Wall clock time and date at job start Mon Mar 30 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34251 * 126.49139 * 2 1 4 4 N 1.36792 * 109.92640 * 179.97438 * 3 2 1 5 5 H 0.97006 * 125.07255 * 179.97438 * 4 3 2 6 6 C 1.37780 * 109.86019 * 359.97438 * 4 3 2 7 7 C 1.40619 * 107.15789 * 359.72620 * 6 4 3 8 8 C 1.39666 * 119.94038 * 179.65054 * 7 6 4 9 9 C 1.36639 * 119.80678 * 0.60380 * 8 7 6 10 10 C 1.50700 * 119.72708 * 179.72151 * 9 8 7 11 11 H 1.09006 * 109.47110 * 19.97022 * 10 9 8 12 12 N 1.46892 * 109.47190 * 139.97538 * 10 9 8 13 13 C 1.50707 * 109.46711 * 259.97752 * 10 9 8 14 14 H 1.08002 * 119.99930 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99836 * 180.02562 * 13 10 9 16 16 N 1.31519 * 119.99970 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00034 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47217 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47129 * 119.99760 * 17 15 13 20 20 H 1.48504 * 109.46763 * 239.99357 * 17 15 13 21 21 C 1.38791 * 120.54632 * 359.69527 * 9 8 7 22 22 C 1.37984 * 120.63694 * 0.02562 * 21 9 8 23 23 F 1.35101 * 120.13068 * 180.02562 * 22 21 9 24 24 H 1.09002 * 109.47152 * 90.02735 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02835 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02816 * 1 2 3 27 27 H 1.07998 * 125.03731 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.09561 * 180.29896 * 8 7 6 29 29 H 1.00901 * 111.00152 * 296.03746 * 12 10 9 30 30 H 1.00893 * 111.00327 * 60.00218 * 12 10 9 31 31 H 0.97000 * 119.99869 * 180.02562 * 16 15 13 32 32 H 1.08009 * 119.68378 * 179.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3054 1.0793 0.0000 4 7 3.6166 0.6893 0.0006 5 1 4.3772 1.2914 0.0003 6 6 3.6958 -0.6862 0.0015 7 6 2.3782 -1.1776 0.0080 8 6 2.1480 -2.5551 0.0030 9 6 3.2054 -3.4205 0.0043 10 6 2.9549 -4.9065 0.0053 11 1 1.9422 -5.1045 -0.3462 12 7 3.9198 -5.5663 -0.8842 13 6 3.1143 -5.4418 1.4050 14 1 3.3718 -4.7729 2.2129 15 6 2.9326 -6.7857 1.6540 16 7 2.6196 -7.6003 0.6700 17 14 3.1309 -7.4494 3.3888 18 1 3.4830 -6.3369 4.3072 19 1 1.8565 -8.0713 3.8296 20 1 4.2115 -8.4679 3.4085 21 6 4.5083 -2.9422 0.0043 22 6 4.7593 -1.5854 0.0034 23 9 6.0316 -1.1311 0.0028 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 0.8903 0.5134 26 1 -0.3633 -0.8898 0.5143 27 1 1.9633 2.1037 -0.0004 28 1 1.1371 -2.9352 0.0031 29 1 3.7900 -5.2720 -1.8406 30 1 4.8667 -5.3978 -0.5793 31 1 2.4914 -8.5457 0.8453 32 1 5.3338 -3.6388 0.0058 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031004.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:18 Heat of formation + Delta-G solvation = -12.983753 kcal Electronic energy + Delta-G solvation = -17481.147753 eV Core-core repulsion = 14548.299988 eV Total energy + Delta-G solvation = -2932.847764 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.91261 -42.13631 -38.81085 -35.55555 -33.76775 -33.35887 -30.75598 -29.89092 -27.91332 -27.30861 -24.45631 -23.67577 -21.81193 -20.21766 -19.15108 -18.45791 -17.79702 -17.08751 -16.79624 -16.55333 -16.27621 -15.78541 -15.39885 -15.22525 -14.56014 -14.28405 -13.84759 -13.60416 -13.53844 -13.32605 -13.06288 -12.75014 -12.71708 -12.55837 -12.30188 -12.05789 -11.71987 -11.11743 -10.54046 -10.33402 -9.23982 -8.86436 -8.44467 -7.95979 -6.17771 0.01950 0.55759 1.42504 1.44969 1.55508 1.70324 2.13725 2.47068 2.81852 3.21914 3.27904 3.72601 3.94862 4.01993 4.26671 4.40734 4.48791 4.57679 4.73037 4.85149 4.95993 5.01576 5.12393 5.22542 5.36033 5.41548 5.67884 5.77094 5.82579 5.88221 6.12880 6.21501 6.65984 6.67319 7.11229 7.27995 7.54367 9.06857 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.025037 B = 0.006537 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.063690 B = 4282.449809 C = 4734.117212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.202 4.202 3 C 0.075 3.925 4 N -0.582 5.582 5 H 0.429 0.571 6 C 0.036 3.964 7 C -0.091 4.091 8 C -0.094 4.094 9 C -0.092 4.092 10 C 0.264 3.736 11 H 0.018 0.982 12 N -0.819 5.819 13 C -0.542 4.542 14 H 0.043 0.957 15 C 0.037 3.963 16 N -0.879 5.879 17 Si 0.946 3.054 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.281 1.281 21 C -0.135 4.135 22 C 0.074 3.926 23 F -0.148 7.148 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.050 0.950 27 H 0.221 0.779 28 H 0.121 0.879 29 H 0.312 0.688 30 H 0.322 0.678 31 H 0.256 0.744 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.850 18.493 -2.157 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.209 4.209 3 C -0.051 4.051 4 N -0.187 5.187 5 H 0.269 0.731 6 C -0.072 4.072 7 C -0.096 4.096 8 C -0.114 4.114 9 C -0.096 4.096 10 C 0.154 3.846 11 H 0.036 0.964 12 N -0.346 5.346 13 C -0.580 4.580 14 H 0.061 0.939 15 C -0.167 4.167 16 N -0.515 5.515 17 Si 0.772 3.228 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.207 1.207 21 C -0.156 4.156 22 C 0.052 3.948 23 F -0.127 7.127 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.237 0.763 28 H 0.139 0.861 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.065 0.935 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.096 17.729 -1.990 17.874 hybrid contribution 1.247 0.319 0.666 1.449 sum 0.150 18.048 -1.324 18.097 Atomic orbital electron populations 1.20117 0.87736 1.02878 1.02284 1.20659 0.96772 0.89837 1.13638 1.22323 0.80813 1.00582 1.01416 1.41639 1.08956 1.03185 1.64879 0.73126 1.18073 0.94275 0.85253 1.09593 1.19343 0.92060 0.93593 1.04614 1.20284 0.99073 0.90976 1.01031 1.20708 0.91990 0.99301 0.97597 1.17828 0.92111 0.82256 0.92388 0.96396 1.59020 1.06614 1.65422 1.03536 1.21149 1.50510 0.93347 0.93021 0.93882 1.25640 0.94113 0.97289 0.99619 1.70229 1.45647 1.03543 1.32083 0.85726 0.77728 0.78217 0.81155 1.19801 1.20429 1.20681 1.20635 0.98244 0.92381 1.04301 1.16636 0.76619 0.91253 1.10304 1.91415 1.36954 1.89555 1.94749 0.91222 0.89320 0.93059 0.76279 0.86145 0.87689 0.86495 0.93504 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 10.41 71.24 0.74 -0.72 16 2 C -0.20 -5.19 6.32 -18.62 -0.12 -5.31 16 3 C 0.08 1.44 11.73 83.01 0.97 2.41 16 4 N -0.58 -13.35 6.07 -187.49 -1.14 -14.49 16 5 H 0.43 7.11 8.96 -92.70 -0.83 6.28 16 6 C 0.04 1.17 7.26 39.04 0.28 1.46 16 7 C -0.09 -3.14 6.35 -20.20 -0.13 -3.27 16 8 C -0.09 -3.77 9.65 22.24 0.21 -3.55 16 9 C -0.09 -4.03 4.85 -20.11 -0.10 -4.13 16 10 C 0.26 13.44 2.84 43.43 0.12 13.56 16 11 H 0.02 1.02 7.97 -2.38 -0.02 1.00 16 12 N -0.82 -39.32 8.36 -174.95 -1.46 -40.79 16 13 C -0.54 -30.44 8.70 25.60 0.22 -30.22 16 14 H 0.04 2.46 7.74 -2.91 -0.02 2.44 16 15 C 0.04 2.09 5.39 84.65 0.46 2.55 16 16 N -0.88 -51.96 12.77 21.45 0.27 -51.69 16 17 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 18 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 C -0.14 -5.47 9.23 22.34 0.21 -5.26 16 22 C 0.07 2.67 7.32 22.46 0.16 2.83 16 23 F -0.15 -5.00 17.27 44.97 0.78 -4.22 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.22 1.82 8.06 -2.91 -0.02 1.80 16 28 H 0.12 4.73 8.01 -2.91 -0.02 4.71 16 29 H 0.31 13.42 9.06 -89.69 -0.81 12.60 16 30 H 0.32 14.74 7.31 -89.70 -0.66 14.08 16 31 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.13 5.17 6.63 -2.91 -0.02 5.15 16 Total: -1.00 -67.73 281.86 2.40 -65.33 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -1.11 Total: 28.93 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 3.04 Total: -29.65 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -2.33 Total: -106.97 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.78 Total: -4.22 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -67.73 2.40 -65.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031004.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.344 kcal (2) G-P(sol) polarization free energy of solvation -67.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds