Wall clock time and date at job start Mon Mar 30 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48498 * 109.47294 * 89.99882 * 3 2 1 5 5 H 1.48507 * 109.47362 * 209.99991 * 3 2 1 6 6 H 1.48501 * 109.47336 * 330.00140 * 3 2 1 7 7 C 1.37878 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99772 * 177.27411 * 7 2 1 9 9 C 1.50697 * 119.99904 * 357.26888 * 7 2 1 10 10 H 1.08996 * 109.47435 * 326.12697 * 9 7 2 11 11 C 1.52995 * 109.47294 * 206.12500 * 9 7 2 12 12 N 1.46906 * 109.46859 * 65.24870 * 11 9 7 13 13 C 1.50701 * 109.46639 * 86.12751 * 9 7 2 14 14 C 1.34246 * 126.49668 * 59.69345 * 13 9 7 15 15 N 1.36806 * 109.93236 * 179.88641 * 14 13 9 16 16 H 0.97005 * 125.07173 * 180.15298 * 15 14 13 17 17 C 1.37823 * 109.86468 * 0.38245 * 15 14 13 18 18 C 1.39088 * 133.39785 * 179.71797 * 17 15 14 19 19 C 1.37719 * 119.95117 * 179.97438 * 18 17 15 20 20 C 1.39032 * 120.64751 * 0.04156 * 19 18 17 21 21 F 1.35108 * 119.83362 * 179.97438 * 20 19 18 22 22 C 1.37784 * 120.33364 * 0.02562 * 20 19 18 23 23 C 1.39675 * 119.62989 * 359.97162 * 22 20 19 24 24 H 0.97002 * 119.99901 * 174.49782 * 1 2 3 25 25 H 1.09002 * 109.47791 * 185.24959 * 11 9 7 26 26 H 1.09006 * 109.47501 * 305.25595 * 11 9 7 27 27 H 1.00899 * 110.99772 * 62.81530 * 12 11 9 28 28 H 1.00900 * 110.99711 * 186.76386 * 12 11 9 29 29 H 1.07995 * 125.03179 * 359.97438 * 14 13 9 30 30 H 1.07999 * 120.02784 * 359.97438 * 18 17 15 31 31 H 1.08004 * 119.67375 * 180.02562 * 19 18 17 32 32 H 1.08006 * 120.18828 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4403 -0.7001 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0836 -1.1945 -0.0450 9 6 1.2523 -2.4984 0.0611 10 1 0.3561 -2.3727 0.6685 11 6 2.1448 -3.5729 0.6852 12 7 2.4243 -3.2249 2.0848 13 6 0.8600 -2.9182 -1.3321 14 6 1.6924 -3.1609 -2.3571 15 7 0.9753 -3.5213 -3.4650 16 1 1.3578 -3.7470 -4.3274 17 6 -0.3719 -3.5110 -3.1746 18 6 -1.5126 -3.7850 -3.9218 19 6 -2.7565 -3.6864 -3.3389 20 6 -2.8869 -3.3137 -2.0058 21 9 -4.1153 -3.2217 -1.4507 22 6 -1.7699 -3.0366 -1.2482 23 6 -0.5021 -3.1326 -1.8265 24 1 -0.4850 -0.8362 -0.0805 25 1 1.6363 -4.5362 0.6449 26 1 3.0820 -3.6333 0.1318 27 1 1.5752 -3.2076 2.6296 28 1 3.0991 -3.8581 2.4870 29 1 2.7688 -3.0843 -2.3130 30 1 -1.4231 -4.0748 -4.9583 31 1 -3.6392 -3.9006 -3.9231 32 1 -1.8740 -2.7469 -0.2130 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261023256.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:32 Heat of formation + Delta-G solvation = -17.515415 kcal Electronic energy + Delta-G solvation = -17767.773594 eV Core-core repulsion = 14834.729322 eV Total energy + Delta-G solvation = -2933.044272 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.76014 -42.07735 -37.71116 -36.95020 -34.28431 -32.92496 -30.87117 -29.80672 -28.14458 -25.74850 -23.96392 -23.23595 -22.64607 -20.34887 -19.07531 -18.43085 -18.16935 -17.09985 -16.51473 -16.31336 -16.14378 -15.65152 -15.58878 -15.26285 -14.97296 -14.69101 -13.99302 -13.68956 -13.51625 -13.29721 -13.06896 -13.00013 -12.47954 -12.17015 -11.92883 -11.84779 -11.46112 -10.78826 -10.38577 -10.29774 -9.32402 -9.02364 -8.44452 -8.29656 -6.03929 0.09496 0.47985 1.56273 1.64534 1.80569 1.95442 2.33436 2.68613 2.81185 3.38589 3.41843 3.75001 3.90185 4.02369 4.18741 4.37879 4.43739 4.55301 4.62121 4.72211 4.92836 5.01623 5.08891 5.22133 5.28003 5.36320 5.55752 5.87022 5.96409 6.15846 6.31794 6.45999 6.50225 6.80294 6.87238 6.91637 7.72536 9.04929 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.019402 B = 0.008085 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.824999 B = 3462.438028 C = 3723.930378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.035 4.035 3 Si 1.107 2.893 4 H -0.283 1.283 5 H -0.269 1.269 6 H -0.297 1.297 7 C -0.549 4.549 8 H 0.044 0.956 9 C 0.093 3.907 10 H -0.004 1.004 11 C 0.096 3.904 12 N -0.844 5.844 13 C -0.153 4.153 14 C 0.049 3.951 15 N -0.578 5.578 16 H 0.432 0.568 17 C 0.076 3.924 18 C -0.091 4.091 19 C -0.134 4.134 20 C 0.044 3.956 21 F -0.154 7.154 22 C -0.121 4.121 23 C -0.111 4.111 24 H 0.263 0.737 25 H 0.006 0.994 26 H 0.064 0.936 27 H 0.334 0.666 28 H 0.342 0.658 29 H 0.184 0.816 30 H 0.172 0.828 31 H 0.168 0.832 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.953 -10.260 -8.538 13.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.232 4.232 3 Si 0.932 3.068 4 H -0.209 1.209 5 H -0.194 1.194 6 H -0.223 1.223 7 C -0.588 4.588 8 H 0.063 0.937 9 C 0.074 3.926 10 H 0.014 0.986 11 C -0.035 4.035 12 N -0.373 5.373 13 C -0.160 4.160 14 C -0.076 4.076 15 N -0.184 5.184 16 H 0.272 0.728 17 C -0.033 4.033 18 C -0.111 4.111 19 C -0.154 4.154 20 C 0.024 3.976 21 F -0.133 7.133 22 C -0.141 4.141 23 C -0.116 4.116 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.082 0.918 27 H 0.145 0.855 28 H 0.155 0.845 29 H 0.201 0.799 30 H 0.189 0.811 31 H 0.186 0.814 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.126 -7.967 -8.851 11.962 hybrid contribution -0.528 -2.284 0.502 2.398 sum 0.599 -10.252 -8.349 13.235 Atomic orbital electron populations 1.70791 1.07964 1.30852 1.49538 1.26836 0.96612 1.05686 0.94063 0.83061 0.74307 0.72447 0.77012 1.20908 1.19428 1.22322 1.21917 0.93387 0.91651 1.51817 0.93740 1.17276 0.93850 0.93922 0.87592 0.98615 1.21586 0.98434 0.93984 0.89525 1.58412 1.16768 1.59060 1.03067 1.21167 0.90069 1.05799 0.98966 1.21643 0.97855 1.02890 0.85203 1.41530 1.03077 1.60693 1.13068 0.72790 1.18525 0.86195 1.04226 0.94322 1.20182 0.87834 1.02453 1.00643 1.20981 0.99372 1.02875 0.92124 1.17502 0.78727 1.07764 0.93642 1.91414 1.41033 1.94684 1.86169 1.20397 0.91470 1.02454 0.99768 1.19261 0.93167 1.04494 0.94699 0.92613 0.97608 0.91757 0.85451 0.84487 0.79855 0.81102 0.81410 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.82 13.58 21.45 0.29 -59.53 16 2 C -0.03 -1.99 5.46 84.66 0.46 -1.53 16 3 Si 1.11 52.27 29.90 68.60 2.05 54.32 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 7 C -0.55 -29.90 7.88 25.60 0.20 -29.70 16 8 H 0.04 2.41 7.81 -2.91 -0.02 2.39 16 9 C 0.09 4.58 2.00 -12.29 -0.02 4.56 16 10 H 0.00 -0.25 6.92 -2.39 -0.02 -0.26 16 11 C 0.10 3.86 5.99 86.30 0.52 4.37 16 12 N -0.84 -31.87 9.31 -186.70 -1.74 -33.61 16 13 C -0.15 -6.79 4.85 -18.62 -0.09 -6.88 16 14 C 0.05 1.77 11.35 83.01 0.94 2.71 16 15 N -0.58 -16.85 6.07 -187.59 -1.14 -17.99 16 16 H 0.43 8.36 8.96 -92.70 -0.83 7.53 16 17 C 0.08 2.59 7.27 38.99 0.28 2.87 16 18 C -0.09 -2.44 10.06 22.35 0.22 -2.21 16 19 C -0.13 -3.86 9.99 22.34 0.22 -3.64 16 20 C 0.04 1.65 7.29 22.35 0.16 1.81 16 21 F -0.15 -5.77 17.26 44.97 0.78 -5.00 16 22 C -0.12 -5.32 9.66 22.51 0.22 -5.10 16 23 C -0.11 -4.78 6.28 -20.20 -0.13 -4.90 16 24 H 0.26 16.61 6.07 -92.71 -0.56 16.05 16 25 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 27 H 0.33 12.49 9.06 -89.69 -0.81 11.67 16 28 H 0.34 10.26 9.08 -89.69 -0.81 9.44 16 29 H 0.18 5.71 8.06 -2.91 -0.02 5.69 16 30 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 31 H 0.17 3.52 8.06 -2.91 -0.02 3.49 16 32 H 0.10 4.82 7.95 -2.91 -0.02 4.80 16 Total: -1.00 -71.93 281.84 2.16 -69.76 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -1.07 Total: 29.70 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 2.99 Total: -37.65 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -2.59 Total: -111.13 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.78 Total: -5.00 kcal Atomic # 14 Polarization: 52.27 SS G_CDS: 2.05 Total: 54.32 kcal Total: -71.93 2.16 -69.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023256.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.249 kcal (2) G-P(sol) polarization free energy of solvation -71.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds