Wall clock time and date at job start Mon Mar 30 2020 06:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47712 * 2 1 4 4 C 1.50707 * 109.47038 * 120.00143 * 2 1 3 5 5 H 1.07994 * 120.00007 * 119.99513 * 4 2 1 6 6 C 1.37874 * 119.99671 * 299.99795 * 4 2 1 7 7 N 1.31516 * 120.00439 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00030 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46859 * 89.99777 * 8 6 4 10 10 H 1.48500 * 109.47637 * 209.99802 * 8 6 4 11 11 H 1.48497 * 109.47215 * 330.00107 * 8 6 4 12 12 C 1.50703 * 109.46929 * 239.99589 * 2 1 3 13 13 C 1.38344 * 119.99749 * 299.98296 * 12 2 1 14 14 C 1.37736 * 119.51884 * 180.38402 * 13 12 2 15 15 C 1.39631 * 120.61885 * 359.94975 * 14 13 12 16 16 C 1.38180 * 119.96560 * 359.06668 * 15 14 13 17 17 C 1.37771 * 119.99243 * 120.00666 * 12 2 1 18 18 C 1.50045 * 124.71679 * 182.32918 * 16 15 14 19 19 C 1.51879 * 113.53330 * 336.28492 * 18 16 15 20 20 C 1.53510 * 109.00016 * 60.72435 * 19 18 16 21 21 S 1.76457 * 117.73224 * 178.62767 * 15 14 13 22 22 H 1.08998 * 109.47008 * 59.99988 * 1 2 3 23 23 H 1.09000 * 109.47209 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46869 * 300.00444 * 1 2 3 25 25 H 0.97003 * 120.00287 * 180.02562 * 7 6 4 26 26 H 1.08002 * 120.24162 * 0.35578 * 13 12 2 27 27 H 1.08005 * 119.68856 * 179.97438 * 14 13 12 28 28 H 1.08002 * 119.47470 * 359.97438 * 17 12 2 29 29 H 1.08997 * 108.67250 * 97.33037 * 18 16 15 30 30 H 1.09000 * 108.67295 * 215.23494 * 18 16 15 31 31 H 1.09002 * 109.55444 * 180.58317 * 19 18 16 32 32 H 1.09002 * 109.54827 * 300.77579 * 19 18 16 33 33 H 1.09001 * 109.87391 * 47.01934 * 20 19 18 34 34 H 1.08999 * 109.88193 * 168.01749 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.6297 -0.5459 4.4124 10 1 1.3431 -0.9492 5.1121 11 1 2.4857 -2.5662 3.7121 12 6 2.0323 -0.7105 -1.2304 13 6 1.6983 -2.0351 -1.4490 14 6 2.1694 -2.6772 -2.5729 15 6 2.9778 -2.0035 -3.4906 16 6 3.2959 -0.6746 -3.2849 17 6 2.8245 -0.0409 -2.1372 18 6 4.1119 0.1640 -4.2241 19 6 5.0318 -0.6483 -5.1190 20 6 4.1836 -1.5946 -5.9801 21 16 3.5690 -2.9097 -4.8844 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7096 1.1619 3.4845 26 1 1.0732 -2.5621 -0.7434 27 1 1.9107 -3.7114 -2.7460 28 1 3.0799 0.9930 -1.9580 29 1 3.4352 0.7427 -4.8528 30 1 4.7168 0.8560 -3.6382 31 1 5.5986 0.0227 -5.7645 32 1 5.7188 -1.2296 -4.5041 33 1 3.3480 -1.0485 -6.4180 34 1 4.7976 -2.0277 -6.7697 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261034873.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:55 Heat of formation + Delta-G solvation = -0.187687 kcal Electronic energy + Delta-G solvation = -15568.868652 eV Core-core repulsion = 13170.496192 eV Total energy + Delta-G solvation = -2398.372460 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.05866 -35.83082 -33.99496 -31.39506 -30.61292 -28.28949 -26.73531 -25.14680 -23.02829 -22.16713 -21.08567 -19.05914 -17.20633 -16.27572 -15.32986 -15.24403 -14.98929 -14.32718 -13.83837 -13.52019 -13.38872 -12.92636 -12.68740 -12.36880 -12.03205 -11.61637 -11.56143 -11.19978 -11.05836 -10.89071 -10.80829 -10.71232 -10.27145 -10.07828 -9.87927 -9.36472 -9.18664 -8.65035 -8.39359 -8.16928 -6.96078 -6.03146 -4.10229 1.74747 1.90613 1.96394 2.62771 3.29004 3.35790 3.39714 4.28258 4.44760 4.65228 4.74067 4.91360 5.26065 5.28754 5.34840 5.49993 5.52860 5.65143 5.86346 5.96483 6.04120 6.07964 6.20311 6.45864 6.53466 6.80990 6.85417 6.93038 7.14816 7.17453 7.32282 7.60314 7.70700 7.93702 8.06830 8.36552 8.92440 9.54662 11.02289 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.037009 B = 0.005470 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.398128 B = 5117.515349 C = 5235.902722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.070 3.930 3 H 0.034 0.966 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.024 4.024 13 C -0.097 4.097 14 C -0.103 4.103 15 C -0.100 4.100 16 C -0.085 4.085 17 C -0.124 4.124 18 C -0.083 4.083 19 C -0.121 4.121 20 C -0.099 4.099 21 S -0.153 6.153 22 H 0.008 0.992 23 H 0.029 0.971 24 H 0.086 0.914 25 H 0.261 0.739 26 H 0.128 0.872 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -2.581 -14.112 15.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.052 3.948 3 H 0.053 0.947 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.025 4.025 13 C -0.116 4.116 14 C -0.126 4.126 15 C -0.212 4.212 16 C -0.090 4.090 17 C -0.144 4.144 18 C -0.120 4.120 19 C -0.159 4.159 20 C -0.247 4.247 21 S 0.086 5.914 22 H 0.027 0.973 23 H 0.048 0.952 24 H 0.104 0.896 25 H 0.071 0.929 26 H 0.146 0.854 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.790 -3.658 -14.281 15.501 hybrid contribution 0.278 0.894 1.182 1.508 sum 5.068 -2.765 -13.099 14.315 Atomic orbital electron populations 1.21785 0.97522 0.99362 1.00294 1.17917 0.92936 0.95427 0.88536 0.94748 1.21105 1.31216 1.12427 0.89812 0.92422 1.24954 0.94995 0.95001 0.98949 1.69885 1.36644 1.22889 1.23452 0.86579 0.78593 0.80164 0.82624 1.20676 1.21196 1.19842 1.20636 0.92556 0.93852 0.95495 1.20999 0.99750 0.94938 0.95948 1.20822 0.97863 0.99236 0.94683 1.20933 1.04974 0.96007 0.99257 1.19424 0.99996 0.92844 0.96763 1.21170 0.99630 0.99834 0.93729 1.20196 0.97393 0.97616 0.96803 1.21605 0.97884 0.98503 0.97951 1.23696 1.02672 0.98922 0.99449 1.85280 1.76689 1.14185 1.15203 0.97261 0.95203 0.89574 0.92926 0.85404 0.86581 0.86541 0.90968 0.90209 0.90421 0.90354 0.89460 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.78 37.16 0.33 -2.82 16 2 C 0.07 1.74 2.48 -92.92 -0.23 1.50 16 3 H 0.03 0.91 7.85 -51.93 -0.41 0.50 16 4 C -0.51 -13.69 8.25 -34.44 -0.28 -13.97 16 5 H 0.06 1.56 7.60 -52.49 -0.40 1.17 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16 8 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 12 C -0.02 -0.51 4.72 -104.75 -0.49 -1.01 16 13 C -0.10 -1.95 8.72 -39.73 -0.35 -2.30 16 14 C -0.10 -1.88 9.65 -39.25 -0.38 -2.25 16 15 C -0.10 -1.73 6.05 -39.08 -0.24 -1.97 16 16 C -0.08 -1.44 5.77 -104.56 -0.60 -2.05 16 17 C -0.12 -2.39 9.11 -39.35 -0.36 -2.75 16 18 C -0.08 -1.08 5.29 -28.77 -0.15 -1.23 16 19 C -0.12 -1.31 5.83 -27.04 -0.16 -1.46 16 20 C -0.10 -1.07 6.55 37.42 0.24 -0.83 16 21 S -0.15 -2.20 21.99 -107.50 -2.36 -4.57 16 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 23 H 0.03 0.67 7.39 -51.93 -0.38 0.29 16 24 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 25 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.13 2.57 7.58 -52.49 -0.40 2.17 16 27 H 0.12 1.88 8.05 -52.48 -0.42 1.45 16 28 H 0.12 2.12 7.87 -52.49 -0.41 1.71 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.98 8.00 -51.93 -0.42 0.56 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.93 8.03 -51.93 -0.42 0.51 16 33 H 0.09 0.90 8.08 -51.93 -0.42 0.49 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 288.08 15.07 4.34 4.34 Total: -1.00 -28.21 288.08 -10.00 -38.21 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.82 Total: -0.21 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: -2.77 Total: -29.52 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.63 Total: -24.35 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -2.20 SS G_CDS: -2.36 Total: -4.57 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.21 -10.00 -38.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034873.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.026 kcal (2) G-P(sol) polarization free energy of solvation -28.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds