Wall clock time and date at job start Mon Mar 30 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46947 * 2 1 4 4 C 1.50698 * 109.47105 * 240.00261 * 2 1 3 5 5 H 1.07995 * 120.00306 * 245.46310 * 4 2 1 6 6 C 1.37878 * 120.00077 * 65.46253 * 4 2 1 7 7 N 1.31519 * 119.99868 * 9.59946 * 6 4 2 8 8 Si 1.86797 * 120.00161 * 189.59567 * 6 4 2 9 9 H 1.48498 * 109.47321 * 84.99692 * 8 6 4 10 10 H 1.48503 * 109.47070 * 204.99758 * 8 6 4 11 11 H 1.48498 * 109.47206 * 324.99568 * 8 6 4 12 12 C 1.50694 * 109.47057 * 120.00254 * 2 1 3 13 13 C 1.38342 * 119.99614 * 60.02491 * 12 2 1 14 14 C 1.37740 * 119.51632 * 180.34204 * 13 12 2 15 15 C 1.39638 * 120.62262 * 0.05221 * 14 13 12 16 16 C 1.38172 * 119.97087 * 359.26114 * 15 14 13 17 17 C 1.37767 * 119.99502 * 239.99900 * 12 2 1 18 18 C 1.50043 * 124.74949 * 181.12378 * 16 15 14 19 19 C 1.51876 * 113.55703 * 336.79257 * 18 16 15 20 20 C 1.53524 * 108.96978 * 60.55829 * 19 18 16 21 21 S 1.76668 * 117.70521 * 178.58729 * 15 14 13 22 22 H 1.08993 * 109.47132 * 303.26267 * 1 2 3 23 23 H 1.09001 * 109.46910 * 63.25854 * 1 2 3 24 24 H 1.09000 * 109.46841 * 183.25590 * 1 2 3 25 25 H 0.97004 * 119.99969 * 180.02562 * 7 6 4 26 26 H 1.08008 * 120.24295 * 0.31289 * 13 12 2 27 27 H 1.08004 * 119.69070 * 180.02562 * 14 13 12 28 28 H 1.07993 * 119.47065 * 359.89703 * 17 12 2 29 29 H 1.08998 * 108.67010 * 215.73284 * 18 16 15 30 30 H 1.09000 * 108.56038 * 97.77011 * 18 16 15 31 31 H 1.09007 * 109.55377 * 300.70908 * 19 18 16 32 32 H 1.09005 * 109.64336 * 180.45608 * 19 18 16 33 33 H 1.09001 * 109.88341 * 46.86247 * 20 19 18 34 34 H 1.08999 * 109.89108 * 167.88523 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5786 -1.6370 -1.1339 6 6 1.7947 -0.1772 -2.4796 7 7 1.3001 1.0361 -2.5935 8 14 2.1751 -1.1782 -4.0102 9 1 1.0225 -2.0604 -4.3239 10 1 2.4222 -0.2617 -5.1522 11 1 3.3831 -2.0082 -3.7713 12 6 2.0324 -0.7104 1.2304 13 6 1.6985 -2.0351 1.4489 14 6 2.1572 -2.6727 2.5804 15 6 2.9529 -1.9945 3.5059 16 6 3.2995 -0.6756 3.2829 17 6 2.8244 -0.0409 2.1372 18 6 4.1664 0.1461 4.1909 19 6 4.1946 -0.3581 5.6233 20 6 4.7495 -1.7895 5.6376 21 16 3.4670 -2.8752 4.9486 22 1 -0.3633 0.5636 0.8592 23 1 -0.3633 0.4624 -0.9178 24 1 -0.3633 -1.0260 0.0584 25 1 1.1326 1.4111 -3.4723 26 1 1.0823 -2.5652 0.7377 27 1 1.8986 -3.7070 2.7536 28 1 3.0814 0.9924 1.9569 29 1 3.7991 1.1723 4.1894 30 1 5.1834 0.1400 3.7988 31 1 3.1838 -0.3544 6.0313 32 1 4.8338 0.2870 6.2263 33 1 5.6497 -1.8443 5.0256 34 1 4.9780 -2.0884 6.6606 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261034875.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:57 Heat of formation + Delta-G solvation = -1.604101 kcal Electronic energy + Delta-G solvation = -15560.587960 eV Core-core repulsion = 13162.154080 eV Total energy + Delta-G solvation = -2398.433881 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.05915 -35.83118 -33.96823 -31.42193 -30.61565 -28.36097 -26.73820 -25.11599 -23.05063 -22.18856 -21.10086 -19.06232 -17.20201 -16.28571 -15.32695 -15.26179 -14.97625 -14.30863 -13.83504 -13.51493 -13.38685 -12.81596 -12.72727 -12.51280 -11.97813 -11.63360 -11.57122 -11.30929 -11.06251 -10.86259 -10.83882 -10.71557 -10.35412 -10.12620 -9.87467 -9.32296 -9.20176 -8.68603 -8.37857 -8.16848 -6.96595 -6.06478 -4.08955 1.75268 1.90619 1.96404 2.62047 3.29391 3.35932 3.39198 4.28187 4.45164 4.64805 4.74454 4.91250 5.25789 5.28043 5.35280 5.50113 5.54167 5.64908 5.85921 5.96035 6.03990 6.07731 6.19104 6.45506 6.53272 6.75419 6.83001 6.89159 7.08982 7.14381 7.29798 7.58250 7.68066 7.92150 7.94502 8.34977 8.93546 9.54367 11.01955 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.037306 B = 0.005493 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.373855 B = 5096.475783 C = 5283.502007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.069 3.931 3 H 0.042 0.958 4 C -0.511 4.511 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.023 4.023 13 C -0.099 4.099 14 C -0.103 4.103 15 C -0.099 4.099 16 C -0.085 4.085 17 C -0.123 4.123 18 C -0.083 4.083 19 C -0.120 4.120 20 C -0.100 4.100 21 S -0.154 6.154 22 H 0.014 0.986 23 H 0.067 0.933 24 H 0.031 0.969 25 H 0.261 0.739 26 H 0.128 0.872 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.396 -3.036 14.064 15.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.060 0.940 4 C -0.549 4.549 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.025 4.025 13 C -0.118 4.118 14 C -0.126 4.126 15 C -0.211 4.211 16 C -0.090 4.090 17 C -0.143 4.143 18 C -0.121 4.121 19 C -0.158 4.158 20 C -0.249 4.249 21 S 0.086 5.914 22 H 0.033 0.967 23 H 0.086 0.914 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.146 0.854 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.032 -3.964 14.457 15.523 hybrid contribution 0.648 0.655 -1.524 1.781 sum 4.680 -3.309 12.933 14.146 Atomic orbital electron populations 1.21735 0.97950 0.98819 0.99904 1.17922 0.92432 0.96020 0.88599 0.94030 1.21069 1.35820 1.08049 0.89915 0.92399 1.24948 0.95196 0.94623 0.98949 1.69966 1.44901 1.13899 1.23823 0.86646 0.78816 0.80171 0.82658 1.20481 1.21301 1.19932 1.20613 0.92640 0.93796 0.95422 1.20997 0.99887 0.94969 0.95963 1.20814 0.98669 0.99072 0.94042 1.20957 1.05745 0.95791 0.98592 1.19428 1.00082 0.92487 0.97001 1.21175 0.99407 0.99904 0.93773 1.20200 0.99448 0.99305 0.93100 1.21598 1.02277 0.94635 0.97335 1.23670 0.99492 0.97694 1.04020 1.85266 1.46759 1.32588 1.26792 0.96740 0.91365 0.95001 0.92896 0.85434 0.86593 0.86493 0.90218 0.90876 0.90431 0.90388 0.89442 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.93 37.16 0.33 -2.62 16 2 C 0.07 1.69 2.34 -92.92 -0.22 1.47 16 3 H 0.04 1.11 7.80 -51.93 -0.40 0.70 16 4 C -0.51 -13.74 8.19 -34.44 -0.28 -14.02 16 5 H 0.06 1.57 7.55 -52.49 -0.40 1.17 16 6 C 0.06 1.77 5.17 -17.82 -0.09 1.67 16 7 N -0.89 -25.09 12.16 55.43 0.67 -24.42 16 8 Si 0.89 21.08 29.55 -169.99 -5.02 16.05 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 C -0.02 -0.50 4.73 -104.76 -0.50 -0.99 16 13 C -0.10 -1.97 8.62 -39.73 -0.34 -2.31 16 14 C -0.10 -1.86 9.65 -39.24 -0.38 -2.24 16 15 C -0.10 -1.71 6.06 -39.08 -0.24 -1.95 16 16 C -0.08 -1.44 5.77 -104.56 -0.60 -2.04 16 17 C -0.12 -2.37 9.11 -39.35 -0.36 -2.73 16 18 C -0.08 -1.09 5.28 -28.77 -0.15 -1.24 16 19 C -0.12 -1.28 5.84 -27.03 -0.16 -1.44 16 20 C -0.10 -1.09 6.52 37.43 0.24 -0.85 16 21 S -0.15 -2.20 22.01 -107.50 -2.37 -4.57 16 22 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.07 1.73 6.84 -51.93 -0.36 1.38 16 24 H 0.03 0.69 7.30 -51.93 -0.38 0.31 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.13 2.52 7.58 -52.48 -0.40 2.12 16 27 H 0.12 1.86 8.05 -52.48 -0.42 1.44 16 28 H 0.12 2.15 7.87 -52.49 -0.41 1.73 16 29 H 0.08 0.96 8.00 -51.93 -0.42 0.55 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 289.24 15.07 4.36 4.36 Total: -1.00 -28.33 289.24 -9.94 -38.27 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.85 Total: -0.42 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -2.74 Total: -29.28 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.67 Total: -24.42 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -2.20 SS G_CDS: -2.37 Total: -4.57 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.33 -9.94 -38.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034875.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.667 kcal (2) G-P(sol) polarization free energy of solvation -28.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds