Wall clock time and date at job start Mon Mar 30 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37788 * 119.69126 * 2 1 4 4 C 1.38295 * 119.51388 * 179.97438 * 3 2 1 5 5 C 1.37812 * 120.01103 * 359.65272 * 4 3 2 6 6 C 1.50700 * 119.47077 * 180.08523 * 5 4 3 7 7 C 1.39280 * 121.05693 * 0.06812 * 5 4 3 8 8 C 1.38219 * 118.81876 * 0.59255 * 7 5 4 9 9 S 1.76453 * 122.29639 * 178.29484 * 8 7 5 10 10 C 1.81602 * 102.63310 * 13.37004 * 9 8 7 11 11 C 1.53539 * 107.31502 * 313.57991 * 10 9 8 12 12 C 1.50039 * 116.43674 * 180.71773 * 7 5 4 13 13 H 1.09004 * 108.66783 * 82.14819 * 12 7 5 14 14 C 1.50696 * 108.67159 * 324.12252 * 12 7 5 15 15 H 1.08005 * 119.99488 * 324.74610 * 14 12 7 16 16 C 1.37869 * 120.00747 * 144.74497 * 14 12 7 17 17 N 1.31516 * 119.99637 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00525 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47052 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.46859 * 299.99890 * 18 16 14 21 21 H 1.48493 * 109.47069 * 59.99573 * 18 16 14 22 22 H 1.08997 * 109.47495 * 90.00131 * 1 2 3 23 23 H 1.09001 * 109.47111 * 210.00532 * 1 2 3 24 24 H 1.09002 * 109.46942 * 329.99567 * 1 2 3 25 25 H 1.07998 * 120.23656 * 359.97438 * 3 2 1 26 26 H 1.07997 * 119.99502 * 179.63962 * 4 3 2 27 27 H 1.09001 * 109.47168 * 263.51757 * 6 5 4 28 28 H 1.09000 * 109.47421 * 23.51652 * 6 5 4 29 29 H 1.09000 * 109.47293 * 143.51575 * 6 5 4 30 30 H 1.09000 * 109.89251 * 73.03969 * 10 9 8 31 31 H 1.09001 * 109.88957 * 194.13459 * 10 9 8 32 32 H 1.09000 * 109.55530 * 312.75148 * 11 10 9 33 33 H 1.09001 * 109.55294 * 192.44315 * 11 10 9 34 34 H 0.97003 * 120.00392 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1895 1.1970 0.0000 4 6 3.5724 1.1927 0.0005 5 6 4.2580 -0.0028 0.0083 6 6 5.7650 0.0068 0.0108 7 6 3.5805 -1.2196 0.0143 8 6 2.1984 -1.2127 -0.0002 9 16 1.2485 -2.6993 -0.0386 10 6 2.4831 -3.9699 0.3602 11 6 3.7231 -3.6883 -0.5004 12 6 4.4292 -2.4567 0.0393 13 1 4.7302 -2.6524 1.0685 14 6 5.6662 -2.2098 -0.7851 15 1 5.6098 -1.5985 -1.6737 16 6 6.8700 -2.7642 -0.4052 17 7 6.9388 -3.5081 0.6772 18 14 8.4036 -2.4575 -1.4268 19 1 9.5577 -3.1596 -0.8101 20 1 8.1914 -2.9703 -2.8043 21 1 8.6805 -0.9995 -1.4785 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.6483 2.1316 -0.0004 26 1 4.1152 2.1263 -0.0053 27 1 6.1308 -0.1126 -1.0091 28 1 6.1217 0.9536 0.4161 29 1 6.1326 -0.8137 0.6270 30 1 2.7447 -3.9143 1.4169 31 1 2.0868 -4.9582 0.1270 32 1 3.4187 -3.5116 -1.5320 33 1 4.3979 -4.5433 -0.4588 34 1 7.7857 -3.8985 0.9444 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261026086.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:36 Heat of formation + Delta-G solvation = 14.949520 kcal Electronic energy + Delta-G solvation = -16329.309153 eV Core-core repulsion = 13931.593091 eV Total energy + Delta-G solvation = -2397.716062 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.13927 -35.65374 -32.95388 -32.21232 -30.06061 -28.69212 -26.93230 -24.59076 -22.88561 -22.38098 -20.61949 -18.99253 -16.72097 -16.22732 -15.20692 -14.92246 -14.41788 -14.24560 -13.48961 -13.24583 -12.77287 -12.45272 -12.29065 -12.18718 -11.95299 -11.86931 -11.55088 -11.22734 -11.10310 -10.79502 -10.73820 -10.42656 -10.35828 -9.85064 -9.65810 -9.15969 -9.11548 -8.73768 -8.44583 -7.47218 -6.72803 -6.16035 -4.07407 1.95845 2.11231 2.33414 3.07520 3.23028 3.29181 3.31868 4.28998 4.41887 5.10318 5.37311 5.46010 5.63880 5.73573 5.76704 5.80291 5.95096 6.08950 6.13558 6.19632 6.30912 6.40970 6.60540 6.68494 6.85473 6.87023 6.96618 7.07672 7.10404 7.23416 7.47523 7.61951 7.63294 7.77197 7.88755 8.21435 8.82979 9.40642 10.91900 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.026245 B = 0.009378 C = 0.007296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.603058 B = 2985.016369 C = 3836.958370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.090 4.090 3 C -0.127 4.127 4 C -0.135 4.135 5 C -0.053 4.053 6 C -0.097 4.097 7 C -0.040 4.040 8 C -0.086 4.086 9 S -0.159 6.159 10 C -0.103 4.103 11 C -0.098 4.098 12 C 0.056 3.944 13 H 0.074 0.926 14 C -0.496 4.496 15 H 0.061 0.939 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.885 3.115 19 H -0.287 1.287 20 H -0.276 1.276 21 H -0.272 1.272 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.074 0.926 28 H 0.016 0.984 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.553 4.098 -0.243 8.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.155 4.155 5 C -0.055 4.055 6 C -0.153 4.153 7 C -0.046 4.046 8 C -0.198 4.198 9 S 0.083 5.917 10 C -0.251 4.251 11 C -0.137 4.137 12 C 0.038 3.962 13 H 0.092 0.908 14 C -0.534 4.534 15 H 0.080 0.920 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.712 3.288 19 H -0.212 1.212 20 H -0.202 1.202 21 H -0.197 1.197 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.131 0.869 26 H 0.130 0.870 27 H 0.092 0.908 28 H 0.035 0.965 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.596 3.682 -0.338 9.357 hybrid contribution 2.199 0.355 -0.302 2.248 sum -6.397 4.038 -0.639 7.592 Atomic orbital electron populations 1.20732 0.91878 1.02274 1.01828 1.19476 0.95211 0.91665 1.03128 1.20621 0.94189 0.96229 1.03653 1.20908 0.93963 0.97463 1.03195 1.20114 0.97083 0.91437 0.96884 1.21322 0.90446 0.99853 1.03664 1.20406 0.90705 0.97735 0.95716 1.21162 0.95437 0.95019 1.08207 1.84752 1.18137 0.99554 1.89270 1.23946 0.98937 0.98101 1.04120 1.21698 0.93420 1.01192 0.97399 1.17744 0.92057 0.86489 0.99956 0.90830 1.20870 0.91883 1.30861 1.09797 0.92038 1.24867 0.98713 0.95546 0.95025 1.69881 1.26380 1.33024 1.23589 0.86738 0.82652 0.78796 0.80583 1.21226 1.20169 1.19745 0.91789 0.91033 0.92127 0.86874 0.87004 0.90806 0.96479 0.87887 0.89890 0.88903 0.92563 0.90473 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.45 36.01 0.34 -1.27 16 2 C -0.09 -1.63 5.90 -104.28 -0.62 -2.24 16 3 C -0.13 -2.19 9.69 -39.73 -0.38 -2.58 16 4 C -0.14 -2.50 9.63 -39.72 -0.38 -2.88 16 5 C -0.05 -1.13 5.69 -104.39 -0.59 -1.72 16 6 C -0.10 -2.07 7.88 36.01 0.28 -1.79 16 7 C -0.04 -0.90 5.53 -104.56 -0.58 -1.47 16 8 C -0.09 -1.76 6.05 -39.08 -0.24 -1.99 16 9 S -0.16 -2.91 19.97 -107.50 -2.15 -5.06 16 10 C -0.10 -1.90 6.52 37.44 0.24 -1.66 16 11 C -0.10 -2.11 5.04 -27.02 -0.14 -2.25 16 12 C 0.06 1.32 1.60 -93.81 -0.15 1.17 16 13 H 0.07 1.94 7.29 -51.93 -0.38 1.56 16 14 C -0.50 -12.33 4.18 -34.45 -0.14 -12.47 16 15 H 0.06 1.56 6.34 -52.48 -0.33 1.23 16 16 C 0.06 1.52 4.42 -17.82 -0.08 1.45 16 17 N -0.89 -23.72 12.79 55.43 0.71 -23.01 16 18 Si 0.88 19.98 29.50 -169.99 -5.01 14.97 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.07 1.06 6.61 -51.93 -0.34 0.72 16 24 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 25 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 26 H 0.11 1.79 8.04 -52.49 -0.42 1.37 16 27 H 0.07 1.62 6.10 -51.93 -0.32 1.30 16 28 H 0.02 0.31 8.01 -51.93 -0.42 -0.10 16 29 H 0.10 2.47 5.25 -51.93 -0.27 2.20 16 30 H 0.08 1.56 8.07 -51.93 -0.42 1.14 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.06 1.23 8.03 -51.93 -0.42 0.81 16 33 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 277.78 15.07 4.19 4.19 Total: -1.00 -25.92 277.78 -9.26 -35.18 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.56 Total: 3.45 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: -2.43 Total: -29.71 kcal Atomic # 7 Polarization: -23.72 SS G_CDS: 0.71 Total: -23.01 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.01 Total: 14.97 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -2.15 Total: -5.06 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -25.92 -9.26 -35.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026086.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.131 kcal (2) G-P(sol) polarization free energy of solvation -25.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds