Wall clock time and date at job start Mon Mar 30 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46947 * 2 1 4 4 C 1.50698 * 109.47105 * 240.00261 * 2 1 3 5 5 H 1.07995 * 120.00306 * 245.46310 * 4 2 1 6 6 C 1.37878 * 120.00077 * 65.46253 * 4 2 1 7 7 N 1.31519 * 119.99868 * 9.59946 * 6 4 2 8 8 Si 1.86797 * 120.00161 * 189.59567 * 6 4 2 9 9 H 1.48498 * 109.47321 * 84.99692 * 8 6 4 10 10 H 1.48503 * 109.47070 * 204.99758 * 8 6 4 11 11 H 1.48498 * 109.47206 * 324.99568 * 8 6 4 12 12 C 1.50694 * 109.47057 * 120.00254 * 2 1 3 13 13 C 1.38342 * 119.99614 * 60.02491 * 12 2 1 14 14 C 1.37740 * 119.51632 * 180.34204 * 13 12 2 15 15 C 1.39638 * 120.62262 * 0.05221 * 14 13 12 16 16 C 1.38172 * 119.97087 * 359.26114 * 15 14 13 17 17 C 1.37767 * 119.99502 * 239.99900 * 12 2 1 18 18 C 1.50043 * 124.74949 * 181.12378 * 16 15 14 19 19 C 1.51876 * 113.55703 * 336.79257 * 18 16 15 20 20 C 1.53524 * 108.96978 * 60.55829 * 19 18 16 21 21 S 1.76668 * 117.70521 * 178.58729 * 15 14 13 22 22 H 1.08993 * 109.47132 * 303.26267 * 1 2 3 23 23 H 1.09001 * 109.46910 * 63.25854 * 1 2 3 24 24 H 1.09000 * 109.46841 * 183.25590 * 1 2 3 25 25 H 0.97004 * 119.99969 * 180.02562 * 7 6 4 26 26 H 1.08008 * 120.24295 * 0.31289 * 13 12 2 27 27 H 1.08004 * 119.69070 * 180.02562 * 14 13 12 28 28 H 1.07993 * 119.47065 * 359.89703 * 17 12 2 29 29 H 1.08998 * 108.67010 * 215.73284 * 18 16 15 30 30 H 1.09000 * 108.56038 * 97.77011 * 18 16 15 31 31 H 1.09007 * 109.55377 * 300.70908 * 19 18 16 32 32 H 1.09005 * 109.64336 * 180.45608 * 19 18 16 33 33 H 1.09001 * 109.88341 * 46.86247 * 20 19 18 34 34 H 1.08999 * 109.89108 * 167.88523 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5786 -1.6370 -1.1339 6 6 1.7947 -0.1772 -2.4796 7 7 1.3001 1.0361 -2.5935 8 14 2.1751 -1.1782 -4.0102 9 1 1.0225 -2.0604 -4.3239 10 1 2.4222 -0.2617 -5.1522 11 1 3.3831 -2.0082 -3.7713 12 6 2.0324 -0.7104 1.2304 13 6 1.6985 -2.0351 1.4489 14 6 2.1572 -2.6727 2.5804 15 6 2.9529 -1.9945 3.5059 16 6 3.2995 -0.6756 3.2829 17 6 2.8244 -0.0409 2.1372 18 6 4.1664 0.1461 4.1909 19 6 4.1946 -0.3581 5.6233 20 6 4.7495 -1.7895 5.6376 21 16 3.4670 -2.8752 4.9486 22 1 -0.3633 0.5636 0.8592 23 1 -0.3633 0.4624 -0.9178 24 1 -0.3633 -1.0260 0.0584 25 1 1.1326 1.4111 -3.4723 26 1 1.0823 -2.5652 0.7377 27 1 1.8986 -3.7070 2.7536 28 1 3.0814 0.9924 1.9569 29 1 3.7991 1.1723 4.1894 30 1 5.1834 0.1400 3.7988 31 1 3.1838 -0.3544 6.0313 32 1 4.8338 0.2870 6.2263 33 1 5.6497 -1.8443 5.0256 34 1 4.9780 -2.0884 6.6606 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261034875.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:57 Heat of formation + Delta-G solvation = -14.620302 kcal Electronic energy + Delta-G solvation = -15561.152385 eV Core-core repulsion = 13162.154080 eV Total energy + Delta-G solvation = -2398.998306 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48341 -37.14553 -35.60537 -33.28602 -31.89373 -29.99238 -27.82395 -27.18611 -24.48106 -23.61031 -22.44748 -20.57737 -18.44103 -18.28789 -16.88497 -16.51248 -16.37684 -15.87334 -15.15793 -14.61828 -14.53460 -14.50839 -14.29753 -13.87525 -13.50266 -13.35916 -13.00352 -12.77790 -12.67959 -12.42175 -12.33070 -12.20106 -12.11823 -11.76043 -11.22858 -11.01590 -10.86166 -10.47441 -10.19466 -9.58262 -8.26850 -8.09255 -6.24067 0.40189 0.48805 0.73330 1.40352 1.41718 1.50708 1.51938 2.41556 2.85211 3.15597 3.69373 3.85529 3.87593 4.05555 4.25121 4.41277 4.49651 4.60003 4.62782 4.70223 4.78514 4.85108 4.96693 5.01965 5.04476 5.15235 5.20605 5.23525 5.42386 5.50557 5.57866 5.66924 5.91204 6.04103 6.13798 6.34301 6.84197 7.42345 8.92876 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.037306 B = 0.005493 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.373855 B = 5096.475783 C = 5283.502007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.071 3.929 3 H 0.009 0.991 4 C -0.523 4.523 5 H 0.050 0.950 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 0.951 3.049 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.272 1.272 12 C -0.051 4.051 13 C -0.112 4.112 14 C -0.105 4.105 15 C -0.106 4.106 16 C -0.082 4.082 17 C -0.135 4.135 18 C -0.087 4.087 19 C -0.114 4.114 20 C -0.095 4.095 21 S -0.157 6.157 22 H 0.029 0.971 23 H 0.041 0.959 24 H 0.039 0.961 25 H 0.263 0.737 26 H 0.120 0.880 27 H 0.134 0.866 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.811 -3.891 16.130 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.052 3.948 3 H 0.027 0.973 4 C -0.561 4.561 5 H 0.069 0.931 6 C -0.181 4.181 7 N -0.556 5.556 8 Si 0.776 3.224 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.196 1.196 12 C -0.053 4.053 13 C -0.132 4.132 14 C -0.128 4.128 15 C -0.218 4.218 16 C -0.087 4.087 17 C -0.155 4.155 18 C -0.124 4.124 19 C -0.152 4.152 20 C -0.243 4.243 21 S 0.083 5.917 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.138 0.862 27 H 0.152 0.848 28 H 0.135 0.865 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.132 0.868 33 H 0.112 0.888 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.448 -4.829 16.535 18.067 hybrid contribution 0.275 0.918 -2.025 2.240 sum 5.723 -3.911 14.510 16.081 Atomic orbital electron populations 1.21581 0.97419 0.99218 0.99126 1.17752 0.92940 0.94335 0.89765 0.97259 1.21336 1.35660 1.07858 0.91243 0.93140 1.25688 0.95204 0.95489 1.01758 1.70077 1.45937 1.15186 1.24431 0.85684 0.78751 0.78791 0.79169 1.19741 1.20875 1.19639 1.20376 0.94966 0.94673 0.95273 1.20935 1.00728 0.94516 0.97008 1.21023 0.98376 0.99887 0.93470 1.21310 1.04715 0.96141 0.99635 1.19844 0.99560 0.92734 0.96580 1.21285 0.99525 1.00100 0.94570 1.20324 0.98940 0.99098 0.94017 1.21595 1.02827 0.94995 0.95814 1.23887 0.98058 0.96847 1.05472 1.85282 1.48212 1.33296 1.24910 0.95228 0.93955 0.94180 0.92849 0.86159 0.84805 0.86519 0.89359 0.89821 0.91051 0.86810 0.88795 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.93 71.98 0.64 -4.95 16 2 C 0.07 3.62 2.34 -12.29 -0.03 3.59 16 3 H 0.01 0.52 7.80 -2.38 -0.02 0.50 16 4 C -0.52 -29.05 8.19 25.60 0.21 -28.84 16 5 H 0.05 2.81 7.55 -2.91 -0.02 2.79 16 6 C 0.02 0.98 5.17 84.65 0.44 1.42 16 7 N -0.92 -53.33 12.16 21.45 0.26 -53.07 16 8 Si 0.95 43.85 29.55 68.60 2.03 45.88 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 12 C -0.05 -2.26 4.73 -19.95 -0.09 -2.36 16 13 C -0.11 -4.57 8.62 22.18 0.19 -4.38 16 14 C -0.11 -3.72 9.65 22.49 0.22 -3.50 16 15 C -0.11 -3.50 6.06 22.59 0.14 -3.36 16 16 C -0.08 -2.67 5.77 -19.82 -0.11 -2.78 16 17 C -0.14 -5.28 9.11 22.42 0.20 -5.08 16 18 C -0.09 -2.02 5.28 29.27 0.15 -1.86 16 19 C -0.11 -1.95 5.84 30.40 0.18 -1.77 16 20 C -0.09 -1.65 6.52 72.16 0.47 -1.18 16 21 S -0.16 -4.05 22.01 -56.49 -1.24 -5.29 16 22 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.04 2.22 6.84 -2.39 -0.02 2.21 16 24 H 0.04 1.81 7.30 -2.39 -0.02 1.79 16 25 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 26 H 0.12 4.91 7.58 -2.91 -0.02 4.89 16 27 H 0.13 4.15 8.05 -2.91 -0.02 4.12 16 28 H 0.12 4.41 7.87 -2.91 -0.02 4.39 16 29 H 0.09 1.91 8.00 -2.39 -0.02 1.90 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.07 1.36 8.03 -2.38 -0.02 1.34 16 32 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.09 1.59 8.08 -2.39 -0.02 1.57 16 34 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -62.32 289.24 4.72 -57.60 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.07 Total: 9.92 kcal Atomic # 6 Polarization: -57.64 SS G_CDS: 2.60 Total: -55.04 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.26 Total: -53.07 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -4.05 SS G_CDS: -1.24 Total: -5.29 kcal Total: -62.32 4.72 -57.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034875.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.980 kcal (2) G-P(sol) polarization free energy of solvation -62.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds