Wall clock time and date at job start Mon Mar 30 2020 06:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36887 * 125.05861 * 2 1 4 4 C 1.34219 * 109.91421 * 180.02562 * 3 2 1 5 5 C 1.46507 * 106.99306 * 0.02562 * 4 3 2 6 6 C 1.37699 * 125.06614 * 180.02562 * 2 1 3 7 7 C 1.39130 * 133.40638 * 359.97438 * 6 2 1 8 8 C 1.37747 * 119.96337 * 180.02562 * 7 6 2 9 9 C 1.38787 * 120.69597 * 359.97075 * 8 7 6 10 10 C 1.50697 * 119.82614 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47202 * 145.00296 * 10 9 8 12 12 N 1.46896 * 109.46957 * 25.00539 * 10 9 8 13 13 C 1.50697 * 109.47339 * 265.00568 * 10 9 8 14 14 H 1.08000 * 120.00058 * 5.65769 * 13 10 9 15 15 C 1.37877 * 120.00286 * 185.65901 * 13 10 9 16 16 N 1.31509 * 120.00472 * 195.01209 * 15 13 10 17 17 Si 1.86804 * 119.99794 * 15.00807 * 15 13 10 18 18 H 1.48502 * 109.47048 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.46871 * 300.00045 * 17 15 13 20 20 H 1.48498 * 109.46994 * 59.99997 * 17 15 13 21 21 C 1.37871 * 120.35318 * 0.30471 * 9 8 7 22 22 F 1.35097 * 120.19926 * 179.71810 * 21 9 8 23 23 H 1.08999 * 109.47026 * 269.97343 * 1 2 3 24 24 H 1.09004 * 109.46896 * 29.97020 * 1 2 3 25 25 H 1.08997 * 109.46676 * 149.97445 * 1 2 3 26 26 H 1.07992 * 125.04562 * 0.02783 * 3 2 1 27 27 H 1.08003 * 126.50201 * 180.02562 * 4 3 2 28 28 H 1.07997 * 120.01586 * 359.97438 * 7 6 2 29 29 H 1.07999 * 119.64934 * 180.02562 * 8 7 6 30 30 H 1.00902 * 111.00351 * 173.52113 * 12 10 9 31 31 H 1.00902 * 111.00162 * 297.48265 * 12 10 9 32 32 H 0.97005 * 119.99955 * 354.37835 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2514 1.1205 0.0000 4 6 3.5469 0.7699 -0.0006 5 6 3.5942 -0.6945 -0.0016 6 6 2.2562 -1.1270 -0.0005 7 6 1.9781 -2.4903 -0.0007 8 6 3.0100 -3.4029 -0.0007 9 6 4.3313 -2.9783 -0.0012 10 6 5.4448 -3.9937 -0.0017 11 1 6.2803 -3.6164 -0.5914 12 7 4.9606 -5.2509 -0.5872 13 6 5.8999 -4.2410 1.4134 14 1 5.3711 -3.7863 2.2380 15 6 6.9915 -5.0477 1.6555 16 7 7.2156 -5.5045 2.8682 17 14 8.1523 -5.4919 0.2609 18 1 9.2372 -6.3638 0.7786 19 1 7.4009 -6.2131 -0.7977 20 1 8.7410 -4.2525 -0.3069 21 6 4.6306 -1.6325 0.0047 22 9 5.9179 -1.2227 0.0100 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8903 -0.5134 25 1 -0.3632 -0.8898 -0.5142 26 1 1.8839 2.1360 0.0004 27 1 4.3939 1.4400 -0.0003 28 1 0.9539 -2.8328 0.0001 29 1 2.7883 -4.4599 -0.0012 30 1 5.7143 -5.9130 -0.6961 31 1 4.2124 -5.6424 -0.0349 32 1 6.6616 -5.2093 3.6078 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261026741.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:32 Heat of formation + Delta-G solvation = 19.532248 kcal Electronic energy + Delta-G solvation = -17715.855006 eV Core-core repulsion = 14784.417241 eV Total energy + Delta-G solvation = -2931.437765 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.97952 -40.91975 -37.18630 -34.27258 -32.59434 -31.70096 -29.39229 -28.29473 -26.53040 -25.35329 -22.52950 -22.00410 -19.96616 -19.61493 -17.70500 -17.24793 -16.49373 -15.63900 -15.34613 -14.83445 -14.56975 -14.51716 -13.85060 -13.36859 -13.18754 -12.91761 -12.57226 -12.50343 -12.33394 -12.17980 -12.09004 -11.59423 -10.85728 -10.68367 -10.49758 -10.13796 -9.99797 -9.24843 -9.10115 -8.45775 -7.82012 -7.56307 -7.10906 -6.42023 -4.18693 1.46376 2.05630 2.92595 2.94069 3.29680 3.42455 3.56958 4.27549 4.39971 4.69101 4.82447 5.02112 5.08367 5.13930 5.22442 5.29881 5.48373 5.59465 5.70969 5.85332 6.13734 6.17408 6.26327 6.54810 6.74559 6.92450 6.97785 7.08781 7.31865 7.49858 7.61413 7.83004 8.24902 8.40491 8.52553 8.86524 9.53415 10.85961 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.037068 B = 0.006583 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.182187 B = 4252.488385 C = 4551.411532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.493 5.493 3 C 0.037 3.963 4 C -0.192 4.192 5 C -0.145 4.145 6 C 0.107 3.893 7 C -0.153 4.153 8 C -0.053 4.053 9 C -0.081 4.081 10 C 0.217 3.783 11 H 0.046 0.954 12 N -0.856 5.856 13 C -0.620 4.620 14 H 0.056 0.944 15 C 0.031 3.969 16 N -0.901 5.901 17 Si 1.047 2.953 18 H -0.284 1.284 19 H -0.274 1.274 20 H -0.280 1.280 21 C 0.135 3.865 22 F -0.134 7.134 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.165 0.835 27 H 0.144 0.856 28 H 0.116 0.884 29 H 0.134 0.866 30 H 0.331 0.669 31 H 0.326 0.674 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.631 9.777 -6.795 17.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.179 5.179 3 C -0.087 4.087 4 C -0.218 4.218 5 C -0.150 4.150 6 C 0.002 3.998 7 C -0.174 4.174 8 C -0.073 4.073 9 C -0.084 4.084 10 C 0.107 3.893 11 H 0.064 0.936 12 N -0.388 5.388 13 C -0.659 4.659 14 H 0.075 0.925 15 C -0.175 4.175 16 N -0.534 5.534 17 Si 0.875 3.125 18 H -0.209 1.209 19 H -0.201 1.201 20 H -0.206 1.206 21 C 0.115 3.885 22 F -0.113 7.113 23 H 0.083 0.917 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.182 0.818 27 H 0.162 0.838 28 H 0.134 0.866 29 H 0.152 0.848 30 H 0.146 0.854 31 H 0.138 0.862 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.779 9.366 -7.797 16.949 hybrid contribution -0.879 0.773 1.513 1.913 sum -12.658 10.139 -6.284 17.393 Atomic orbital electron populations 1.21842 0.77593 1.03773 1.02605 1.43698 1.05485 1.04251 1.64426 1.21628 0.90321 0.90819 1.05916 1.21560 0.95976 0.92505 1.11720 1.19008 0.91937 0.93618 1.10480 1.17870 0.88959 0.88157 1.04803 1.19918 0.99277 0.88875 1.09322 1.20515 0.90498 0.99286 0.96982 1.19922 0.96318 0.92199 0.99929 1.18117 0.90127 0.86086 0.94971 0.93615 1.59801 1.14897 1.08247 1.55854 1.22592 1.16515 1.34877 0.91958 0.92549 1.25837 0.96831 0.93251 1.01615 1.70845 1.43063 1.38774 1.00758 0.83974 0.76682 0.77081 0.74713 1.20941 1.20055 1.20574 1.16830 0.77229 0.91140 1.03321 1.91435 1.35269 1.90961 1.93595 0.91683 0.90310 0.90283 0.81785 0.83783 0.86617 0.84808 0.85386 0.86223 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 11.03 59.85 0.66 1.39 16 2 N -0.49 -6.72 3.18 -121.80 -0.39 -7.11 16 3 C 0.04 0.48 11.29 -16.71 -0.19 0.29 16 4 C -0.19 -3.07 11.08 -37.67 -0.42 -3.49 16 5 C -0.15 -2.84 6.36 -105.09 -0.67 -3.51 16 6 C 0.11 1.85 6.80 -84.00 -0.57 1.28 16 7 C -0.15 -2.57 9.95 -39.43 -0.39 -2.97 16 8 C -0.05 -1.03 9.24 -39.56 -0.37 -1.40 16 9 C -0.08 -1.84 5.00 -104.55 -0.52 -2.36 16 10 C 0.22 5.35 2.24 -70.02 -0.16 5.19 16 11 H 0.05 1.19 6.48 -51.93 -0.34 0.85 16 12 N -0.86 -18.89 8.73 -6.66 -0.06 -18.95 16 13 C -0.62 -17.59 9.00 -34.44 -0.31 -17.89 16 14 H 0.06 1.76 7.99 -52.49 -0.42 1.34 16 15 C 0.03 0.88 5.44 -17.82 -0.10 0.79 16 16 N -0.90 -27.56 13.69 55.43 0.76 -26.80 16 17 Si 1.05 25.13 26.48 -169.99 -4.50 20.63 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -5.91 5.54 56.52 0.31 -5.60 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.14 3.03 7.28 -39.14 -0.28 2.75 16 22 F -0.13 -3.17 16.56 2.25 0.04 -3.13 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 26 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.14 2.05 8.06 -52.48 -0.42 1.63 16 28 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.13 2.39 6.32 -52.49 -0.33 2.06 16 30 H 0.33 7.35 5.53 -39.29 -0.22 7.13 16 31 H 0.33 6.80 7.30 -39.29 -0.29 6.51 16 32 H 0.27 8.25 8.73 -40.82 -0.36 7.89 16 LS Contribution 274.00 15.07 4.13 4.13 Total: -1.00 -32.82 274.00 -6.70 -39.52 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -3.37 Total: 11.65 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -3.31 Total: -19.94 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.31 Total: -52.86 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.13 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -4.50 Total: 20.63 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.82 -6.70 -39.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026741.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.052 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds