Wall clock time and date at job start Mon Mar 30 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34251 * 126.49139 * 2 1 4 4 N 1.36792 * 109.92640 * 179.97438 * 3 2 1 5 5 H 0.97006 * 125.07255 * 179.97438 * 4 3 2 6 6 C 1.37780 * 109.86019 * 359.97438 * 4 3 2 7 7 C 1.40619 * 107.15789 * 359.72620 * 6 4 3 8 8 C 1.39666 * 119.94038 * 179.65054 * 7 6 4 9 9 C 1.36639 * 119.80678 * 0.60380 * 8 7 6 10 10 C 1.50700 * 119.72708 * 179.72151 * 9 8 7 11 11 H 1.09006 * 109.47110 * 19.97022 * 10 9 8 12 12 N 1.46892 * 109.47190 * 139.97538 * 10 9 8 13 13 C 1.50707 * 109.46711 * 259.97752 * 10 9 8 14 14 H 1.08002 * 119.99930 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99836 * 180.02562 * 13 10 9 16 16 N 1.31519 * 119.99970 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00034 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47217 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47129 * 119.99760 * 17 15 13 20 20 H 1.48504 * 109.46763 * 239.99357 * 17 15 13 21 21 C 1.38791 * 120.54632 * 359.69527 * 9 8 7 22 22 C 1.37984 * 120.63694 * 0.02562 * 21 9 8 23 23 F 1.35101 * 120.13068 * 180.02562 * 22 21 9 24 24 H 1.09002 * 109.47152 * 90.02735 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02835 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02816 * 1 2 3 27 27 H 1.07998 * 125.03731 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.09561 * 180.29896 * 8 7 6 29 29 H 1.00901 * 111.00152 * 296.03746 * 12 10 9 30 30 H 1.00893 * 111.00327 * 60.00218 * 12 10 9 31 31 H 0.97000 * 119.99869 * 180.02562 * 16 15 13 32 32 H 1.08009 * 119.68378 * 179.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3054 1.0793 0.0000 4 7 3.6166 0.6893 0.0006 5 1 4.3772 1.2914 0.0003 6 6 3.6958 -0.6862 0.0015 7 6 2.3782 -1.1776 0.0080 8 6 2.1480 -2.5551 0.0030 9 6 3.2054 -3.4205 0.0043 10 6 2.9549 -4.9065 0.0053 11 1 1.9422 -5.1045 -0.3462 12 7 3.9198 -5.5663 -0.8842 13 6 3.1143 -5.4418 1.4050 14 1 3.3718 -4.7729 2.2129 15 6 2.9326 -6.7857 1.6540 16 7 2.6196 -7.6003 0.6700 17 14 3.1309 -7.4494 3.3888 18 1 3.4830 -6.3369 4.3072 19 1 1.8565 -8.0713 3.8296 20 1 4.2115 -8.4679 3.4085 21 6 4.5083 -2.9422 0.0043 22 6 4.7593 -1.5854 0.0034 23 9 6.0316 -1.1311 0.0028 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 0.8903 0.5134 26 1 -0.3633 -0.8898 0.5143 27 1 1.9633 2.1037 -0.0004 28 1 1.1371 -2.9352 0.0031 29 1 3.7900 -5.2720 -1.8406 30 1 4.8667 -5.3978 -0.5793 31 1 2.4914 -8.5457 0.8453 32 1 5.3338 -3.6388 0.0058 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261031004.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:18 Heat of formation + Delta-G solvation = 7.189570 kcal Electronic energy + Delta-G solvation = -17480.272972 eV Core-core repulsion = 14548.299988 eV Total energy + Delta-G solvation = -2931.972983 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.48957 -40.90696 -37.28602 -33.75226 -32.67298 -31.37416 -29.38298 -28.40918 -26.42272 -25.76199 -22.74251 -22.32869 -20.25669 -18.95997 -17.92628 -16.45756 -16.36548 -15.59582 -15.39519 -15.00804 -14.60347 -14.06979 -13.96414 -13.75953 -13.28158 -12.66065 -12.59956 -12.48005 -12.26098 -11.75390 -11.53092 -11.25122 -10.96280 -10.83358 -10.67758 -10.50170 -9.78162 -9.14990 -9.03594 -8.40959 -7.81687 -7.20533 -7.02255 -5.85441 -4.00143 1.39070 2.01110 2.81371 3.24470 3.34955 3.43304 3.47589 4.25287 4.53521 4.61877 4.89926 5.09905 5.34333 5.37271 5.40193 5.62844 5.82815 5.92424 5.94861 6.01067 6.20562 6.25136 6.36922 6.61853 6.76610 6.96808 7.00828 7.13063 7.54807 7.58843 7.65912 7.93855 8.20656 8.65302 9.02695 9.17457 9.68557 11.18746 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.025037 B = 0.006537 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.063690 B = 4282.449809 C = 4734.117212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.175 4.175 3 C 0.043 3.957 4 N -0.595 5.595 5 H 0.413 0.587 6 C 0.047 3.953 7 C -0.076 4.076 8 C -0.084 4.084 9 C -0.074 4.074 10 C 0.257 3.743 11 H 0.050 0.950 12 N -0.810 5.810 13 C -0.530 4.530 14 H 0.054 0.946 15 C 0.084 3.916 16 N -0.847 5.847 17 Si 0.883 3.117 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.119 4.119 22 C 0.070 3.930 23 F -0.153 7.153 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.166 0.834 28 H 0.125 0.875 29 H 0.299 0.701 30 H 0.317 0.683 31 H 0.255 0.745 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 15.601 -2.646 15.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.183 4.183 3 C -0.083 4.083 4 N -0.198 5.198 5 H 0.249 0.751 6 C -0.060 4.060 7 C -0.081 4.081 8 C -0.104 4.104 9 C -0.078 4.078 10 C 0.148 3.852 11 H 0.068 0.932 12 N -0.335 5.335 13 C -0.569 4.569 14 H 0.073 0.927 15 C -0.123 4.123 16 N -0.482 5.482 17 Si 0.711 3.289 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.139 4.139 22 C 0.049 3.951 23 F -0.132 7.132 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.183 0.817 28 H 0.143 0.857 29 H 0.109 0.891 30 H 0.130 0.870 31 H 0.065 0.935 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.966 14.806 -2.478 15.043 hybrid contribution 1.221 1.035 0.857 1.816 sum 0.256 15.841 -1.622 15.926 Atomic orbital electron populations 1.20074 0.89548 1.02163 1.01489 1.20264 0.95264 0.90755 1.12009 1.21492 0.82244 0.98842 1.05726 1.41504 1.07415 1.04610 1.66300 0.75113 1.18047 0.94976 0.83364 1.09563 1.19010 0.90530 0.93501 1.05060 1.20267 0.99699 0.89732 1.00695 1.21149 0.90754 1.01118 0.94770 1.18202 0.93552 0.79814 0.93666 0.93226 1.59197 1.06545 1.64964 1.02839 1.20888 1.50990 0.93192 0.91807 0.92727 1.24941 0.94287 0.96991 0.96062 1.70115 1.44474 1.03381 1.30209 0.86708 0.77662 0.79032 0.85532 1.19891 1.21070 1.21059 1.20768 0.99021 0.91485 1.02621 1.16702 0.76064 0.91472 1.10884 1.91408 1.37236 1.89735 1.94842 0.92063 0.92268 0.91512 0.81670 0.85733 0.89073 0.87043 0.93503 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.41 36.01 0.37 -0.48 16 2 C -0.18 -2.51 6.32 -102.71 -0.65 -3.15 16 3 C 0.04 0.52 11.73 -16.74 -0.20 0.32 16 4 N -0.59 -7.95 6.07 -10.61 -0.06 -8.02 16 5 H 0.41 4.30 8.96 -40.82 -0.37 3.93 16 6 C 0.05 0.81 7.26 -83.91 -0.61 0.20 16 7 C -0.08 -1.35 6.35 -105.15 -0.67 -2.02 16 8 C -0.08 -1.64 9.65 -39.63 -0.38 -2.02 16 9 C -0.07 -1.56 4.85 -105.00 -0.51 -2.07 16 10 C 0.26 6.25 2.84 -70.02 -0.20 6.05 16 11 H 0.05 1.31 7.97 -51.93 -0.41 0.90 16 12 N -0.81 -18.72 8.36 -6.65 -0.06 -18.77 16 13 C -0.53 -14.41 8.70 -34.44 -0.30 -14.71 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.08 2.32 5.39 -17.82 -0.10 2.23 16 16 N -0.85 -24.45 12.77 55.43 0.71 -23.74 16 17 Si 0.88 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 C -0.12 -2.34 9.23 -39.47 -0.36 -2.71 16 22 C 0.07 1.29 7.32 -39.29 -0.29 1.01 16 23 F -0.15 -2.68 17.27 2.25 0.04 -2.64 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 28 H 0.12 2.31 8.01 -52.49 -0.42 1.89 16 29 H 0.30 6.19 9.06 -39.29 -0.36 5.83 16 30 H 0.32 6.99 7.31 -39.30 -0.29 6.70 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.13 2.57 6.63 -52.48 -0.35 2.22 16 LS Contribution 281.86 15.07 4.25 4.25 Total: -1.00 -30.74 281.86 -7.45 -38.20 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -3.42 Total: 11.78 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -3.89 Total: -17.36 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.59 Total: -50.53 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.74 -7.45 -38.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031004.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.387 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds