Wall clock time and date at job start Mon Mar 30 2020 06:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36887 * 125.05861 * 2 1 4 4 C 1.34219 * 109.91421 * 180.02562 * 3 2 1 5 5 C 1.46507 * 106.99306 * 0.02562 * 4 3 2 6 6 C 1.37699 * 125.06614 * 180.02562 * 2 1 3 7 7 C 1.39130 * 133.40638 * 359.97438 * 6 2 1 8 8 C 1.37747 * 119.96337 * 180.02562 * 7 6 2 9 9 C 1.38787 * 120.69597 * 359.97075 * 8 7 6 10 10 C 1.50697 * 119.82614 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47202 * 145.00296 * 10 9 8 12 12 N 1.46896 * 109.46957 * 25.00539 * 10 9 8 13 13 C 1.50697 * 109.47339 * 265.00568 * 10 9 8 14 14 H 1.08000 * 120.00058 * 5.65769 * 13 10 9 15 15 C 1.37877 * 120.00286 * 185.65901 * 13 10 9 16 16 N 1.31509 * 120.00472 * 195.01209 * 15 13 10 17 17 Si 1.86804 * 119.99794 * 15.00807 * 15 13 10 18 18 H 1.48502 * 109.47048 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.46871 * 300.00045 * 17 15 13 20 20 H 1.48498 * 109.46994 * 59.99997 * 17 15 13 21 21 C 1.37871 * 120.35318 * 0.30471 * 9 8 7 22 22 F 1.35097 * 120.19926 * 179.71810 * 21 9 8 23 23 H 1.08999 * 109.47026 * 269.97343 * 1 2 3 24 24 H 1.09004 * 109.46896 * 29.97020 * 1 2 3 25 25 H 1.08997 * 109.46676 * 149.97445 * 1 2 3 26 26 H 1.07992 * 125.04562 * 0.02783 * 3 2 1 27 27 H 1.08003 * 126.50201 * 180.02562 * 4 3 2 28 28 H 1.07997 * 120.01586 * 359.97438 * 7 6 2 29 29 H 1.07999 * 119.64934 * 180.02562 * 8 7 6 30 30 H 1.00902 * 111.00351 * 173.52113 * 12 10 9 31 31 H 1.00902 * 111.00162 * 297.48265 * 12 10 9 32 32 H 0.97005 * 119.99955 * 354.37835 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2514 1.1205 0.0000 4 6 3.5469 0.7699 -0.0006 5 6 3.5942 -0.6945 -0.0016 6 6 2.2562 -1.1270 -0.0005 7 6 1.9781 -2.4903 -0.0007 8 6 3.0100 -3.4029 -0.0007 9 6 4.3313 -2.9783 -0.0012 10 6 5.4448 -3.9937 -0.0017 11 1 6.2803 -3.6164 -0.5914 12 7 4.9606 -5.2509 -0.5872 13 6 5.8999 -4.2410 1.4134 14 1 5.3711 -3.7863 2.2380 15 6 6.9915 -5.0477 1.6555 16 7 7.2156 -5.5045 2.8682 17 14 8.1523 -5.4919 0.2609 18 1 9.2372 -6.3638 0.7786 19 1 7.4009 -6.2131 -0.7977 20 1 8.7410 -4.2525 -0.3069 21 6 4.6306 -1.6325 0.0047 22 9 5.9179 -1.2227 0.0100 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8903 -0.5134 25 1 -0.3632 -0.8898 -0.5142 26 1 1.8839 2.1360 0.0004 27 1 4.3939 1.4400 -0.0003 28 1 0.9539 -2.8328 0.0001 29 1 2.7883 -4.4599 -0.0012 30 1 5.7143 -5.9130 -0.6961 31 1 4.2124 -5.6424 -0.0349 32 1 6.6616 -5.2093 3.6078 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261026741.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:32 Heat of formation + Delta-G solvation = -3.429657 kcal Electronic energy + Delta-G solvation = -17716.850709 eV Core-core repulsion = 14784.417241 eV Total energy + Delta-G solvation = -2932.433468 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.69529 -42.14535 -38.74095 -36.06822 -33.92390 -33.58177 -30.85294 -29.63851 -28.01486 -26.90378 -24.16135 -23.46379 -21.31805 -21.16632 -19.88538 -18.52058 -18.00684 -17.29931 -16.67908 -16.17310 -15.94358 -15.92461 -15.68377 -14.99375 -14.91956 -14.37174 -14.19712 -14.08575 -13.56312 -13.45898 -13.42153 -12.99394 -12.55375 -12.16760 -12.04684 -11.99420 -11.76836 -11.34425 -10.67962 -10.42701 -9.57337 -9.19312 -8.74864 -8.37574 -6.51192 0.06479 0.58066 1.36230 1.47768 1.67088 1.74995 1.90829 2.36473 2.78684 2.98135 3.48679 3.69275 3.88815 3.97700 4.12375 4.22281 4.32385 4.46014 4.52769 4.65576 4.76808 4.77410 4.89480 5.03853 5.21113 5.42737 5.58439 5.64592 5.70794 5.80992 5.91049 6.22440 6.37213 6.44943 6.49866 6.80495 7.29225 8.52147 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.037068 B = 0.006583 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.182187 B = 4252.488385 C = 4551.411532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.486 5.486 3 C 0.077 3.923 4 C -0.238 4.238 5 C -0.169 4.169 6 C 0.096 3.904 7 C -0.129 4.129 8 C -0.075 4.075 9 C -0.112 4.112 10 C 0.224 3.776 11 H 0.030 0.970 12 N -0.839 5.839 13 C -0.619 4.619 14 H 0.010 0.990 15 C -0.017 4.017 16 N -0.928 5.928 17 Si 1.086 2.914 18 H -0.282 1.282 19 H -0.233 1.233 20 H -0.277 1.277 21 C 0.092 3.908 22 F -0.156 7.156 23 H 0.079 0.921 24 H 0.113 0.887 25 H 0.089 0.911 26 H 0.220 0.780 27 H 0.149 0.851 28 H 0.158 0.842 29 H 0.144 0.856 30 H 0.331 0.669 31 H 0.334 0.666 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.687 11.054 -8.478 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.169 5.169 3 C -0.048 4.048 4 C -0.262 4.262 5 C -0.174 4.174 6 C -0.011 4.011 7 C -0.149 4.149 8 C -0.094 4.094 9 C -0.114 4.114 10 C 0.114 3.886 11 H 0.048 0.952 12 N -0.370 5.370 13 C -0.658 4.658 14 H 0.029 0.971 15 C -0.216 4.216 16 N -0.564 5.564 17 Si 0.907 3.093 18 H -0.207 1.207 19 H -0.157 1.157 20 H -0.203 1.203 21 C 0.072 3.928 22 F -0.135 7.135 23 H 0.097 0.903 24 H 0.132 0.868 25 H 0.108 0.892 26 H 0.236 0.764 27 H 0.167 0.833 28 H 0.176 0.824 29 H 0.162 0.838 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.903 10.644 -9.484 20.624 hybrid contribution -0.149 0.578 2.095 2.178 sum -15.052 11.223 -7.389 20.177 Atomic orbital electron populations 1.22296 0.74013 1.06146 1.04291 1.44136 1.07527 1.03031 1.62205 1.22414 0.88984 0.92630 1.00818 1.21815 0.98193 0.90972 1.15237 1.19426 0.92349 0.95342 1.10317 1.18070 0.88863 0.89482 1.04716 1.20265 1.00472 0.88390 1.05784 1.20638 0.89819 1.00431 0.98550 1.19914 0.97146 0.91885 1.02482 1.17856 0.90922 0.87759 0.92075 0.95243 1.59712 1.14807 1.07337 1.55169 1.22720 1.16060 1.34055 0.92989 0.97110 1.27261 0.98171 0.93137 1.03012 1.70976 1.43540 1.40563 1.01277 0.83515 0.75243 0.77485 0.73072 1.20734 1.15697 1.20311 1.17264 0.77250 0.92167 1.06126 1.91355 1.36808 1.91173 1.94148 0.90254 0.86839 0.89247 0.76363 0.83295 0.82397 0.83837 0.85373 0.85316 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 11.03 127.77 1.41 2.24 16 2 N -0.49 -11.08 3.18 -539.26 -1.72 -12.80 16 3 C 0.08 1.66 11.29 82.99 0.94 2.59 16 4 C -0.24 -7.31 11.08 23.51 0.26 -7.05 16 5 C -0.17 -6.63 6.36 -20.17 -0.13 -6.76 16 6 C 0.10 3.10 6.80 39.02 0.27 3.36 16 7 C -0.13 -4.04 9.95 22.37 0.22 -3.81 16 8 C -0.07 -2.88 9.24 22.28 0.21 -2.68 16 9 C -0.11 -5.24 5.00 -19.82 -0.10 -5.34 16 10 C 0.22 11.43 2.24 43.42 0.10 11.53 16 11 H 0.03 1.59 6.48 -2.39 -0.02 1.58 16 12 N -0.84 -36.81 8.73 -174.97 -1.53 -38.34 16 13 C -0.62 -36.84 9.00 25.60 0.23 -36.61 16 14 H 0.01 0.71 7.99 -2.91 -0.02 0.68 16 15 C -0.02 -0.98 5.44 84.66 0.46 -0.52 16 16 N -0.93 -59.05 13.69 21.45 0.29 -58.76 16 17 Si 1.09 51.21 26.48 68.60 1.82 53.02 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.23 -9.37 5.54 99.48 0.55 -8.82 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 C 0.09 4.33 7.28 22.56 0.16 4.49 16 22 F -0.16 -7.90 16.56 44.97 0.74 -7.16 16 23 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.09 0.90 8.10 -2.39 -0.02 0.88 16 26 H 0.22 2.26 8.06 -2.91 -0.02 2.23 16 27 H 0.15 4.23 8.06 -2.91 -0.02 4.20 16 28 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 29 H 0.14 5.04 6.32 -2.91 -0.02 5.02 16 30 H 0.33 14.32 5.53 -89.69 -0.50 13.82 16 31 H 0.33 13.86 7.30 -89.69 -0.65 13.20 16 32 H 0.25 16.37 8.73 -92.70 -0.81 15.56 16 Total: -1.00 -77.50 274.00 3.45 -74.04 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.18 Total: 28.54 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 4.02 Total: -38.55 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -2.95 Total: -109.90 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 0.74 Total: -7.16 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 1.82 Total: 53.02 kcal Total: -77.50 3.45 -74.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026741.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.615 kcal (2) G-P(sol) polarization free energy of solvation -77.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds