Wall clock time and date at job start Mon Mar 30 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34251 * 126.49139 * 2 1 4 4 N 1.36792 * 109.92640 * 179.97438 * 3 2 1 5 5 H 0.97006 * 125.07255 * 179.97438 * 4 3 2 6 6 C 1.37780 * 109.86019 * 359.97438 * 4 3 2 7 7 C 1.40619 * 107.15789 * 359.72620 * 6 4 3 8 8 C 1.39666 * 119.94038 * 179.65054 * 7 6 4 9 9 C 1.36639 * 119.80678 * 0.60380 * 8 7 6 10 10 C 1.50700 * 119.72708 * 179.72151 * 9 8 7 11 11 H 1.09007 * 109.47040 * 339.97210 * 10 9 8 12 12 N 1.46897 * 109.46950 * 219.97840 * 10 9 8 13 13 C 1.50694 * 109.47376 * 99.97104 * 10 9 8 14 14 H 1.08000 * 119.99780 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99999 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99784 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 120.00065 * 180.02562 * 15 13 10 18 18 H 1.48504 * 109.46862 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47266 * 120.00110 * 17 15 13 20 20 H 1.48502 * 109.46995 * 240.00590 * 17 15 13 21 21 C 1.38791 * 120.54632 * 359.69527 * 9 8 7 22 22 C 1.37984 * 120.63694 * 0.02562 * 21 9 8 23 23 F 1.35101 * 120.13068 * 180.02562 * 22 21 9 24 24 H 1.09002 * 109.47152 * 90.02735 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02835 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02816 * 1 2 3 27 27 H 1.07998 * 125.03731 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.09561 * 180.29896 * 8 7 6 29 29 H 1.00903 * 110.99988 * 176.04566 * 12 10 9 30 30 H 1.00902 * 111.00016 * 299.99325 * 12 10 9 31 31 H 0.97004 * 119.99794 * 179.97438 * 16 15 13 32 32 H 1.08009 * 119.68378 * 179.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3054 1.0793 0.0000 4 7 3.6166 0.6893 0.0006 5 1 4.3772 1.2914 0.0003 6 6 3.6958 -0.6862 0.0015 7 6 2.3782 -1.1776 0.0080 8 6 2.1480 -2.5551 0.0030 9 6 3.2054 -3.4205 0.0043 10 6 2.9549 -4.9065 0.0053 11 1 1.9421 -5.1040 0.3568 12 7 3.9194 -5.5651 0.8963 13 6 3.1149 -5.4439 -1.3935 14 1 3.3726 -4.7761 -2.2022 15 6 2.9332 -6.7881 -1.6406 16 7 2.6198 -7.6013 -0.6556 17 14 3.1322 -7.4543 -3.3743 18 1 3.4847 -6.3430 -4.2942 19 1 4.2127 -8.4728 -3.3923 20 1 1.8578 -8.0767 -3.8147 21 6 4.5083 -2.9422 0.0043 22 6 4.7593 -1.5854 0.0034 23 9 6.0316 -1.1311 0.0028 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 0.8903 0.5134 26 1 -0.3633 -0.8898 0.5143 27 1 1.9633 2.1037 -0.0004 28 1 1.1371 -2.9352 0.0031 29 1 3.7318 -6.5542 0.9645 30 1 4.8665 -5.3969 0.5915 31 1 2.4916 -8.5469 -0.8295 32 1 5.3338 -3.6388 0.0058 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031002.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:15 Heat of formation + Delta-G solvation = -19.084347 kcal Electronic energy + Delta-G solvation = -17481.125557 eV Core-core repulsion = 14548.013251 eV Total energy + Delta-G solvation = -2933.112306 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.85921 -42.09075 -38.74301 -35.83217 -33.73374 -33.19010 -30.71722 -29.94355 -27.88394 -27.28417 -24.56368 -23.63813 -21.76181 -20.16884 -19.10908 -18.54364 -17.86890 -17.14414 -16.74512 -16.64516 -16.23519 -15.73753 -15.19845 -14.93012 -14.77473 -14.34567 -13.62590 -13.55564 -13.51229 -13.34884 -13.15108 -12.80438 -12.73940 -12.57663 -12.27468 -12.04122 -11.76073 -11.52508 -10.70668 -10.29155 -9.27527 -9.07033 -8.43140 -8.08412 -6.37104 0.07441 0.62341 1.36276 1.39600 1.50718 1.74391 2.17771 2.36899 2.87132 3.05981 3.27952 3.76807 3.97355 4.03967 4.28567 4.46588 4.58598 4.64556 4.81866 4.85899 4.99328 5.03560 5.19789 5.30571 5.35968 5.40800 5.65417 5.69842 5.85294 5.95701 6.10981 6.21664 6.64271 6.70406 6.92732 7.11778 7.39060 8.83173 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.025138 B = 0.006528 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.593169 B = 4288.505610 C = 4743.492973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.203 4.203 3 C 0.075 3.925 4 N -0.582 5.582 5 H 0.429 0.571 6 C 0.036 3.964 7 C -0.091 4.091 8 C -0.099 4.099 9 C -0.048 4.048 10 C 0.249 3.751 11 H 0.018 0.982 12 N -0.842 5.842 13 C -0.558 4.558 14 H 0.045 0.955 15 C 0.024 3.976 16 N -0.915 5.915 17 Si 0.958 3.042 18 H -0.275 1.275 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.126 4.126 22 C 0.071 3.929 23 F -0.148 7.148 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.051 0.949 27 H 0.221 0.779 28 H 0.120 0.880 29 H 0.346 0.654 30 H 0.317 0.683 31 H 0.268 0.732 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 16.832 0.845 16.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.210 4.210 3 C -0.051 4.051 4 N -0.187 5.187 5 H 0.269 0.731 6 C -0.072 4.072 7 C -0.096 4.096 8 C -0.119 4.119 9 C -0.050 4.050 10 C 0.138 3.862 11 H 0.036 0.964 12 N -0.371 5.371 13 C -0.597 4.597 14 H 0.063 0.937 15 C -0.176 4.176 16 N -0.555 5.555 17 Si 0.783 3.217 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.203 1.203 21 C -0.146 4.146 22 C 0.049 3.951 23 F -0.127 7.127 24 H 0.084 0.916 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.237 0.763 28 H 0.138 0.862 29 H 0.161 0.839 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.988 17.245 1.475 17.336 hybrid contribution 1.089 -1.279 -1.708 2.396 sum 0.102 15.966 -0.233 15.968 Atomic orbital electron populations 1.20111 0.87774 1.02937 1.02146 1.20640 0.96741 0.89810 1.13766 1.22309 0.80818 1.00538 1.01478 1.41622 1.08934 1.03147 1.64962 0.73135 1.18053 0.94236 0.85246 1.09636 1.19274 0.92123 0.93415 1.04764 1.20209 0.98909 0.91094 1.01643 1.19547 0.91998 0.96615 0.96867 1.17764 0.92384 0.85891 0.90120 0.96397 1.59501 1.05387 1.18769 1.53477 1.22054 1.48633 0.93590 0.95463 0.93657 1.25711 0.93947 0.97118 1.00850 1.69844 1.48114 1.04747 1.32747 0.85518 0.77906 0.78084 0.80166 1.19927 1.20241 1.20305 1.20606 0.98257 0.92248 1.03467 1.16625 0.76641 0.91212 1.10578 1.91409 1.36941 1.89537 1.94789 0.91562 0.89176 0.92948 0.76264 0.86219 0.83902 0.87274 0.92237 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 10.41 71.24 0.74 -0.76 16 2 C -0.20 -5.38 6.32 -18.62 -0.12 -5.49 16 3 C 0.08 1.49 11.73 83.01 0.97 2.46 16 4 N -0.58 -13.83 6.07 -187.49 -1.14 -14.97 16 5 H 0.43 7.41 8.96 -92.70 -0.83 6.58 16 6 C 0.04 1.22 7.26 39.04 0.28 1.50 16 7 C -0.09 -3.24 6.35 -20.20 -0.13 -3.37 16 8 C -0.10 -4.13 9.65 22.24 0.21 -3.91 16 9 C -0.05 -2.21 4.86 -20.11 -0.10 -2.31 16 10 C 0.25 12.88 2.93 43.42 0.13 13.00 16 11 H 0.02 1.03 7.97 -2.38 -0.02 1.01 16 12 N -0.84 -41.64 9.01 -174.96 -1.58 -43.22 16 13 C -0.56 -30.78 8.70 25.60 0.22 -30.56 16 14 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 15 C 0.02 1.30 5.38 84.66 0.46 1.76 16 16 N -0.91 -50.95 11.54 21.45 0.25 -50.70 16 17 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 C -0.13 -5.31 9.24 22.34 0.21 -5.10 16 22 C 0.07 2.68 7.32 22.46 0.16 2.84 16 23 F -0.15 -5.15 17.27 44.97 0.78 -4.38 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.22 1.95 8.06 -2.91 -0.02 1.93 16 28 H 0.12 4.86 8.01 -2.91 -0.02 4.83 16 29 H 0.35 18.19 7.08 -89.69 -0.63 17.55 16 30 H 0.32 14.85 7.31 -89.69 -0.66 14.20 16 31 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 32 H 0.13 5.39 6.62 -2.91 -0.02 5.37 16 Total: -1.00 -63.93 279.40 2.44 -61.48 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: -0.94 Total: 36.33 kcal Atomic # 6 Polarization: -32.98 SS G_CDS: 3.05 Total: -29.93 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -2.47 Total: -108.89 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.78 Total: -4.38 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -63.93 2.44 -61.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031002.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.397 kcal (2) G-P(sol) polarization free energy of solvation -63.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds