Wall clock time and date at job start Mon Mar 30 2020 06:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00016 * 2 1 4 4 H 1.48493 * 109.46917 * 269.99742 * 3 2 1 5 5 H 1.48500 * 109.46991 * 30.00267 * 3 2 1 6 6 H 1.48495 * 109.46919 * 150.00141 * 3 2 1 7 7 C 1.37887 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99828 * 174.95537 * 7 2 1 9 9 C 1.50695 * 119.99944 * 354.67770 * 7 2 1 10 10 H 1.09005 * 109.47032 * 335.13545 * 9 7 2 11 11 C 1.52992 * 109.47207 * 215.12803 * 9 7 2 12 12 N 1.46904 * 109.46978 * 65.34730 * 11 9 7 13 13 C 1.50703 * 109.46903 * 95.12812 * 9 7 2 14 14 C 1.34242 * 125.03655 * 264.99835 * 13 9 7 15 15 C 1.46486 * 107.01008 * 180.02562 * 14 13 9 16 16 C 1.39669 * 133.97062 * 179.97438 * 15 14 13 17 17 C 1.37795 * 119.62599 * 180.02562 * 16 15 14 18 18 F 1.35095 * 119.83045 * 179.97438 * 17 16 15 19 19 C 1.39027 * 120.33218 * 0.02562 * 17 16 15 20 20 C 1.37707 * 120.65431 * 359.97438 * 19 17 16 21 21 C 1.39098 * 119.95243 * 0.02562 * 20 19 17 22 22 N 1.36809 * 125.03253 * 84.69738 * 13 9 7 23 23 H 0.97006 * 125.06810 * 359.96420 * 22 13 9 24 24 H 0.97002 * 119.99886 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47468 * 185.34152 * 11 9 7 26 26 H 1.08998 * 109.47371 * 305.34793 * 11 9 7 27 27 H 1.00900 * 111.00512 * 56.04591 * 12 11 9 28 28 H 1.00902 * 111.00078 * 180.02562 * 12 11 9 29 29 H 1.08001 * 126.49431 * 0.02562 * 14 13 9 30 30 H 1.07996 * 120.18404 * 359.97438 * 16 15 14 31 31 H 1.07998 * 119.67264 * 179.97438 * 19 17 16 32 32 H 1.07995 * 120.03043 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0813 -1.1959 -0.0828 9 6 1.2559 -2.4964 0.1199 10 1 0.3044 -2.3234 0.6227 11 6 2.0887 -3.4901 0.9321 12 7 2.2276 -3.0011 2.3104 13 6 1.0025 -3.0591 -1.2549 14 6 -0.1222 -2.8801 -1.9656 15 6 0.0536 -3.5933 -3.2330 16 6 -0.7477 -3.7759 -4.3623 17 6 -0.2759 -4.5245 -5.4185 18 9 -1.0478 -4.7042 -6.5126 19 6 0.9899 -5.0968 -5.3634 20 6 1.7906 -4.9249 -4.2563 21 6 1.3339 -4.1728 -3.1790 22 7 1.8868 -3.8232 -1.9661 23 1 2.7702 -4.0829 -1.6607 24 1 -0.4850 0.8401 0.0004 25 1 1.5918 -4.4602 0.9393 26 1 3.0759 -3.5909 0.4812 27 1 1.3242 -2.8379 2.7291 28 1 2.7745 -3.6403 2.8675 29 1 -0.9919 -2.3171 -1.6607 30 1 -1.7319 -3.3334 -4.4070 31 1 1.3489 -5.6819 -6.1972 32 1 2.7724 -5.3736 -4.2244 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261033549.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:38 Heat of formation + Delta-G solvation = 0.790919 kcal Electronic energy + Delta-G solvation = -17370.298177 eV Core-core repulsion = 14438.047727 eV Total energy + Delta-G solvation = -2932.250450 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.39459 -40.59659 -36.58732 -34.70329 -32.44147 -31.41830 -29.70942 -28.37072 -26.93838 -24.39642 -22.37268 -21.57577 -20.39661 -19.33329 -17.37988 -16.88976 -16.52173 -15.57845 -15.13836 -15.01960 -14.62379 -13.96545 -13.81969 -13.50765 -13.36375 -13.01319 -12.59000 -12.39792 -12.21530 -11.96275 -11.35314 -10.94405 -10.83873 -10.75553 -10.56218 -10.33689 -9.64375 -9.38632 -9.14976 -8.57397 -7.88497 -7.45827 -6.96620 -6.11274 -4.13578 1.50989 1.89685 3.28203 3.35783 3.39092 3.61725 3.81219 4.24949 4.40319 4.73360 5.05424 5.13981 5.30760 5.38677 5.68311 5.72754 5.92127 6.00569 6.04768 6.29338 6.41000 6.45697 6.57093 6.62758 6.81268 6.93630 7.27271 7.39348 7.61790 7.78958 7.81409 7.95857 8.12049 8.16151 8.29417 8.88944 9.48802 10.95953 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024709 B = 0.006467 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.929391 B = 4328.592129 C = 4919.920816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.070 3.930 3 Si 0.895 3.105 4 H -0.283 1.283 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.487 4.487 8 H 0.056 0.944 9 C 0.086 3.914 10 H 0.083 0.917 11 C 0.073 3.927 12 N -0.830 5.830 13 C 0.157 3.843 14 C -0.224 4.224 15 C -0.071 4.071 16 C -0.115 4.115 17 C 0.055 3.945 18 F -0.153 7.153 19 C -0.155 4.155 20 C -0.101 4.101 21 C 0.073 3.927 22 N -0.593 5.593 23 H 0.408 0.592 24 H 0.263 0.737 25 H -0.001 1.001 26 H 0.051 0.949 27 H 0.338 0.662 28 H 0.322 0.678 29 H 0.146 0.854 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 -8.869 -3.417 9.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.209 1.209 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.525 4.525 8 H 0.074 0.926 9 C 0.066 3.934 10 H 0.101 0.899 11 C -0.058 4.058 12 N -0.358 5.358 13 C 0.048 3.952 14 C -0.247 4.247 15 C -0.076 4.076 16 C -0.135 4.135 17 C 0.035 3.965 18 F -0.132 7.132 19 C -0.174 4.174 20 C -0.122 4.122 21 C -0.035 4.035 22 N -0.195 5.195 23 H 0.244 0.756 24 H 0.073 0.927 25 H 0.017 0.983 26 H 0.069 0.931 27 H 0.151 0.849 28 H 0.132 0.868 29 H 0.164 0.836 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.036 -8.122 -3.705 9.157 hybrid contribution 0.264 0.016 -0.003 0.265 sum 2.300 -8.107 -3.708 9.207 Atomic orbital electron populations 1.69895 1.05896 1.27007 1.49056 1.24942 0.94877 0.99337 0.94233 0.86538 0.80038 0.83153 0.77954 1.20887 1.21152 1.19752 1.20686 0.92721 0.88814 1.50234 0.92571 1.17916 0.98551 0.92590 0.84363 0.89948 1.21871 0.99124 0.94507 0.90298 1.58428 1.22126 1.52228 1.02981 1.21827 0.87286 0.88876 0.97173 1.21362 1.01083 1.09228 0.93018 1.19147 0.93229 1.00031 0.95225 1.20342 1.00515 1.00478 0.92135 1.17227 0.90721 1.03748 0.84801 1.91415 1.74932 1.94418 1.52430 1.20469 0.93558 1.04155 0.99261 1.19698 0.99779 1.00948 0.91734 1.18281 0.94685 1.01768 0.88746 1.41954 1.16951 1.46599 1.14043 0.75568 0.92712 0.98284 0.93103 0.84935 0.86761 0.83582 0.85459 0.85518 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.74 12.84 55.43 0.71 -23.02 16 2 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.49 -12.31 8.03 -34.44 -0.28 -12.58 16 8 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 9 C 0.09 1.90 2.35 -92.93 -0.22 1.68 16 10 H 0.08 2.03 7.37 -51.93 -0.38 1.65 16 11 C 0.07 1.35 5.79 -3.83 -0.02 1.33 16 12 N -0.83 -14.49 9.35 -10.37 -0.10 -14.59 16 13 C 0.16 3.36 5.79 -81.78 -0.47 2.88 16 14 C -0.22 -4.92 10.95 -37.67 -0.41 -5.33 16 15 C -0.07 -1.41 6.37 -105.14 -0.67 -2.08 16 16 C -0.12 -2.09 10.07 -39.21 -0.40 -2.48 16 17 C 0.06 0.94 7.29 -39.45 -0.29 0.65 16 18 F -0.15 -2.52 17.26 2.25 0.04 -2.48 16 19 C -0.15 -2.34 9.99 -39.48 -0.39 -2.73 16 20 C -0.10 -1.55 10.06 -39.46 -0.40 -1.95 16 21 C 0.07 1.33 7.27 -83.95 -0.61 0.72 16 22 N -0.59 -10.89 5.85 -6.94 -0.04 -10.93 16 23 H 0.41 6.40 8.21 -40.82 -0.33 6.07 16 24 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 26 H 0.05 0.91 7.59 -51.93 -0.39 0.52 16 27 H 0.34 5.77 8.99 -39.29 -0.35 5.41 16 28 H 0.32 4.56 9.08 -39.29 -0.36 4.20 16 29 H 0.15 3.35 8.06 -52.49 -0.42 2.92 16 30 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 31 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 283.32 15.07 4.27 4.27 Total: -1.00 -27.83 283.32 -7.87 -35.71 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -3.48 Total: 13.34 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -4.25 Total: -18.16 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.57 Total: -48.54 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.83 -7.87 -35.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261033549.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.497 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds