Wall clock time and date at job start Mon Mar 30 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48498 * 109.47294 * 89.99882 * 3 2 1 5 5 H 1.48507 * 109.47362 * 209.99991 * 3 2 1 6 6 H 1.48501 * 109.47336 * 330.00140 * 3 2 1 7 7 C 1.37878 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99772 * 177.27411 * 7 2 1 9 9 C 1.50697 * 119.99904 * 357.26888 * 7 2 1 10 10 H 1.08996 * 109.47435 * 326.12697 * 9 7 2 11 11 C 1.52995 * 109.47294 * 206.12500 * 9 7 2 12 12 N 1.46906 * 109.46859 * 65.24870 * 11 9 7 13 13 C 1.50701 * 109.46639 * 86.12751 * 9 7 2 14 14 C 1.34246 * 126.49668 * 59.69345 * 13 9 7 15 15 N 1.36806 * 109.93236 * 179.88641 * 14 13 9 16 16 H 0.97005 * 125.07173 * 180.15298 * 15 14 13 17 17 C 1.37823 * 109.86468 * 0.38245 * 15 14 13 18 18 C 1.39088 * 133.39785 * 179.71797 * 17 15 14 19 19 C 1.37719 * 119.95117 * 179.97438 * 18 17 15 20 20 C 1.39032 * 120.64751 * 0.04156 * 19 18 17 21 21 F 1.35108 * 119.83362 * 179.97438 * 20 19 18 22 22 C 1.37784 * 120.33364 * 0.02562 * 20 19 18 23 23 C 1.39675 * 119.62989 * 359.97162 * 22 20 19 24 24 H 0.97002 * 119.99901 * 174.49782 * 1 2 3 25 25 H 1.09002 * 109.47791 * 185.24959 * 11 9 7 26 26 H 1.09006 * 109.47501 * 305.25595 * 11 9 7 27 27 H 1.00899 * 110.99772 * 62.81530 * 12 11 9 28 28 H 1.00900 * 110.99711 * 186.76386 * 12 11 9 29 29 H 1.07995 * 125.03179 * 359.97438 * 14 13 9 30 30 H 1.07999 * 120.02784 * 359.97438 * 18 17 15 31 31 H 1.08004 * 119.67375 * 180.02562 * 19 18 17 32 32 H 1.08006 * 120.18828 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4403 -0.7001 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0836 -1.1945 -0.0450 9 6 1.2523 -2.4984 0.0611 10 1 0.3561 -2.3727 0.6685 11 6 2.1448 -3.5729 0.6852 12 7 2.4243 -3.2249 2.0848 13 6 0.8600 -2.9182 -1.3321 14 6 1.6924 -3.1609 -2.3571 15 7 0.9753 -3.5213 -3.4650 16 1 1.3578 -3.7470 -4.3274 17 6 -0.3719 -3.5110 -3.1746 18 6 -1.5126 -3.7850 -3.9218 19 6 -2.7565 -3.6864 -3.3389 20 6 -2.8869 -3.3137 -2.0058 21 9 -4.1153 -3.2217 -1.4507 22 6 -1.7699 -3.0366 -1.2482 23 6 -0.5021 -3.1326 -1.8265 24 1 -0.4850 -0.8362 -0.0805 25 1 1.6363 -4.5362 0.6449 26 1 3.0820 -3.6333 0.1318 27 1 1.5752 -3.2076 2.6296 28 1 3.0991 -3.8581 2.4870 29 1 2.7688 -3.0843 -2.3130 30 1 -1.4231 -4.0748 -4.9583 31 1 -3.6392 -3.9006 -3.9231 32 1 -1.8740 -2.7469 -0.2130 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261023256.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:32 Heat of formation + Delta-G solvation = 4.047139 kcal Electronic energy + Delta-G solvation = -17766.838571 eV Core-core repulsion = 14834.729322 eV Total energy + Delta-G solvation = -2932.109249 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.28575 -40.64835 -36.23608 -35.30275 -32.43883 -31.35803 -29.29263 -28.39603 -26.49251 -23.75162 -22.56550 -21.66250 -21.14355 -18.70142 -17.58940 -16.70967 -16.59849 -15.66777 -15.04589 -14.72258 -14.69902 -13.94678 -13.76413 -13.65305 -13.48380 -13.20491 -12.59612 -12.29212 -11.93554 -11.47065 -11.34871 -11.22363 -10.77923 -10.66458 -10.33777 -10.04497 -9.64889 -9.15591 -8.49549 -8.25515 -7.76923 -7.60443 -6.89123 -6.16771 -3.86511 1.49857 1.89742 3.43058 3.52519 3.56301 3.65533 3.70637 4.25798 4.66170 4.79153 5.07783 5.25149 5.39109 5.55233 5.62090 5.68826 5.94110 6.09687 6.13017 6.23641 6.31780 6.48050 6.61763 6.68183 6.77148 6.93440 7.23403 7.39543 7.55665 7.73708 7.97150 8.10392 8.20287 8.36366 8.61655 9.04349 9.82192 11.22151 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.019402 B = 0.008085 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.824999 B = 3462.438028 C = 3723.930378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.020 3.980 3 Si 1.067 2.933 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.557 4.557 8 H 0.049 0.951 9 C 0.091 3.909 10 H 0.037 0.963 11 C 0.087 3.913 12 N -0.832 5.832 13 C -0.104 4.104 14 C 0.029 3.971 15 N -0.601 5.601 16 H 0.408 0.592 17 C 0.083 3.917 18 C -0.112 4.112 19 C -0.139 4.139 20 C 0.050 3.950 21 F -0.150 7.150 22 C -0.085 4.085 23 C -0.077 4.077 24 H 0.272 0.728 25 H -0.004 1.004 26 H 0.055 0.945 27 H 0.333 0.667 28 H 0.321 0.679 29 H 0.164 0.836 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 -9.174 -5.883 10.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.184 4.184 3 Si 0.896 3.104 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.596 4.596 8 H 0.067 0.933 9 C 0.071 3.929 10 H 0.055 0.945 11 C -0.044 4.044 12 N -0.359 5.359 13 C -0.111 4.111 14 C -0.093 4.093 15 N -0.204 5.204 16 H 0.243 0.757 17 C -0.025 4.025 18 C -0.133 4.133 19 C -0.159 4.159 20 C 0.029 3.971 21 F -0.129 7.129 22 C -0.105 4.105 23 C -0.083 4.083 24 H 0.084 0.916 25 H 0.014 0.986 26 H 0.074 0.926 27 H 0.144 0.856 28 H 0.132 0.868 29 H 0.181 0.819 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.082 -6.841 -6.172 9.214 hybrid contribution -0.201 -2.524 -0.320 2.552 sum -0.119 -9.365 -6.492 11.396 Atomic orbital electron populations 1.70714 1.06846 1.31217 1.46319 1.25655 0.96550 1.02266 0.93971 0.83582 0.74519 0.75649 0.76602 1.21585 1.21804 1.21577 1.21653 0.93653 0.90299 1.53954 0.93258 1.17436 0.95376 0.93823 0.86268 0.94460 1.21748 0.98835 0.94753 0.89053 1.58464 1.16051 1.58044 1.03325 1.21383 0.88533 1.02018 0.99170 1.21449 0.97228 1.05323 0.85349 1.41664 1.03960 1.62113 1.12700 0.75691 1.18251 0.84725 1.04176 0.95352 1.19644 0.89422 1.05385 0.98864 1.20544 0.97460 1.04345 0.93548 1.17221 0.79556 1.07870 0.92406 1.91430 1.41021 1.94663 1.85822 1.20469 0.89985 0.99559 1.00437 1.19073 0.93524 1.02985 0.92700 0.91599 0.98593 0.92642 0.85562 0.86828 0.81896 0.86120 0.85340 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.50 13.58 55.43 0.75 -26.74 16 2 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 3 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.56 -14.95 7.88 -34.44 -0.27 -15.22 16 8 H 0.05 1.34 7.81 -52.48 -0.41 0.93 16 9 C 0.09 2.15 2.00 -92.93 -0.19 1.97 16 10 H 0.04 0.98 6.92 -51.93 -0.36 0.62 16 11 C 0.09 1.75 5.99 -3.82 -0.02 1.73 16 12 N -0.83 -15.69 9.31 -10.36 -0.10 -15.79 16 13 C -0.10 -2.28 4.85 -102.71 -0.50 -2.78 16 14 C 0.03 0.55 11.35 -16.74 -0.19 0.36 16 15 N -0.60 -9.70 6.07 -10.64 -0.06 -9.76 16 16 H 0.41 4.87 8.96 -40.82 -0.37 4.50 16 17 C 0.08 1.51 7.27 -83.96 -0.61 0.90 16 18 C -0.11 -1.74 10.06 -39.46 -0.40 -2.14 16 19 C -0.14 -2.22 9.99 -39.48 -0.39 -2.62 16 20 C 0.05 0.93 7.29 -39.45 -0.29 0.65 16 21 F -0.15 -2.78 17.26 2.25 0.04 -2.74 16 22 C -0.09 -1.77 9.66 -39.21 -0.38 -2.15 16 23 C -0.08 -1.64 6.28 -105.14 -0.66 -2.30 16 24 H 0.27 8.05 6.07 -40.82 -0.25 7.80 16 25 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.33 6.05 9.06 -39.29 -0.36 5.69 16 28 H 0.32 4.96 9.08 -39.29 -0.36 4.60 16 29 H 0.16 2.76 8.06 -52.49 -0.42 2.33 16 30 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 32 H 0.13 2.79 7.95 -52.48 -0.42 2.37 16 LS Contribution 281.84 15.07 4.25 4.25 Total: -1.00 -31.73 281.84 -7.62 -39.35 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -3.42 Total: 11.95 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -3.99 Total: -21.13 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.59 Total: -52.30 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.74 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.73 -7.62 -39.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023256.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.400 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds