Wall clock time and date at job start Mon Mar 30 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37781 * 119.68911 * 2 1 4 4 C 1.38297 * 119.51286 * 180.02562 * 3 2 1 5 5 C 1.37814 * 120.01433 * 0.30786 * 4 3 2 6 6 C 1.50696 * 119.47466 * 179.97438 * 5 4 3 7 7 C 1.39285 * 121.05177 * 0.02562 * 5 4 3 8 8 C 1.38219 * 118.81497 * 359.34712 * 7 5 4 9 9 S 1.76467 * 122.28871 * 181.65989 * 8 7 5 10 10 C 1.81608 * 102.63019 * 346.48438 * 9 8 7 11 11 C 1.53522 * 107.32617 * 46.44618 * 10 9 8 12 12 C 1.50038 * 116.44047 * 178.97649 * 7 5 4 13 13 H 1.08999 * 108.66479 * 278.10548 * 12 7 5 14 14 C 1.50699 * 108.66828 * 36.13074 * 12 7 5 15 15 H 1.07999 * 119.99906 * 35.60536 * 14 12 7 16 16 C 1.37870 * 120.00243 * 215.60549 * 14 12 7 17 17 N 1.31516 * 120.00235 * 183.26941 * 16 14 12 18 18 Si 1.86801 * 120.00249 * 3.26705 * 16 14 12 19 19 H 1.48495 * 109.47030 * 91.58699 * 18 16 14 20 20 H 1.48501 * 109.47567 * 211.58933 * 18 16 14 21 21 H 1.48501 * 109.47000 * 331.59136 * 18 16 14 22 22 H 1.09004 * 109.47336 * 90.00728 * 1 2 3 23 23 H 1.09007 * 109.47298 * 210.00430 * 1 2 3 24 24 H 1.08999 * 109.47450 * 330.00123 * 1 2 3 25 25 H 1.08000 * 120.24330 * 0.02562 * 3 2 1 26 26 H 1.07998 * 119.99341 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.47355 * 96.98087 * 6 5 4 28 28 H 1.09001 * 109.47096 * 216.97934 * 6 5 4 29 29 H 1.09000 * 109.47077 * 336.98090 * 6 5 4 30 30 H 1.09003 * 109.88969 * 286.98786 * 10 9 8 31 31 H 1.09002 * 109.94274 * 165.93273 * 10 9 8 32 32 H 1.09000 * 109.55015 * 167.58669 * 11 10 9 33 33 H 1.08994 * 109.55519 * 47.28800 * 11 10 9 34 34 H 0.97002 * 120.00542 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1969 0.0000 4 6 3.5724 1.1927 -0.0005 5 6 4.2581 -0.0027 -0.0075 6 6 5.7650 0.0068 -0.0086 7 6 3.5805 -1.2196 -0.0146 8 6 2.1984 -1.2126 -0.0008 9 16 1.2485 -2.6994 0.0350 10 6 2.4826 -3.9689 -0.3693 11 6 3.7237 -3.6903 0.4903 12 6 4.4290 -2.4566 -0.0458 13 1 4.7304 -2.6470 -1.0758 14 6 5.6658 -2.2141 0.7805 15 1 5.6079 -1.6122 1.6753 16 6 6.8711 -2.7607 0.3941 17 7 7.9366 -2.6031 1.1487 18 14 6.9908 -3.7254 -1.2011 19 1 7.3735 -2.8097 -2.3057 20 1 8.0181 -4.7884 -1.0609 21 1 5.6757 -4.3448 -1.5048 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6483 2.1316 0.0004 26 1 4.1151 2.1264 -0.0001 27 1 6.1300 -0.1212 1.0105 28 1 6.1331 -0.8085 -0.6314 29 1 6.1220 0.9571 -0.4056 30 1 2.7427 -3.9099 -1.4262 31 1 2.0871 -4.9584 -0.1397 32 1 4.3984 -4.5451 0.4446 33 1 3.4209 -3.5175 1.5230 34 1 8.7846 -2.9880 0.8771 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261026089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:39 Heat of formation + Delta-G solvation = 19.328107 kcal Electronic energy + Delta-G solvation = -16384.116926 eV Core-core repulsion = 13986.590734 eV Total energy + Delta-G solvation = -2397.526192 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.26887 -35.83120 -33.09951 -32.26847 -30.19353 -28.82888 -27.36567 -24.47812 -22.73714 -22.54166 -20.73056 -19.00691 -17.30882 -16.32323 -15.38212 -14.87384 -14.46916 -14.26695 -13.64064 -13.37130 -12.87773 -12.61648 -12.59235 -12.22380 -12.08344 -12.05573 -11.67039 -11.31015 -11.08789 -10.95554 -10.71836 -10.47248 -10.10778 -10.02148 -9.85051 -9.35104 -9.17984 -8.86480 -8.51255 -7.54809 -6.83729 -6.20200 -4.07074 1.85724 2.01704 2.19131 2.93369 3.16133 3.26118 3.28390 4.28041 4.29907 5.03387 5.29759 5.36181 5.46079 5.53505 5.65536 5.72154 5.88477 5.89751 6.03891 6.08378 6.16914 6.28932 6.42076 6.46676 6.65954 6.72885 6.84197 6.96729 7.03034 7.08767 7.15041 7.43045 7.51424 7.60918 7.82802 8.36775 8.80067 9.37649 10.91647 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.010260 C = 0.007895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.680371 B = 2728.340252 C = 3545.814686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.091 4.091 3 C -0.122 4.122 4 C -0.135 4.135 5 C -0.048 4.048 6 C -0.091 4.091 7 C -0.044 4.044 8 C -0.083 4.083 9 S -0.151 6.151 10 C -0.109 4.109 11 C -0.108 4.108 12 C 0.036 3.964 13 H 0.046 0.954 14 C -0.497 4.497 15 H 0.083 0.917 16 C 0.070 3.930 17 N -0.891 5.891 18 Si 0.862 3.138 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.262 1.262 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.017 0.983 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.232 2.514 -3.667 11.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.096 4.096 3 C -0.141 4.141 4 C -0.155 4.155 5 C -0.050 4.050 6 C -0.147 4.147 7 C -0.049 4.049 8 C -0.195 4.195 9 S 0.091 5.909 10 C -0.257 4.257 11 C -0.147 4.147 12 C 0.017 3.983 13 H 0.064 0.936 14 C -0.535 4.535 15 H 0.101 0.899 16 C -0.132 4.132 17 N -0.528 5.528 18 Si 0.689 3.311 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.187 1.187 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.036 0.964 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.199 2.166 -3.432 11.912 hybrid contribution 1.549 -0.342 -1.080 1.919 sum -9.650 1.824 -4.512 10.808 Atomic orbital electron populations 1.20691 0.91745 1.01996 1.01911 1.19468 0.95259 0.91589 1.03312 1.20668 0.94220 0.96295 1.02937 1.20930 0.93935 0.97552 1.03054 1.20207 0.97401 0.91355 0.95990 1.21274 0.89669 0.99005 1.04744 1.20049 0.90594 0.96982 0.97291 1.21154 0.95303 0.95156 1.07909 1.84804 1.17552 0.99227 1.89364 1.23952 0.99161 0.98842 1.03720 1.21899 0.93796 1.00164 0.98815 1.18044 0.94460 0.88122 0.97650 0.93616 1.20765 0.89967 1.32343 1.10396 0.89898 1.24917 0.95674 0.95884 0.96705 1.69854 1.00452 1.45079 1.37433 0.87076 0.78291 0.80824 0.84937 1.20064 1.21218 1.18690 0.91550 0.91480 0.91991 0.86675 0.86733 0.89231 0.89457 0.96400 0.90130 0.88490 0.91016 0.91097 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 9.49 36.01 0.34 -1.15 16 2 C -0.09 -1.59 5.90 -104.29 -0.62 -2.21 16 3 C -0.12 -2.02 9.69 -39.73 -0.38 -2.41 16 4 C -0.13 -2.43 9.63 -39.71 -0.38 -2.81 16 5 C -0.05 -0.99 5.70 -104.39 -0.60 -1.59 16 6 C -0.09 -1.97 7.88 36.00 0.28 -1.69 16 7 C -0.04 -0.94 5.53 -104.56 -0.58 -1.52 16 8 C -0.08 -1.63 6.05 -39.09 -0.24 -1.87 16 9 S -0.15 -2.64 19.94 -107.50 -2.14 -4.78 16 10 C -0.11 -1.88 6.52 37.43 0.24 -1.64 16 11 C -0.11 -2.19 4.84 -27.03 -0.13 -2.32 16 12 C 0.04 0.81 1.14 -93.81 -0.11 0.70 16 13 H 0.05 1.06 5.22 -51.93 -0.27 0.79 16 14 C -0.50 -12.55 4.73 -34.44 -0.16 -12.71 16 15 H 0.08 2.32 6.62 -52.49 -0.35 1.98 16 16 C 0.07 1.83 4.56 -17.82 -0.08 1.75 16 17 N -0.89 -24.98 13.96 55.43 0.77 -24.21 16 18 Si 0.86 19.93 26.18 -169.99 -4.45 15.48 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.26 -5.77 6.30 56.52 0.36 -5.41 16 22 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.07 0.96 6.54 -51.93 -0.34 0.62 16 24 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 25 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 26 H 0.11 1.80 8.03 -52.49 -0.42 1.38 16 27 H 0.09 2.13 6.13 -51.93 -0.32 1.81 16 28 H 0.09 2.05 4.90 -51.93 -0.25 1.80 16 29 H 0.02 0.33 8.01 -51.93 -0.42 -0.08 16 30 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16 31 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.07 1.47 7.45 -51.93 -0.39 1.08 16 33 H 0.07 1.49 8.03 -51.93 -0.42 1.07 16 34 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 272.00 15.07 4.10 4.10 Total: -1.00 -26.88 272.00 -8.59 -35.47 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.46 Total: 3.40 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: -2.40 Total: -29.46 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.77 Total: -24.21 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.45 Total: 15.48 kcal Atomic # 16 Polarization: -2.64 SS G_CDS: -2.14 Total: -4.78 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.88 -8.59 -35.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.796 kcal (2) G-P(sol) polarization free energy of solvation -26.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds