Wall clock time and date at job start Mon Mar 30 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37788 * 119.69126 * 2 1 4 4 C 1.38295 * 119.51388 * 179.97438 * 3 2 1 5 5 C 1.37812 * 120.01103 * 359.65272 * 4 3 2 6 6 C 1.50700 * 119.47077 * 180.08523 * 5 4 3 7 7 C 1.39280 * 121.05693 * 0.06812 * 5 4 3 8 8 C 1.38219 * 118.81876 * 0.59255 * 7 5 4 9 9 S 1.76453 * 122.29639 * 178.29484 * 8 7 5 10 10 C 1.81602 * 102.63310 * 13.37004 * 9 8 7 11 11 C 1.53539 * 107.31502 * 313.57991 * 10 9 8 12 12 C 1.50039 * 116.43674 * 180.71773 * 7 5 4 13 13 H 1.09004 * 108.66783 * 82.14819 * 12 7 5 14 14 C 1.50696 * 108.67159 * 324.12252 * 12 7 5 15 15 H 1.08005 * 119.99488 * 324.74610 * 14 12 7 16 16 C 1.37869 * 120.00747 * 144.74497 * 14 12 7 17 17 N 1.31516 * 119.99637 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00525 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47052 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.46859 * 299.99890 * 18 16 14 21 21 H 1.48493 * 109.47069 * 59.99573 * 18 16 14 22 22 H 1.08997 * 109.47495 * 90.00131 * 1 2 3 23 23 H 1.09001 * 109.47111 * 210.00532 * 1 2 3 24 24 H 1.09002 * 109.46942 * 329.99567 * 1 2 3 25 25 H 1.07998 * 120.23656 * 359.97438 * 3 2 1 26 26 H 1.07997 * 119.99502 * 179.63962 * 4 3 2 27 27 H 1.09001 * 109.47168 * 263.51757 * 6 5 4 28 28 H 1.09000 * 109.47421 * 23.51652 * 6 5 4 29 29 H 1.09000 * 109.47293 * 143.51575 * 6 5 4 30 30 H 1.09000 * 109.89251 * 73.03969 * 10 9 8 31 31 H 1.09001 * 109.88957 * 194.13459 * 10 9 8 32 32 H 1.09000 * 109.55530 * 312.75148 * 11 10 9 33 33 H 1.09001 * 109.55294 * 192.44315 * 11 10 9 34 34 H 0.97003 * 120.00392 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1895 1.1970 0.0000 4 6 3.5724 1.1927 0.0005 5 6 4.2580 -0.0028 0.0083 6 6 5.7650 0.0068 0.0108 7 6 3.5805 -1.2196 0.0143 8 6 2.1984 -1.2127 -0.0002 9 16 1.2485 -2.6993 -0.0386 10 6 2.4831 -3.9699 0.3602 11 6 3.7231 -3.6883 -0.5004 12 6 4.4292 -2.4567 0.0393 13 1 4.7302 -2.6524 1.0685 14 6 5.6662 -2.2098 -0.7851 15 1 5.6098 -1.5985 -1.6737 16 6 6.8700 -2.7642 -0.4052 17 7 6.9388 -3.5081 0.6772 18 14 8.4036 -2.4575 -1.4268 19 1 9.5577 -3.1596 -0.8101 20 1 8.1914 -2.9703 -2.8043 21 1 8.6805 -0.9995 -1.4785 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.6483 2.1316 -0.0004 26 1 4.1152 2.1263 -0.0053 27 1 6.1308 -0.1126 -1.0091 28 1 6.1217 0.9536 0.4161 29 1 6.1326 -0.8137 0.6270 30 1 2.7447 -3.9143 1.4169 31 1 2.0868 -4.9582 0.1270 32 1 3.4187 -3.5116 -1.5320 33 1 4.3979 -4.5433 -0.4588 34 1 7.7857 -3.8985 0.9444 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261026086.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:36 Heat of formation + Delta-G solvation = 3.640576 kcal Electronic energy + Delta-G solvation = -16329.799546 eV Core-core repulsion = 13931.593091 eV Total energy + Delta-G solvation = -2398.206454 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.67852 -37.30510 -34.53564 -34.00834 -31.57773 -30.22179 -28.62231 -26.16917 -24.59315 -23.93198 -22.17168 -20.61516 -18.65889 -17.71977 -16.83403 -16.56637 -15.97626 -15.78905 -14.92230 -14.89925 -14.37833 -13.97535 -13.91365 -13.79030 -13.52567 -13.34950 -13.01322 -12.88150 -12.63122 -12.53560 -12.37108 -12.16672 -12.04963 -11.51245 -11.32811 -10.97729 -10.73496 -10.38431 -10.26716 -9.03940 -8.21861 -8.10076 -6.07013 0.46034 0.61551 0.85496 1.40476 1.42652 1.48276 1.55468 2.41772 2.89406 3.15962 4.04169 4.08966 4.11116 4.14808 4.32513 4.51726 4.51931 4.61446 4.79470 4.86079 4.87715 4.95277 4.98019 5.11969 5.17171 5.21490 5.35728 5.47166 5.56783 5.60094 5.71707 5.75629 5.87562 6.07642 6.23474 6.37966 6.85596 7.42376 8.95676 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.026245 B = 0.009378 C = 0.007296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.603058 B = 2985.016369 C = 3836.958370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.093 4.093 3 C -0.118 4.118 4 C -0.132 4.132 5 C -0.082 4.082 6 C -0.087 4.087 7 C -0.073 4.073 8 C -0.111 4.111 9 S -0.126 6.126 10 C -0.102 4.102 11 C -0.091 4.091 12 C 0.060 3.940 13 H 0.035 0.965 14 C -0.489 4.489 15 H 0.053 0.947 16 C 0.021 3.979 17 N -0.922 5.922 18 Si 0.933 3.067 19 H -0.288 1.288 20 H -0.276 1.276 21 H -0.263 1.263 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.155 0.845 26 H 0.139 0.861 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 5.965 -0.804 11.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.152 4.152 5 C -0.084 4.084 6 C -0.143 4.143 7 C -0.079 4.079 8 C -0.223 4.223 9 S 0.116 5.884 10 C -0.250 4.250 11 C -0.130 4.130 12 C 0.042 3.958 13 H 0.053 0.947 14 C -0.528 4.528 15 H 0.071 0.929 16 C -0.177 4.177 17 N -0.562 5.562 18 Si 0.760 3.240 19 H -0.214 1.214 20 H -0.201 1.201 21 H -0.188 1.188 22 H 0.094 0.906 23 H 0.086 0.914 24 H 0.107 0.893 25 H 0.173 0.827 26 H 0.157 0.843 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.139 0.861 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.504 5.559 -0.908 11.919 hybrid contribution 2.698 -0.139 -0.121 2.704 sum -7.806 5.420 -1.028 9.558 Atomic orbital electron populations 1.20790 0.89131 1.03541 1.02945 1.19992 0.97262 0.91086 1.01515 1.21103 0.93759 0.97590 1.01299 1.21216 0.94949 0.97277 1.01769 1.20230 0.96855 0.92494 0.98796 1.21061 0.91282 0.99682 1.02271 1.20317 0.91799 0.97287 0.98459 1.21502 0.95106 0.97093 1.08606 1.84520 1.16598 0.98174 1.89122 1.23872 0.98037 1.00130 1.02986 1.21486 0.94378 0.99594 0.97535 1.17580 0.92455 0.88313 0.97476 0.94749 1.20962 0.92753 1.29809 1.09229 0.92928 1.25406 1.00933 0.95571 0.95788 1.69995 1.26636 1.34458 1.25123 0.85961 0.79877 0.79037 0.79171 1.21358 1.20110 1.18782 0.90566 0.91397 0.89261 0.82749 0.84344 0.92046 0.94139 0.91300 0.90608 0.86076 0.93100 0.92543 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.69 9.45 71.24 0.67 -2.02 16 2 C -0.09 -3.10 5.90 -19.64 -0.12 -3.22 16 3 C -0.12 -3.60 9.69 22.18 0.21 -3.38 16 4 C -0.13 -4.53 9.63 22.18 0.21 -4.32 16 5 C -0.08 -3.46 5.69 -19.71 -0.11 -3.57 16 6 C -0.09 -3.75 7.88 71.24 0.56 -3.19 16 7 C -0.07 -3.30 5.53 -19.82 -0.11 -3.41 16 8 C -0.11 -4.40 6.05 22.59 0.14 -4.27 16 9 S -0.13 -4.43 19.97 -56.49 -1.13 -5.56 16 10 C -0.10 -3.77 6.52 72.16 0.47 -3.30 16 11 C -0.09 -4.03 5.04 30.41 0.15 -3.88 16 12 C 0.06 2.96 1.60 -12.86 -0.02 2.94 16 13 H 0.03 1.94 7.29 -2.38 -0.02 1.93 16 14 C -0.49 -25.26 4.18 25.60 0.11 -25.16 16 15 H 0.05 2.76 6.34 -2.91 -0.02 2.74 16 16 C 0.02 1.12 4.42 84.65 0.37 1.49 16 17 N -0.92 -51.39 12.79 21.44 0.27 -51.11 16 18 Si 0.93 41.87 29.50 68.60 2.02 43.90 16 19 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.07 1.78 6.61 -2.39 -0.02 1.76 16 24 H 0.09 1.75 8.08 -2.39 -0.02 1.73 16 25 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 26 H 0.14 3.93 8.04 -2.91 -0.02 3.90 16 27 H 0.06 2.74 6.10 -2.39 -0.01 2.72 16 28 H 0.04 1.50 8.01 -2.39 -0.02 1.48 16 29 H 0.07 3.44 5.25 -2.39 -0.01 3.43 16 30 H 0.08 2.90 8.07 -2.39 -0.02 2.88 16 31 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 32 H 0.05 2.27 8.03 -2.39 -0.02 2.25 16 33 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -57.54 277.78 4.81 -52.73 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.09 Total: 15.32 kcal Atomic # 6 Polarization: -57.82 SS G_CDS: 2.55 Total: -55.27 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.27 Total: -51.11 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.02 Total: 43.90 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -1.13 Total: -5.56 kcal Total: -57.54 4.81 -52.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026086.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.371 kcal (2) G-P(sol) polarization free energy of solvation -57.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds