63626 -8.31058 -8.11095 -6.23721 0.32758 0.45903 0.70481 1.33348 1.40822 1.42314 1.51120 2.41735 2.81923 3.15996 3.50589 3.71724 3.91330 4.00544 4.26066 4.34128 4.55301 4.58019 4.63710 4.71689 4.82365 4.86558 4.90816 4.95320 5.02388 5.16422 5.21749 5.26393 5.36774 5.46655 5.52513 5.66192 5.90494 6.01713 6.11135 6.33711 6.84582 7.42779 8.93182 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.034228 B = 0.005508 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.848647 B = 5082.087365 C = 5144.118937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.071 3.929 3 H 0.010 0.990 4 C -0.523 4.523 5 H 0.051 0.949 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 0.950 3.050 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.272 1.272 12 C -0.049 4.049 13 C -0.108 4.108 14 C -0.093 4.093 15 C -0.114 4.114 16 C -0.105 4.105 17 C -0.119 4.119 18 C -0.083 4.083 19 C -0.039 4.039 20 H 0.149 0.851 21 C -0.139 4.139 22 S -0.182 6.182 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.029 0.971 26 H 0.263 0.737 27 H 0.126 0.874 28 H 0.136 0.864 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.559 -3.625 14.742 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.053 3.947 3 H 0.028 0.972 4 C -0.561 4.561 5 H 0.070 0.930 6 C -0.181 4.181 7 N -0.556 5.556 8 Si 0.775 3.225 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.196 1.196 12 C -0.051 4.051 13 C -0.128 4.128 14 C -0.115 4.115 15 C -0.226 4.226 16 C -0.110 4.110 17 C -0.139 4.139 18 C -0.120 4.120 19 C -0.167 4.167 20 H 0.166 0.834 21 C -0.197 4.197 22 S 0.059 5.941 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.144 0.856 28 H 0.154 0.846 29 H 0.135 0.865 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.363 -4.518 15.460 17.318 hybrid contribution -0.042 0.732 -2.183 2.303 sum 6.321 -3.787 13.277 15.185 Atomic orbital electron populations 1.21591 0.97349 0.99299 0.99159 1.17762 0.92977 0.94373 0.89632 0.97167 1.21344 1.35666 1.07888 0.91196 0.93046 1.25677 0.95207 0.95474 1.01741 1.70069 1.45926 1.15177 1.24439 0.85697 0.78758 0.78802 0.79212 1.19743 1.20937 1.19631 1.20277 0.94857 0.94712 0.95250 1.21001 1.00498 0.94391 0.96864 1.20554 0.98045 0.99926 0.93023 1.22006 1.04709 0.96795 0.99040 1.21105 0.99947 0.93348 0.96586 1.20844 0.99318 1.00117 0.93609 1.21043 0.98092 0.98110 0.94784 1.24199 0.95677 0.92123 1.04731 0.83373 1.21984 0.94166 1.03276 1.00299 1.85771 1.44617 1.38691 1.25046 0.93944 0.94077 0.95207 0.92848 0.85616 0.84620 0.86478 0.87960 0.87746 0.89221 0.90406 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.92 71.98 0.64 -4.89 16 2 C 0.07 3.59 2.33 -12.28 -0.03 3.56 16 3 H 0.01 0.57 7.78 -2.39 -0.02 0.55 16 4 C -0.52 -28.68 8.19 25.60 0.21 -28.47 16 5 H 0.05 2.82 7.54 -2.91 -0.02 2.80 16 6 C 0.02 1.00 5.17 84.65 0.44 1.44 16 7 N -0.92 -52.89 12.16 21.45 0.26 -52.63 16 8 Si 0.95 43.47 29.55 68.60 2.03 45.50 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 C -0.05 -2.14 4.73 -19.97 -0.09 -2.24 16 13 C -0.11 -4.30 8.62 22.24 0.19 -4.11 16 14 C -0.09 -3.24 10.05 22.36 0.22 -3.02 16 15 C -0.11 -3.80 6.48 22.56 0.15 -3.65 16 16 C -0.10 -3.41 5.98 -19.32 -0.12 -3.53 16 17 C -0.12 -4.61 9.60 22.47 0.22 -4.39 16 18 C -0.08 -1.88 5.82 30.29 0.18 -1.70 16 19 C -0.04 -0.76 4.04 30.97 0.13 -0.63 16 20 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 21 C -0.14 -2.44 9.30 71.98 0.67 -1.78 16 22 S -0.18 -4.87 22.56 -56.49 -1.27 -6.14 16 23 H 0.04 2.20 6.84 -2.39 -0.02 2.19 16 24 H 0.04 1.82 7.27 -2.38 -0.02 1.80 16 25 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 27 H 0.13 4.98 7.55 -2.91 -0.02 4.96 16 28 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 29 H 0.12 4.37 7.90 -2.91 -0.02 4.34 16 30 H 0.10 2.05 7.91 -2.39 -0.02 2.03 16 31 H 0.10 2.06 8.14 -2.39 -0.02 2.05 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -61.62 292.85 4.89 -56.73 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.07 Total: 9.95 kcal Atomic # 6 Polarization: -56.21 SS G_CDS: 2.80 Total: -53.41 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.26 Total: -52.63 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -4.87 SS G_CDS: -1.27 Total: -6.14 kcal Total: -61.62 4.89 -56.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261019958.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.920 kcal (2) G-P(sol) polarization free energy of solvation -61.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds