Wall clock time and date at job start Mon Mar 30 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34245 * 125.03378 * 2 1 4 4 C 1.46489 * 107.00589 * 180.02562 * 3 2 1 5 5 C 1.39673 * 133.96416 * 180.02562 * 4 3 2 6 6 C 1.37786 * 119.62672 * 179.97438 * 5 4 3 7 7 F 1.35099 * 119.83573 * 179.97438 * 6 5 4 8 8 C 1.39040 * 120.33252 * 0.02562 * 6 5 4 9 9 C 1.50696 * 119.67492 * 179.97438 * 8 6 5 10 10 H 1.09006 * 109.47511 * 39.99872 * 9 8 6 11 11 N 1.46894 * 109.47259 * 160.00213 * 9 8 6 12 12 C 1.50706 * 109.47259 * 279.99866 * 9 8 6 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 C 1.37715 * 120.64759 * 0.25424 * 8 6 5 21 21 C 1.39101 * 119.95216 * 359.49199 * 20 8 6 22 22 N 1.36808 * 125.03540 * 180.02562 * 2 1 3 23 23 H 0.96997 * 125.06854 * 0.02562 * 22 2 1 24 24 H 1.08994 * 109.47172 * 90.02000 * 1 2 3 25 25 H 1.08998 * 109.46765 * 210.02236 * 1 2 3 26 26 H 1.08998 * 109.46888 * 330.01260 * 1 2 3 27 27 H 1.08007 * 126.49382 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.18973 * 359.94331 * 5 4 3 29 29 H 1.00907 * 110.99654 * 296.04440 * 11 9 8 30 30 H 1.00901 * 111.00146 * 59.99612 * 11 9 8 31 31 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 32 32 H 1.07995 * 120.01770 * 179.74318 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2777 1.0992 0.0000 4 6 3.6707 0.6459 -0.0006 5 6 4.9038 1.3018 -0.0005 6 6 6.0676 0.5642 -0.0007 7 9 7.2627 1.1942 -0.0011 8 6 6.0183 -0.8254 -0.0016 9 6 7.3003 -1.6174 -0.0025 10 1 8.0234 -1.1391 0.6583 11 7 7.0330 -2.9823 0.4703 12 6 7.8571 -1.6706 -1.4019 13 1 7.3349 -1.1796 -2.2098 14 6 9.0329 -2.3461 -1.6508 15 7 9.6685 -2.9445 -0.6671 16 14 9.7225 -2.4126 -3.3856 17 1 9.1802 -3.6029 -4.0887 18 1 9.3323 -1.1829 -4.1209 19 1 11.2035 -2.5050 -3.3263 20 6 4.8094 -1.4849 -0.0076 21 6 3.6225 -0.7595 -0.0021 22 7 2.2924 -1.1202 -0.0005 23 1 1.9623 -2.0323 -0.0013 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8901 0.5136 27 1 1.9355 2.1236 -0.0004 28 1 4.9449 2.3809 -0.0007 29 1 6.7197 -2.9778 1.4295 30 1 6.3650 -3.4472 -0.1261 31 1 9.3101 -2.9102 0.2336 32 1 4.7829 -2.5645 -0.0125 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261023293.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:29 Heat of formation + Delta-G solvation = -17.391579 kcal Electronic energy + Delta-G solvation = -17545.741931 eV Core-core repulsion = 14612.703029 eV Total energy + Delta-G solvation = -2933.038902 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.70306 -42.24861 -38.78283 -36.17348 -33.66097 -32.82639 -31.31036 -29.89797 -28.63051 -26.78115 -24.17335 -23.34598 -21.87869 -21.10977 -19.05415 -18.57767 -18.23330 -17.07628 -16.73072 -16.33549 -15.90497 -15.59671 -15.51089 -15.14874 -14.93613 -14.24870 -14.03435 -13.76235 -13.67404 -13.58456 -13.46486 -12.83741 -12.65599 -12.37508 -12.00555 -11.94026 -11.79068 -11.00266 -10.54913 -10.45147 -9.44712 -8.98320 -8.65494 -8.39102 -6.26965 -0.00729 0.41757 1.53205 1.62784 1.69384 1.80404 2.10373 2.59390 2.72532 3.28313 3.36957 3.65272 3.88818 3.99156 4.08337 4.29877 4.33287 4.42524 4.46280 4.81038 4.84086 4.89744 4.97859 5.08855 5.14912 5.20641 5.41943 5.68947 5.79349 5.88928 6.10024 6.18916 6.59903 6.65541 6.74184 6.99064 7.63173 8.94991 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.031755 B = 0.006079 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.549404 B = 4605.140599 C = 4822.725318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.095 3.905 3 C -0.225 4.225 4 C -0.111 4.111 5 C -0.115 4.115 6 C 0.050 3.950 7 F -0.155 7.155 8 C -0.111 4.111 9 C 0.249 3.751 10 H 0.004 0.996 11 N -0.831 5.831 12 C -0.612 4.612 13 H 0.030 0.970 14 C -0.010 4.010 15 N -0.916 5.916 16 Si 1.113 2.887 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.113 4.113 21 C 0.081 3.919 22 N -0.583 5.583 23 H 0.427 0.573 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.168 0.832 28 H 0.149 0.851 29 H 0.320 0.680 30 H 0.333 0.667 31 H 0.278 0.722 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.724 5.014 1.766 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.014 4.014 3 C -0.249 4.249 4 C -0.116 4.116 5 C -0.134 4.134 6 C 0.029 3.971 7 F -0.134 7.134 8 C -0.116 4.116 9 C 0.139 3.861 10 H 0.022 0.978 11 N -0.361 5.361 12 C -0.651 4.651 13 H 0.049 0.951 14 C -0.213 4.213 15 N -0.552 5.552 16 Si 0.936 3.064 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.134 4.134 21 C -0.026 4.026 22 N -0.188 5.188 23 H 0.267 0.733 24 H 0.110 0.890 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.185 0.815 28 H 0.167 0.833 29 H 0.132 0.868 30 H 0.148 0.852 31 H 0.089 0.911 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.732 4.181 0.763 19.208 hybrid contribution -1.447 0.648 1.178 1.976 sum -20.179 4.829 1.941 20.840 Atomic orbital electron populations 1.20631 0.84032 1.05348 1.04529 1.21021 0.95280 0.84738 1.00335 1.21683 0.88275 0.99578 1.15408 1.19207 0.94066 0.92281 1.06050 1.20509 0.89237 1.00553 1.03131 1.17573 0.80718 0.90613 1.08175 1.91402 1.45226 1.82315 1.94463 1.20932 0.97974 0.93132 0.99521 1.17834 0.87905 0.84846 0.95469 0.97801 1.59129 1.52811 1.19084 1.05054 1.21878 1.11089 1.39063 0.93039 0.95148 1.26996 0.94138 0.92196 1.07988 1.70639 1.41152 1.40412 1.02953 0.82999 0.75822 0.76827 0.70769 1.19784 1.20749 1.20743 1.19615 0.88235 0.99627 1.05956 1.18149 0.85440 0.94098 1.04949 1.41755 1.02554 1.09408 1.65104 0.73343 0.89024 0.89676 0.87992 0.81450 0.83348 0.86783 0.85237 0.91070 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 10.39 71.24 0.74 -0.07 16 2 C 0.09 1.85 7.08 40.87 0.29 2.14 16 3 C -0.23 -5.44 10.95 23.51 0.26 -5.18 16 4 C -0.11 -3.66 6.37 -20.20 -0.13 -3.79 16 5 C -0.11 -4.23 10.07 22.51 0.23 -4.00 16 6 C 0.05 2.24 7.22 22.36 0.16 2.40 16 7 F -0.16 -7.62 16.63 44.97 0.75 -6.87 16 8 C -0.11 -5.10 5.02 -19.80 -0.10 -5.20 16 9 C 0.25 13.24 2.17 43.42 0.09 13.33 16 10 H 0.00 0.25 7.79 -2.38 -0.02 0.24 16 11 N -0.83 -39.07 7.26 -174.95 -1.27 -40.34 16 12 C -0.61 -36.23 8.70 25.60 0.22 -36.01 16 13 H 0.03 1.84 7.74 -2.91 -0.02 1.82 16 14 C -0.01 -0.57 5.39 84.65 0.46 -0.11 16 15 N -0.92 -57.59 13.51 21.45 0.29 -57.30 16 16 Si 1.11 52.87 29.90 68.60 2.05 54.92 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 20 C -0.11 -4.29 9.26 22.35 0.21 -4.08 16 21 C 0.08 2.64 7.27 38.99 0.28 2.92 16 22 N -0.58 -13.26 6.07 -175.89 -1.07 -14.33 16 23 H 0.43 6.96 8.96 -92.71 -0.83 6.13 16 24 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.15 4.62 8.06 -2.91 -0.02 4.59 16 29 H 0.32 13.13 9.06 -89.69 -0.81 12.32 16 30 H 0.33 14.67 7.25 -89.69 -0.65 14.02 16 31 H 0.28 17.66 6.39 -92.71 -0.59 17.07 16 32 H 0.13 4.56 6.20 -2.91 -0.02 4.55 16 Total: -1.00 -74.50 278.51 2.53 -71.97 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -0.93 Total: 29.62 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 2.71 Total: -37.66 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -2.05 Total: -111.97 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 0.75 Total: -6.87 kcal Atomic # 14 Polarization: 52.87 SS G_CDS: 2.05 Total: 54.92 kcal Total: -74.50 2.53 -71.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023293.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.576 kcal (2) G-P(sol) polarization free energy of solvation -74.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds