Wall clock time and date at job start Mon Mar 30 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37781 * 119.68911 * 2 1 4 4 C 1.38297 * 119.51286 * 180.02562 * 3 2 1 5 5 C 1.37814 * 120.01433 * 0.30786 * 4 3 2 6 6 C 1.50696 * 119.47466 * 179.97438 * 5 4 3 7 7 C 1.39285 * 121.05177 * 0.02562 * 5 4 3 8 8 C 1.38219 * 118.81497 * 359.34712 * 7 5 4 9 9 S 1.76467 * 122.28871 * 181.65989 * 8 7 5 10 10 C 1.81608 * 102.63019 * 346.48438 * 9 8 7 11 11 C 1.53522 * 107.32617 * 46.44618 * 10 9 8 12 12 C 1.50038 * 116.44047 * 178.97649 * 7 5 4 13 13 H 1.08999 * 108.66479 * 278.10548 * 12 7 5 14 14 C 1.50699 * 108.66828 * 36.13074 * 12 7 5 15 15 H 1.07999 * 119.99906 * 35.60536 * 14 12 7 16 16 C 1.37870 * 120.00243 * 215.60549 * 14 12 7 17 17 N 1.31516 * 120.00235 * 183.26941 * 16 14 12 18 18 Si 1.86801 * 120.00249 * 3.26705 * 16 14 12 19 19 H 1.48495 * 109.47030 * 91.58699 * 18 16 14 20 20 H 1.48501 * 109.47567 * 211.58933 * 18 16 14 21 21 H 1.48501 * 109.47000 * 331.59136 * 18 16 14 22 22 H 1.09004 * 109.47336 * 90.00728 * 1 2 3 23 23 H 1.09007 * 109.47298 * 210.00430 * 1 2 3 24 24 H 1.08999 * 109.47450 * 330.00123 * 1 2 3 25 25 H 1.08000 * 120.24330 * 0.02562 * 3 2 1 26 26 H 1.07998 * 119.99341 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.47355 * 96.98087 * 6 5 4 28 28 H 1.09001 * 109.47096 * 216.97934 * 6 5 4 29 29 H 1.09000 * 109.47077 * 336.98090 * 6 5 4 30 30 H 1.09003 * 109.88969 * 286.98786 * 10 9 8 31 31 H 1.09002 * 109.94274 * 165.93273 * 10 9 8 32 32 H 1.09000 * 109.55015 * 167.58669 * 11 10 9 33 33 H 1.08994 * 109.55519 * 47.28800 * 11 10 9 34 34 H 0.97002 * 120.00542 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1969 0.0000 4 6 3.5724 1.1927 -0.0005 5 6 4.2581 -0.0027 -0.0075 6 6 5.7650 0.0068 -0.0086 7 6 3.5805 -1.2196 -0.0146 8 6 2.1984 -1.2126 -0.0008 9 16 1.2485 -2.6994 0.0350 10 6 2.4826 -3.9689 -0.3693 11 6 3.7237 -3.6903 0.4903 12 6 4.4290 -2.4566 -0.0458 13 1 4.7304 -2.6470 -1.0758 14 6 5.6658 -2.2141 0.7805 15 1 5.6079 -1.6122 1.6753 16 6 6.8711 -2.7607 0.3941 17 7 7.9366 -2.6031 1.1487 18 14 6.9908 -3.7254 -1.2011 19 1 7.3735 -2.8097 -2.3057 20 1 8.0181 -4.7884 -1.0609 21 1 5.6757 -4.3448 -1.5048 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6483 2.1316 0.0004 26 1 4.1151 2.1264 -0.0001 27 1 6.1300 -0.1212 1.0105 28 1 6.1331 -0.8085 -0.6314 29 1 6.1220 0.9571 -0.4056 30 1 2.7427 -3.9099 -1.4262 31 1 2.0871 -4.9584 -0.1397 32 1 4.3984 -4.5451 0.4446 33 1 3.4209 -3.5175 1.5230 34 1 8.7846 -2.9880 0.8771 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261026089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:39 Heat of formation + Delta-G solvation = 5.957166 kcal Electronic energy + Delta-G solvation = -16384.696733 eV Core-core repulsion = 13986.590734 eV Total energy + Delta-G solvation = -2398.106000 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.77518 -37.42367 -34.68421 -34.07388 -31.65157 -30.36969 -28.98423 -25.99999 -24.45388 -24.02258 -22.23235 -20.58305 -19.27589 -17.76002 -16.92472 -16.44707 -16.09404 -15.76709 -15.23249 -14.80599 -14.46080 -14.33324 -14.03479 -13.69904 -13.66485 -13.41006 -13.13085 -12.92320 -12.62488 -12.60643 -12.37303 -12.11519 -11.82744 -11.70314 -11.47488 -11.09347 -10.77709 -10.52061 -10.32461 -9.08023 -8.25345 -8.21477 -6.12944 0.40611 0.55976 0.80441 1.29768 1.35136 1.41769 1.51715 2.33269 2.83424 3.07187 3.94921 4.00590 4.03513 4.07907 4.25035 4.42638 4.48192 4.53194 4.68244 4.74530 4.81328 4.87090 4.90463 5.01975 5.06723 5.14149 5.27678 5.32053 5.42829 5.51815 5.64075 5.67414 5.78976 6.00876 6.22321 6.34757 6.72856 7.33330 8.90778 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.010260 C = 0.007895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.680371 B = 2728.340252 C = 3545.814686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.093 4.093 3 C -0.113 4.113 4 C -0.133 4.133 5 C -0.079 4.079 6 C -0.078 4.078 7 C -0.075 4.075 8 C -0.105 4.105 9 S -0.123 6.123 10 C -0.108 4.108 11 C -0.106 4.106 12 C 0.037 3.963 13 H 0.039 0.961 14 C -0.477 4.477 15 H 0.041 0.959 16 C 0.024 3.976 17 N -0.939 5.939 18 Si 0.913 3.087 19 H -0.273 1.273 20 H -0.289 1.289 21 H -0.241 1.241 22 H 0.082 0.918 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.156 0.844 26 H 0.137 0.863 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.200 3.058 -5.008 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.098 4.098 3 C -0.133 4.133 4 C -0.153 4.153 5 C -0.081 4.081 6 C -0.134 4.134 7 C -0.080 4.080 8 C -0.217 4.217 9 S 0.118 5.882 10 C -0.255 4.255 11 C -0.145 4.145 12 C 0.019 3.981 13 H 0.056 0.944 14 C -0.515 4.515 15 H 0.059 0.941 16 C -0.174 4.174 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.199 1.199 20 H -0.215 1.215 21 H -0.165 1.165 22 H 0.100 0.900 23 H 0.081 0.919 24 H 0.106 0.894 25 H 0.174 0.826 26 H 0.155 0.845 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.146 0.854 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.198 2.707 -4.779 15.224 hybrid contribution 2.384 -0.383 -0.593 2.486 sum -11.815 2.324 -5.373 13.186 Atomic orbital electron populations 1.20757 0.88943 1.03110 1.03230 1.20000 0.97330 0.91031 1.01455 1.21128 0.93609 0.97772 1.00744 1.21211 0.95044 0.97241 1.01797 1.20245 0.96625 0.92746 0.98457 1.20948 0.91153 0.99159 1.02151 1.20004 0.91773 0.96497 0.99749 1.21474 0.94861 0.97353 1.08044 1.84636 1.16329 0.97955 1.89246 1.23945 0.97785 1.00638 1.03171 1.21731 0.95231 0.98867 0.98663 1.17981 0.93723 0.89942 0.96482 0.94358 1.20744 0.91507 1.30339 1.08932 0.94080 1.25516 0.95254 0.97110 0.99488 1.69991 1.01073 1.47253 1.39563 0.86236 0.79025 0.79539 0.81404 1.19906 1.21481 1.16478 0.89967 0.91884 0.89374 0.82618 0.84497 0.92726 0.91929 0.94196 0.89690 0.85375 0.91454 0.92382 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.44 9.49 71.24 0.68 -1.77 16 2 C -0.09 -2.95 5.90 -19.65 -0.12 -3.06 16 3 C -0.11 -3.34 9.69 22.18 0.21 -3.13 16 4 C -0.13 -4.53 9.63 22.18 0.21 -4.32 16 5 C -0.08 -3.31 5.70 -19.71 -0.11 -3.42 16 6 C -0.08 -3.51 7.88 71.23 0.56 -2.95 16 7 C -0.07 -3.21 5.53 -19.82 -0.11 -3.32 16 8 C -0.11 -3.95 6.05 22.59 0.14 -3.81 16 9 S -0.12 -4.00 19.94 -56.49 -1.13 -5.12 16 10 C -0.11 -3.47 6.52 72.16 0.47 -3.00 16 11 C -0.11 -4.26 4.84 30.40 0.15 -4.11 16 12 C 0.04 1.70 1.14 -12.86 -0.01 1.69 16 13 H 0.04 1.78 5.22 -2.39 -0.01 1.77 16 14 C -0.48 -25.27 4.73 25.60 0.12 -25.15 16 15 H 0.04 2.48 6.62 -2.91 -0.02 2.46 16 16 C 0.02 1.28 4.56 84.65 0.39 1.67 16 17 N -0.94 -55.34 13.96 21.44 0.30 -55.04 16 18 Si 0.91 41.80 26.18 68.60 1.80 43.60 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.24 -10.12 6.30 99.48 0.63 -9.49 16 22 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.06 1.56 6.54 -2.38 -0.02 1.54 16 24 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16 25 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 26 H 0.14 3.94 8.03 -2.91 -0.02 3.92 16 27 H 0.05 2.79 6.13 -2.39 -0.01 2.78 16 28 H 0.06 3.07 4.90 -2.39 -0.01 3.06 16 29 H 0.04 1.55 8.01 -2.39 -0.02 1.53 16 30 H 0.08 2.70 8.08 -2.39 -0.02 2.68 16 31 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.07 2.72 7.45 -2.39 -0.02 2.70 16 33 H 0.06 2.45 8.03 -2.39 -0.02 2.43 16 34 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -60.65 272.00 4.56 -56.09 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.02 Total: 15.16 kcal Atomic # 6 Polarization: -57.25 SS G_CDS: 2.58 Total: -54.68 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.30 Total: -55.04 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.80 Total: 43.60 kcal Atomic # 16 Polarization: -4.00 SS G_CDS: -1.13 Total: -5.12 kcal Total: -60.65 4.56 -56.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.042 kcal (2) G-P(sol) polarization free energy of solvation -60.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds