Wall clock time and date at job start Mon Mar 30 2020 06:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00016 * 2 1 4 4 H 1.48493 * 109.46917 * 269.99742 * 3 2 1 5 5 H 1.48500 * 109.46991 * 30.00267 * 3 2 1 6 6 H 1.48495 * 109.46919 * 150.00141 * 3 2 1 7 7 C 1.37887 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99828 * 174.95537 * 7 2 1 9 9 C 1.50695 * 119.99944 * 354.67770 * 7 2 1 10 10 H 1.09005 * 109.47032 * 335.13545 * 9 7 2 11 11 C 1.52992 * 109.47207 * 215.12803 * 9 7 2 12 12 N 1.46904 * 109.46978 * 65.34730 * 11 9 7 13 13 C 1.50703 * 109.46903 * 95.12812 * 9 7 2 14 14 C 1.34242 * 125.03655 * 264.99835 * 13 9 7 15 15 C 1.46486 * 107.01008 * 180.02562 * 14 13 9 16 16 C 1.39669 * 133.97062 * 179.97438 * 15 14 13 17 17 C 1.37795 * 119.62599 * 180.02562 * 16 15 14 18 18 F 1.35095 * 119.83045 * 179.97438 * 17 16 15 19 19 C 1.39027 * 120.33218 * 0.02562 * 17 16 15 20 20 C 1.37707 * 120.65431 * 359.97438 * 19 17 16 21 21 C 1.39098 * 119.95243 * 0.02562 * 20 19 17 22 22 N 1.36809 * 125.03253 * 84.69738 * 13 9 7 23 23 H 0.97006 * 125.06810 * 359.96420 * 22 13 9 24 24 H 0.97002 * 119.99886 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47468 * 185.34152 * 11 9 7 26 26 H 1.08998 * 109.47371 * 305.34793 * 11 9 7 27 27 H 1.00900 * 111.00512 * 56.04591 * 12 11 9 28 28 H 1.00902 * 111.00078 * 180.02562 * 12 11 9 29 29 H 1.08001 * 126.49431 * 0.02562 * 14 13 9 30 30 H 1.07996 * 120.18404 * 359.97438 * 16 15 14 31 31 H 1.07998 * 119.67264 * 179.97438 * 19 17 16 32 32 H 1.07995 * 120.03043 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0813 -1.1959 -0.0828 9 6 1.2559 -2.4964 0.1199 10 1 0.3044 -2.3234 0.6227 11 6 2.0887 -3.4901 0.9321 12 7 2.2276 -3.0011 2.3104 13 6 1.0025 -3.0591 -1.2549 14 6 -0.1222 -2.8801 -1.9656 15 6 0.0536 -3.5933 -3.2330 16 6 -0.7477 -3.7759 -4.3623 17 6 -0.2759 -4.5245 -5.4185 18 9 -1.0478 -4.7042 -6.5126 19 6 0.9899 -5.0968 -5.3634 20 6 1.7906 -4.9249 -4.2563 21 6 1.3339 -4.1728 -3.1790 22 7 1.8868 -3.8232 -1.9661 23 1 2.7702 -4.0829 -1.6607 24 1 -0.4850 0.8401 0.0004 25 1 1.5918 -4.4602 0.9393 26 1 3.0759 -3.5909 0.4812 27 1 1.3242 -2.8379 2.7291 28 1 2.7745 -3.6403 2.8675 29 1 -0.9919 -2.3171 -1.6607 30 1 -1.7319 -3.3334 -4.4070 31 1 1.3489 -5.6819 -6.1972 32 1 2.7724 -5.3736 -4.2244 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261033549.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:37 Heat of formation + Delta-G solvation = -16.681273 kcal Electronic energy + Delta-G solvation = -17371.055828 eV Core-core repulsion = 14438.047727 eV Total energy + Delta-G solvation = -2933.008101 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.71659 -42.06647 -38.04283 -36.23415 -34.25384 -32.84698 -31.30315 -29.80173 -28.49860 -26.20549 -23.76953 -22.99413 -21.91892 -20.94048 -18.88449 -18.57451 -17.99680 -16.96601 -16.62790 -16.46113 -16.29485 -15.54168 -15.20749 -14.92676 -14.84197 -14.46520 -14.07774 -14.01084 -13.85236 -13.38976 -13.03461 -12.70868 -12.55076 -12.47621 -12.11110 -11.75362 -11.39564 -11.17375 -10.62771 -10.54089 -9.28327 -8.88372 -8.51204 -8.06681 -6.14804 0.15224 0.53689 1.41832 1.44792 1.53472 2.01343 2.36386 2.48212 2.84704 3.23347 3.41220 3.77348 3.91495 4.08754 4.31903 4.40089 4.44228 4.58008 4.59566 4.88861 4.95125 5.02932 5.14573 5.24447 5.29511 5.44933 5.53722 5.77190 5.93599 6.06379 6.20904 6.34457 6.52525 6.81422 6.87468 6.97608 7.49197 8.97789 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024709 B = 0.006467 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.929391 B = 4328.592129 C = 4919.920816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.946 3.054 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.488 4.488 8 H 0.050 0.950 9 C 0.088 3.912 10 H 0.049 0.951 11 C 0.083 3.917 12 N -0.842 5.842 13 C 0.148 3.852 14 C -0.250 4.250 15 C -0.100 4.100 16 C -0.132 4.132 17 C 0.054 3.946 18 F -0.150 7.150 19 C -0.140 4.140 20 C -0.089 4.089 21 C 0.067 3.933 22 N -0.581 5.581 23 H 0.422 0.578 24 H 0.259 0.741 25 H 0.015 0.985 26 H 0.061 0.939 27 H 0.339 0.661 28 H 0.343 0.657 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.166 0.834 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.788 -10.569 -4.671 12.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.178 4.178 3 Si 0.773 3.227 4 H -0.213 1.213 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.526 4.526 8 H 0.068 0.932 9 C 0.068 3.932 10 H 0.068 0.932 11 C -0.048 4.048 12 N -0.372 5.372 13 C 0.037 3.963 14 C -0.274 4.274 15 C -0.105 4.105 16 C -0.151 4.151 17 C 0.034 3.966 18 F -0.129 7.129 19 C -0.160 4.160 20 C -0.110 4.110 21 C -0.041 4.041 22 N -0.186 5.186 23 H 0.261 0.739 24 H 0.068 0.932 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.151 0.849 28 H 0.156 0.844 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.183 0.817 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.100 -9.847 -4.952 11.760 hybrid contribution -0.399 0.441 0.285 0.659 sum 3.702 -9.406 -4.667 11.134 Atomic orbital electron populations 1.70017 1.06894 1.27109 1.50801 1.25575 0.95504 1.01977 0.94741 0.85746 0.79113 0.80348 0.77495 1.21293 1.21129 1.19251 1.20915 0.92471 0.90183 1.49060 0.93197 1.17743 0.97263 0.92805 0.85394 0.93241 1.21682 0.98885 0.93934 0.90306 1.58371 1.22605 1.53221 1.02958 1.21436 0.87960 0.90068 0.96807 1.21289 1.00971 1.10199 0.94905 1.19211 0.94942 1.01208 0.95136 1.20449 1.00803 1.01420 0.92447 1.17400 0.91522 1.03356 0.84321 1.91426 1.75075 1.94316 1.52101 1.20929 0.92176 1.02803 1.00074 1.20147 1.01345 0.99337 0.90122 1.18610 0.94027 1.02111 0.89302 1.41749 1.17039 1.45926 1.13848 0.73940 0.93151 0.96702 0.92098 0.84884 0.84439 0.86245 0.85374 0.81655 0.81968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.87 12.84 21.45 0.28 -50.59 16 2 C 0.02 1.18 5.45 84.66 0.46 1.64 16 3 Si 0.95 43.40 29.54 68.60 2.03 45.43 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.49 -24.92 8.03 25.60 0.21 -24.72 16 8 H 0.05 2.56 7.82 -2.91 -0.02 2.54 16 9 C 0.09 3.97 2.35 -12.29 -0.03 3.95 16 10 H 0.05 2.55 7.37 -2.38 -0.02 2.54 16 11 C 0.08 2.99 5.79 86.30 0.50 3.49 16 12 N -0.84 -28.55 9.35 -186.73 -1.75 -30.29 16 13 C 0.15 6.38 5.79 40.87 0.24 6.62 16 14 C -0.25 -11.46 10.95 23.51 0.26 -11.21 16 15 C -0.10 -4.00 6.37 -20.20 -0.13 -4.13 16 16 C -0.13 -4.74 10.07 22.51 0.23 -4.51 16 17 C 0.05 1.70 7.29 22.35 0.16 1.87 16 18 F -0.15 -4.59 17.26 44.97 0.78 -3.82 16 19 C -0.14 -3.62 9.99 22.33 0.22 -3.40 16 20 C -0.09 -2.35 10.06 22.35 0.22 -2.13 16 21 C 0.07 2.32 7.27 38.99 0.28 2.60 16 22 N -0.58 -20.56 5.85 -175.88 -1.03 -21.58 16 23 H 0.42 12.22 8.21 -92.70 -0.76 11.46 16 24 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 25 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.06 2.06 7.59 -2.39 -0.02 2.04 16 27 H 0.34 11.49 8.99 -89.69 -0.81 10.68 16 28 H 0.34 9.08 9.08 -89.69 -0.81 8.26 16 29 H 0.12 5.96 8.06 -2.91 -0.02 5.93 16 30 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 31 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 32 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -60.95 283.32 1.73 -59.22 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -1.20 Total: 31.57 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 2.62 Total: -29.93 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -2.50 Total: -102.47 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.78 Total: -3.82 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -60.95 1.73 -59.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261033549.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.540 kcal (2) G-P(sol) polarization free energy of solvation -60.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds