Wall clock time and date at job start Mon Mar 30 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34248 * 125.03018 * 2 1 4 4 C 1.46481 * 107.00806 * 179.97438 * 3 2 1 5 5 C 1.39670 * 133.97524 * 179.97438 * 4 3 2 6 6 C 1.37793 * 119.63005 * 180.02562 * 5 4 3 7 7 F 1.35107 * 119.83397 * 179.97438 * 6 5 4 8 8 C 1.39035 * 120.33287 * 359.97438 * 6 5 4 9 9 C 1.50708 * 119.67283 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46871 * 325.01737 * 9 8 6 11 11 N 1.46904 * 109.46770 * 205.01775 * 9 8 6 12 12 C 1.50703 * 109.47199 * 85.02319 * 9 8 6 13 13 H 1.08003 * 119.99763 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99941 * 180.02562 * 12 9 8 15 15 N 1.31512 * 119.99800 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 120.00011 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.47386 * 89.99424 * 16 14 12 18 18 H 1.48499 * 109.47251 * 209.99738 * 16 14 12 19 19 H 1.48503 * 109.46838 * 329.99297 * 16 14 12 20 20 C 1.37705 * 120.65063 * 359.97438 * 8 6 5 21 21 C 1.39095 * 119.95311 * 359.97438 * 20 8 6 22 22 N 1.36811 * 125.03514 * 180.22630 * 2 1 3 23 23 H 0.96993 * 125.07148 * 0.07821 * 22 2 1 24 24 H 1.09007 * 109.47364 * 90.02708 * 1 2 3 25 25 H 1.09001 * 109.47175 * 210.01909 * 1 2 3 26 26 H 1.09004 * 109.47445 * 330.02544 * 1 2 3 27 27 H 1.07998 * 126.49250 * 359.94569 * 3 2 1 28 28 H 1.08000 * 120.18398 * 0.02562 * 5 4 3 29 29 H 1.00895 * 110.99827 * 176.04600 * 11 9 8 30 30 H 1.00899 * 111.00074 * 299.99982 * 11 9 8 31 31 H 0.97001 * 119.99787 * 180.02562 * 15 14 12 32 32 H 1.08004 * 120.02958 * 180.02562 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0993 0.0000 4 6 3.6705 0.6461 0.0006 5 6 4.9037 1.3019 0.0005 6 6 6.0675 0.5642 0.0007 7 9 7.2627 1.1943 0.0000 8 6 6.0182 -0.8253 0.0016 9 6 7.3003 -1.6174 0.0013 10 1 8.0515 -1.0923 -0.5888 11 7 7.0568 -2.9428 -0.5834 12 6 7.7934 -1.7756 1.4165 13 1 7.2345 -1.3453 2.2344 14 6 8.9586 -2.4689 1.6671 15 7 9.6393 -2.9924 0.6711 16 14 9.5702 -2.6644 3.4213 17 1 8.9996 -3.9029 4.0093 18 1 11.0525 -2.7536 3.4216 19 1 9.1447 -1.4920 4.2274 20 6 4.8093 -1.4848 0.0029 21 6 3.6225 -0.7595 0.0037 22 7 2.2924 -1.1202 -0.0044 23 1 1.9623 -2.0322 -0.0091 24 1 -0.3634 -0.0005 -1.0277 25 1 -0.3633 -0.8898 0.5141 26 1 -0.3634 0.8902 0.5134 27 1 1.9353 2.1236 -0.0008 28 1 4.9448 2.3811 0.0002 29 1 7.9143 -3.4699 -0.6542 30 1 6.3634 -3.4498 -0.0540 31 1 10.4589 -3.4804 0.8475 32 1 4.7827 -2.5645 0.0040 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261023292.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:27 Heat of formation + Delta-G solvation = -17.969424 kcal Electronic energy + Delta-G solvation = -17496.135011 eV Core-core repulsion = 14563.071052 eV Total energy + Delta-G solvation = -2933.063959 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.61296 -42.12278 -38.51813 -36.07637 -33.61847 -32.76142 -31.23804 -29.80799 -28.61457 -27.13606 -24.10837 -23.28657 -21.65722 -20.93883 -18.69006 -18.64313 -18.13830 -16.95767 -16.68105 -16.40148 -16.04456 -15.50000 -15.25578 -14.77442 -14.61388 -14.32089 -14.07947 -13.60855 -13.60023 -13.39683 -13.22557 -12.87708 -12.79763 -12.73090 -12.13136 -12.02867 -11.68342 -11.43638 -10.78086 -10.51005 -9.30568 -8.87087 -8.54409 -8.12834 -6.40957 0.14504 0.54764 1.34623 1.36990 1.47710 1.80146 2.21629 2.34911 2.85632 3.01916 3.46745 3.81273 3.99246 4.06962 4.29319 4.44380 4.53562 4.54863 4.69607 4.86811 4.95301 5.06201 5.13886 5.19592 5.28285 5.34784 5.60411 5.76208 5.79195 5.89144 6.00358 6.24387 6.59626 6.75716 6.85105 7.07286 7.34541 8.80126 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.031090 B = 0.006080 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.408265 B = 4604.123011 C = 4838.563798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.092 3.908 3 C -0.226 4.226 4 C -0.112 4.112 5 C -0.117 4.117 6 C 0.047 3.953 7 F -0.156 7.156 8 C -0.077 4.077 9 C 0.251 3.749 10 H 0.008 0.992 11 N -0.837 5.837 12 C -0.557 4.557 13 H 0.042 0.958 14 C 0.023 3.977 15 N -0.915 5.915 16 Si 0.962 3.038 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.277 1.277 20 C -0.096 4.096 21 C 0.078 3.922 22 N -0.584 5.584 23 H 0.426 0.574 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.167 0.833 28 H 0.149 0.851 29 H 0.347 0.653 30 H 0.320 0.680 31 H 0.269 0.731 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.524 3.930 -0.580 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.016 4.016 3 C -0.250 4.250 4 C -0.117 4.117 5 C -0.136 4.136 6 C 0.026 3.974 7 F -0.135 7.135 8 C -0.079 4.079 9 C 0.140 3.860 10 H 0.026 0.974 11 N -0.367 5.367 12 C -0.597 4.597 13 H 0.061 0.939 14 C -0.177 4.177 15 N -0.554 5.554 16 Si 0.787 3.213 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.202 1.202 20 C -0.117 4.117 21 C -0.029 4.029 22 N -0.189 5.189 23 H 0.266 0.734 24 H 0.110 0.890 25 H 0.102 0.898 26 H 0.119 0.881 27 H 0.185 0.815 28 H 0.166 0.834 29 H 0.162 0.838 30 H 0.131 0.869 31 H 0.078 0.922 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.630 4.134 -1.297 19.127 hybrid contribution 1.710 -0.786 1.685 2.526 sum -16.919 3.348 0.388 17.252 Atomic orbital electron populations 1.20616 0.84169 1.05193 1.04491 1.20995 0.95211 0.84816 1.00614 1.21653 0.88356 0.99458 1.15524 1.19187 0.94039 0.92252 1.06255 1.20435 0.89133 1.00418 1.03642 1.17565 0.80720 0.90486 1.08584 1.91392 1.45236 1.82345 1.94550 1.19987 0.96768 0.92088 0.99078 1.17577 0.88105 0.87968 0.92337 0.97373 1.59506 1.15639 1.06002 1.55528 1.21917 1.08913 1.35281 0.93585 0.93920 1.25748 0.95858 0.94759 1.01377 1.69839 1.16984 1.36205 1.32370 0.85508 0.77515 0.78504 0.79802 1.19381 1.20395 1.20208 1.19594 0.87992 0.99722 1.04405 1.18229 0.85454 0.94131 1.05120 1.41748 1.02635 1.09335 1.65181 0.73430 0.88962 0.89840 0.88141 0.81549 0.83360 0.83833 0.86930 0.92154 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 10.39 71.24 0.74 -0.15 16 2 C 0.09 1.91 7.08 40.87 0.29 2.20 16 3 C -0.23 -5.69 10.95 23.51 0.26 -5.43 16 4 C -0.11 -3.84 6.37 -20.20 -0.13 -3.97 16 5 C -0.12 -4.40 10.07 22.51 0.23 -4.17 16 6 C 0.05 2.14 7.23 22.36 0.16 2.31 16 7 F -0.16 -7.70 16.53 44.97 0.74 -6.95 16 8 C -0.08 -3.64 5.00 -19.80 -0.10 -3.74 16 9 C 0.25 13.58 2.71 43.43 0.12 13.70 16 10 H 0.01 0.52 7.77 -2.39 -0.02 0.50 16 11 N -0.84 -41.47 8.78 -174.93 -1.54 -43.01 16 12 C -0.56 -31.93 8.71 25.60 0.22 -31.71 16 13 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 14 C 0.02 1.28 5.38 84.65 0.46 1.73 16 15 N -0.91 -52.23 11.54 21.45 0.25 -51.98 16 16 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 C -0.10 -3.87 9.27 22.35 0.21 -3.66 16 21 C 0.08 2.66 7.27 38.99 0.28 2.95 16 22 N -0.58 -14.15 6.08 -175.87 -1.07 -15.22 16 23 H 0.43 7.60 8.96 -92.71 -0.83 6.77 16 24 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 26 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 28 H 0.15 4.69 8.06 -2.91 -0.02 4.67 16 29 H 0.35 18.37 7.08 -89.70 -0.63 17.73 16 30 H 0.32 14.56 7.17 -89.69 -0.64 13.92 16 31 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.13 5.01 6.24 -2.91 -0.02 4.99 16 Total: -1.00 -67.98 278.03 2.22 -65.76 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: -0.92 Total: 34.99 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 2.73 Total: -29.94 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -2.36 Total: -110.21 kcal Atomic # 9 Polarization: -7.70 SS G_CDS: 0.74 Total: -6.95 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -67.98 2.22 -65.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023292.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.786 kcal (2) G-P(sol) polarization free energy of solvation -67.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds