Wall clock time and date at job start Mon Mar 30 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47712 * 2 1 4 4 C 1.50707 * 109.47038 * 120.00143 * 2 1 3 5 5 H 1.07994 * 120.00007 * 119.99513 * 4 2 1 6 6 C 1.37874 * 119.99671 * 299.99795 * 4 2 1 7 7 N 1.31516 * 120.00439 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00030 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46859 * 89.99777 * 8 6 4 10 10 H 1.48500 * 109.47637 * 209.99802 * 8 6 4 11 11 H 1.48497 * 109.47215 * 330.00107 * 8 6 4 12 12 C 1.50703 * 109.46929 * 239.99589 * 2 1 3 13 13 C 1.38344 * 119.99749 * 299.98296 * 12 2 1 14 14 C 1.37736 * 119.51884 * 180.38402 * 13 12 2 15 15 C 1.39631 * 120.61885 * 359.94975 * 14 13 12 16 16 C 1.38180 * 119.96560 * 359.06668 * 15 14 13 17 17 C 1.37771 * 119.99243 * 120.00666 * 12 2 1 18 18 C 1.50045 * 124.71679 * 182.32918 * 16 15 14 19 19 C 1.51879 * 113.53330 * 336.28492 * 18 16 15 20 20 C 1.53510 * 109.00016 * 60.72435 * 19 18 16 21 21 S 1.76457 * 117.73224 * 178.62767 * 15 14 13 22 22 H 1.08998 * 109.47008 * 59.99988 * 1 2 3 23 23 H 1.09000 * 109.47209 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46869 * 300.00444 * 1 2 3 25 25 H 0.97003 * 120.00287 * 180.02562 * 7 6 4 26 26 H 1.08002 * 120.24162 * 0.35578 * 13 12 2 27 27 H 1.08005 * 119.68856 * 179.97438 * 14 13 12 28 28 H 1.08002 * 119.47470 * 359.97438 * 17 12 2 29 29 H 1.08997 * 108.67250 * 97.33037 * 18 16 15 30 30 H 1.09000 * 108.67295 * 215.23494 * 18 16 15 31 31 H 1.09002 * 109.55444 * 180.58317 * 19 18 16 32 32 H 1.09002 * 109.54827 * 300.77579 * 19 18 16 33 33 H 1.09001 * 109.87391 * 47.01934 * 20 19 18 34 34 H 1.08999 * 109.88193 * 168.01749 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.6297 -0.5459 4.4124 10 1 1.3431 -0.9492 5.1121 11 1 2.4857 -2.5662 3.7121 12 6 2.0323 -0.7105 -1.2304 13 6 1.6983 -2.0351 -1.4490 14 6 2.1694 -2.6772 -2.5729 15 6 2.9778 -2.0035 -3.4906 16 6 3.2959 -0.6746 -3.2849 17 6 2.8245 -0.0409 -2.1372 18 6 4.1119 0.1640 -4.2241 19 6 5.0318 -0.6483 -5.1190 20 6 4.1836 -1.5946 -5.9801 21 16 3.5690 -2.9097 -4.8844 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7096 1.1619 3.4845 26 1 1.0732 -2.5621 -0.7434 27 1 1.9107 -3.7114 -2.7460 28 1 3.0799 0.9930 -1.9580 29 1 3.4352 0.7427 -4.8528 30 1 4.7168 0.8560 -3.6382 31 1 5.5986 0.0227 -5.7645 32 1 5.7188 -1.2296 -4.5041 33 1 3.3480 -1.0485 -6.4180 34 1 4.7976 -2.0277 -6.7697 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261034873.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:54 Heat of formation + Delta-G solvation = -13.060184 kcal Electronic energy + Delta-G solvation = -15569.426846 eV Core-core repulsion = 13170.496192 eV Total energy + Delta-G solvation = -2398.930654 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48751 -37.15487 -35.63374 -33.24939 -31.89278 -29.94104 -27.81817 -27.22651 -24.45746 -23.59918 -22.43542 -20.58377 -18.44968 -18.28069 -16.89593 -16.53785 -16.36292 -15.88150 -15.12219 -14.78852 -14.58820 -14.37143 -14.28811 -13.77049 -13.46043 -13.39093 -12.88411 -12.85028 -12.71196 -12.38637 -12.37657 -12.13124 -12.05951 -11.80132 -11.14688 -11.10254 -10.85308 -10.48532 -10.18075 -9.58708 -8.24566 -8.07584 -6.25262 0.39576 0.48371 0.73107 1.40271 1.41464 1.51496 1.52774 2.41442 2.84774 3.16554 3.69595 3.85317 3.88040 4.05373 4.25589 4.41361 4.49358 4.59664 4.63146 4.71779 4.78799 4.86572 4.96981 5.02778 5.05625 5.17603 5.22888 5.25076 5.42405 5.50248 5.59065 5.67880 6.00285 6.06299 6.14067 6.35180 6.82779 7.42619 8.93205 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.037009 B = 0.005470 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.398128 B = 5117.515349 C = 5235.902722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.072 3.928 3 H 0.006 0.994 4 C -0.522 4.522 5 H 0.049 0.951 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.270 1.270 12 C -0.052 4.052 13 C -0.112 4.112 14 C -0.106 4.106 15 C -0.107 4.107 16 C -0.081 4.081 17 C -0.135 4.135 18 C -0.086 4.086 19 C -0.116 4.116 20 C -0.092 4.092 21 S -0.159 6.159 22 H 0.024 0.976 23 H 0.031 0.969 24 H 0.060 0.940 25 H 0.262 0.738 26 H 0.118 0.882 27 H 0.133 0.867 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.303 -3.131 -16.298 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.053 3.947 3 H 0.024 0.976 4 C -0.560 4.560 5 H 0.067 0.933 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.195 1.195 12 C -0.054 4.054 13 C -0.131 4.131 14 C -0.128 4.128 15 C -0.218 4.218 16 C -0.087 4.087 17 C -0.155 4.155 18 C -0.123 4.123 19 C -0.154 4.154 20 C -0.240 4.240 21 S 0.081 5.919 22 H 0.043 0.957 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.136 0.864 27 H 0.151 0.849 28 H 0.137 0.863 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.270 -4.214 -16.478 18.127 hybrid contribution -0.132 1.066 1.716 2.025 sum 6.138 -3.148 -14.762 16.294 Atomic orbital electron populations 1.21621 0.97303 0.99262 0.99700 1.17754 0.93210 0.93966 0.89737 0.97601 1.21354 1.31150 1.12300 0.91159 0.93287 1.25692 0.95202 0.95701 1.01692 1.70004 1.37483 1.23986 1.24066 0.85626 0.78141 0.79115 0.79224 1.20225 1.20591 1.19481 1.20392 0.94926 0.94663 0.95374 1.20917 1.00660 0.94585 0.96985 1.21018 0.97673 1.00007 0.94100 1.21278 1.03879 0.96398 1.00285 1.19855 0.99313 0.93095 0.96429 1.21290 0.99610 1.00088 0.94474 1.20321 0.97752 0.97496 0.96750 1.21603 0.97294 0.98681 0.97852 1.23913 1.03357 0.97688 0.99014 1.85306 1.76410 1.15712 1.14494 0.95726 0.94942 0.92076 0.92845 0.86433 0.84886 0.86335 0.89335 0.89577 0.86782 0.91385 0.88415 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.00 8.78 71.98 0.63 -5.36 16 2 C 0.07 3.70 2.48 -12.28 -0.03 3.67 16 3 H 0.01 0.33 7.85 -2.39 -0.02 0.31 16 4 C -0.52 -29.08 8.25 25.60 0.21 -28.87 16 5 H 0.05 2.75 7.60 -2.91 -0.02 2.72 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -52.80 11.32 21.45 0.24 -52.56 16 8 Si 0.95 43.94 29.54 68.60 2.03 45.96 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 C -0.05 -2.30 4.72 -19.95 -0.09 -2.40 16 13 C -0.11 -4.62 8.72 22.18 0.19 -4.43 16 14 C -0.11 -3.78 9.65 22.49 0.22 -3.57 16 15 C -0.11 -3.53 6.05 22.59 0.14 -3.39 16 16 C -0.08 -2.65 5.77 -19.82 -0.11 -2.76 16 17 C -0.13 -5.25 9.11 22.42 0.20 -5.05 16 18 C -0.09 -1.98 5.29 29.27 0.15 -1.82 16 19 C -0.12 -2.00 5.83 30.40 0.18 -1.82 16 20 C -0.09 -1.57 6.55 72.15 0.47 -1.09 16 21 S -0.16 -4.13 21.99 -56.49 -1.24 -5.37 16 22 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.03 1.52 7.39 -2.39 -0.02 1.51 16 24 H 0.06 3.31 6.07 -2.38 -0.01 3.30 16 25 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 26 H 0.12 4.94 7.58 -2.91 -0.02 4.92 16 27 H 0.13 4.20 8.05 -2.91 -0.02 4.17 16 28 H 0.12 4.41 7.87 -2.91 -0.02 4.39 16 29 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.09 1.89 8.00 -2.39 -0.02 1.87 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.36 8.03 -2.39 -0.02 1.34 16 33 H 0.10 1.55 8.08 -2.39 -0.02 1.53 16 34 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -62.14 288.08 4.71 -57.43 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.07 Total: 10.09 kcal Atomic # 6 Polarization: -58.17 SS G_CDS: 2.61 Total: -55.56 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.24 Total: -52.56 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -1.24 Total: -5.37 kcal Total: -62.14 4.71 -57.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034873.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.368 kcal (2) G-P(sol) polarization free energy of solvation -62.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds