Wall clock time and date at job start Mon Mar 30 2020 06:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36880 * 125.06274 * 2 1 4 4 C 1.34211 * 109.92064 * 180.19843 * 3 2 1 5 5 C 1.46511 * 106.98926 * 359.63018 * 4 3 2 6 6 C 1.37702 * 125.06342 * 179.78826 * 2 1 3 7 7 C 1.39130 * 133.40926 * 359.97438 * 6 2 1 8 8 C 1.37749 * 119.96059 * 180.02562 * 7 6 2 9 9 C 1.38789 * 120.69911 * 359.95577 * 8 7 6 10 10 C 1.50697 * 119.82909 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.47611 * 219.97370 * 10 9 8 12 12 N 1.46899 * 109.47154 * 339.97822 * 10 9 8 13 13 C 1.50700 * 109.46938 * 99.97426 * 10 9 8 14 14 H 1.08003 * 120.00235 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99810 * 180.02562 * 13 10 9 16 16 N 1.31511 * 119.99749 * 179.97438 * 15 13 10 17 17 Si 1.86800 * 120.00029 * 0.02562 * 15 13 10 18 18 H 1.48496 * 109.47242 * 89.99939 * 17 15 13 19 19 H 1.48502 * 109.46792 * 209.99880 * 17 15 13 20 20 H 1.48500 * 109.47079 * 329.99555 * 17 15 13 21 21 C 1.37871 * 120.34942 * 359.97438 * 9 8 7 22 22 F 1.35099 * 120.19441 * 180.02562 * 21 9 8 23 23 H 1.09005 * 109.46809 * 270.21085 * 1 2 3 24 24 H 1.09000 * 109.47037 * 30.21070 * 1 2 3 25 25 H 1.09002 * 109.47286 * 150.21387 * 1 2 3 26 26 H 1.07999 * 125.04274 * 0.09471 * 3 2 1 27 27 H 1.08002 * 126.50915 * 179.89952 * 4 3 2 28 28 H 1.07993 * 120.01941 * 0.02728 * 7 6 2 29 29 H 1.08009 * 119.65191 * 179.97438 * 8 7 6 30 30 H 1.00910 * 111.00058 * 59.99582 * 12 10 9 31 31 H 1.00890 * 111.00283 * 183.95129 * 12 10 9 32 32 H 0.97000 * 120.00218 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.1204 0.0000 4 6 3.5469 0.7698 -0.0044 5 6 3.5941 -0.6945 0.0016 6 6 2.2561 -1.1271 0.0042 7 6 1.9781 -2.4903 0.0097 8 6 3.0100 -3.4029 0.0134 9 6 4.3313 -2.9783 0.0109 10 6 5.4449 -3.9936 0.0145 11 1 6.2444 -3.6538 0.6728 12 7 4.9303 -5.2831 0.4944 13 6 5.9811 -4.1561 -1.3845 14 1 5.5581 -3.5812 -2.1951 15 6 7.0117 -5.0386 -1.6296 16 7 7.4792 -5.1807 -2.8506 17 14 7.7428 -6.0334 -0.2277 18 1 7.0070 -7.3163 -0.0947 19 1 9.1739 -6.3106 -0.5114 20 1 7.6290 -5.2639 1.0372 21 6 4.6306 -1.6325 0.0040 22 9 5.9179 -1.2227 0.0010 23 1 -0.3633 0.0038 1.0277 24 1 -0.3633 0.8881 -0.5171 25 1 -0.3634 -0.8919 -0.5105 26 1 1.8839 2.1359 0.0015 27 1 4.3939 1.4399 -0.0070 28 1 0.9539 -2.8329 0.0109 29 1 2.7884 -4.4600 0.0181 30 1 4.1873 -5.6197 -0.0998 31 1 5.6714 -5.9637 0.5673 32 1 8.2045 -5.8013 -3.0230 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261026738.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:29 Heat of formation + Delta-G solvation = 4.230493 kcal Electronic energy + Delta-G solvation = -17715.075163 eV Core-core repulsion = 14782.973864 eV Total energy + Delta-G solvation = -2932.101299 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.64558 -42.11227 -38.77062 -36.08246 -33.94582 -33.57324 -30.87896 -29.61858 -28.25767 -27.01543 -24.37807 -23.44620 -21.39407 -21.13984 -19.21758 -18.48177 -18.00578 -17.39892 -16.64527 -16.27372 -16.13206 -15.92175 -15.84226 -15.34393 -14.55431 -14.38936 -14.19022 -13.81719 -13.53571 -13.46411 -13.31291 -12.97126 -12.80976 -12.59942 -12.14083 -11.94472 -11.75681 -11.55745 -10.92474 -10.38754 -9.56801 -9.03953 -8.43352 -8.36879 -6.49610 0.10673 0.60982 1.20842 1.31076 1.40807 1.78472 1.94312 2.20264 2.82174 2.90746 3.52575 3.68668 3.90279 3.97414 4.13345 4.26012 4.27477 4.49627 4.56549 4.69318 4.79985 4.80489 4.92156 5.06166 5.24974 5.35140 5.44658 5.62889 5.68147 5.83610 6.01296 6.25640 6.36048 6.48317 6.54120 6.68833 7.16213 8.75564 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.038159 B = 0.006529 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.598201 B = 4287.583000 C = 4604.846489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.486 5.486 3 C 0.076 3.924 4 C -0.237 4.237 5 C -0.170 4.170 6 C 0.098 3.902 7 C -0.128 4.128 8 C -0.073 4.073 9 C -0.114 4.114 10 C 0.224 3.776 11 H 0.029 0.971 12 N -0.831 5.831 13 C -0.545 4.545 14 H 0.025 0.975 15 C 0.017 3.983 16 N -0.938 5.938 17 Si 0.940 3.060 18 H -0.244 1.244 19 H -0.290 1.290 20 H -0.255 1.255 21 C 0.097 3.903 22 F -0.156 7.156 23 H 0.084 0.916 24 H 0.110 0.890 25 H 0.087 0.913 26 H 0.219 0.781 27 H 0.148 0.852 28 H 0.161 0.839 29 H 0.150 0.850 30 H 0.342 0.658 31 H 0.318 0.682 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.715 9.437 7.930 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.169 5.169 3 C -0.049 4.049 4 C -0.262 4.262 5 C -0.176 4.176 6 C -0.009 4.009 7 C -0.148 4.148 8 C -0.092 4.092 9 C -0.116 4.116 10 C 0.114 3.886 11 H 0.047 0.953 12 N -0.365 5.365 13 C -0.584 4.584 14 H 0.044 0.956 15 C -0.182 4.182 16 N -0.577 5.577 17 Si 0.765 3.235 18 H -0.168 1.168 19 H -0.216 1.216 20 H -0.179 1.179 21 C 0.077 3.923 22 F -0.135 7.135 23 H 0.102 0.898 24 H 0.128 0.872 25 H 0.106 0.894 26 H 0.235 0.765 27 H 0.166 0.834 28 H 0.178 0.822 29 H 0.167 0.833 30 H 0.156 0.844 31 H 0.133 0.867 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.130 9.797 8.485 21.481 hybrid contribution 1.871 -0.772 -0.975 2.246 sum -15.260 9.025 7.510 19.254 Atomic orbital electron populations 1.22294 0.74004 1.05970 1.04466 1.44132 1.07525 1.03038 1.62202 1.22391 0.88981 0.92637 1.00902 1.21811 0.98171 0.91050 1.15175 1.19418 0.92394 0.95299 1.10455 1.18095 0.88772 0.89551 1.04516 1.20275 1.00559 0.88261 1.05742 1.20682 0.89570 1.00683 0.98315 1.19809 0.96936 0.91691 1.03209 1.17964 0.90981 0.87337 0.92348 0.95272 1.59656 1.14635 1.05304 1.56894 1.21761 1.18674 1.23933 0.94051 0.95635 1.25921 0.96035 0.97997 0.98282 1.70048 1.27773 1.37793 1.22104 0.85924 0.77823 0.80102 0.79689 1.16835 1.21645 1.17895 1.17270 0.77244 0.92179 1.05649 1.91364 1.36856 1.91183 1.94072 0.89780 0.87156 0.89399 0.76451 0.83413 0.82197 0.83288 0.84421 0.86666 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 11.02 127.77 1.41 2.21 16 2 N -0.49 -10.95 3.18 -539.26 -1.72 -12.67 16 3 C 0.08 1.64 11.29 82.99 0.94 2.58 16 4 C -0.24 -7.33 11.08 23.51 0.26 -7.07 16 5 C -0.17 -6.66 6.36 -20.17 -0.13 -6.79 16 6 C 0.10 3.11 6.80 39.02 0.27 3.38 16 7 C -0.13 -3.89 9.95 22.37 0.22 -3.67 16 8 C -0.07 -2.72 9.22 22.29 0.21 -2.52 16 9 C -0.11 -5.29 5.03 -19.82 -0.10 -5.39 16 10 C 0.22 11.46 2.18 43.42 0.09 11.55 16 11 H 0.03 1.62 6.99 -2.39 -0.02 1.60 16 12 N -0.83 -36.39 8.62 -174.96 -1.51 -37.90 16 13 C -0.54 -32.77 9.28 25.60 0.24 -32.53 16 14 H 0.03 1.73 7.98 -2.91 -0.02 1.71 16 15 C 0.02 1.00 5.47 84.66 0.46 1.46 16 16 N -0.94 -59.65 13.96 21.45 0.30 -59.35 16 17 Si 0.94 44.75 24.61 68.60 1.69 46.44 16 18 H -0.24 -10.36 7.01 99.48 0.70 -9.66 16 19 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.25 -11.89 6.54 99.48 0.65 -11.24 16 21 C 0.10 4.54 7.27 22.56 0.16 4.71 16 22 F -0.16 -7.99 16.65 44.97 0.75 -7.24 16 23 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.09 0.89 8.10 -2.39 -0.02 0.87 16 26 H 0.22 2.27 8.06 -2.91 -0.02 2.25 16 27 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 28 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.15 4.95 6.21 -2.91 -0.02 4.93 16 30 H 0.34 13.73 7.26 -89.69 -0.65 13.08 16 31 H 0.32 13.89 4.29 -89.70 -0.38 13.50 16 32 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -78.35 272.24 3.61 -74.75 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.06 Total: 28.04 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 4.03 Total: -32.08 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -2.92 Total: -109.91 kcal Atomic # 9 Polarization: -7.99 SS G_CDS: 0.75 Total: -7.24 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.69 Total: 46.44 kcal Total: -78.35 3.61 -74.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026738.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.977 kcal (2) G-P(sol) polarization free energy of solvation -78.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds