Wall clock time and date at job start Mon Mar 30 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38345 * 119.99687 * 2 1 4 4 C 1.37741 * 119.51885 * 179.67011 * 3 2 1 5 5 C 1.39629 * 120.62208 * 0.12961 * 4 3 2 6 6 C 1.38179 * 119.97133 * 0.44968 * 5 4 3 7 7 C 1.37766 * 119.99547 * 180.02562 * 2 1 3 8 8 C 1.50697 * 119.47453 * 359.95479 * 7 2 1 9 9 C 1.50043 * 124.74731 * 178.14619 * 6 5 4 10 10 H 1.08998 * 108.66845 * 262.21596 * 9 6 5 11 11 C 1.50695 * 108.66674 * 144.31607 * 9 6 5 12 12 H 1.07999 * 120.00037 * 326.74201 * 11 9 6 13 13 C 1.37883 * 120.00317 * 146.73472 * 11 9 6 14 14 N 1.31516 * 119.99411 * 0.02562 * 13 11 9 15 15 Si 1.86793 * 120.00150 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47186 * 90.00579 * 15 13 11 17 17 H 1.48498 * 109.47249 * 210.00389 * 15 13 11 18 18 H 1.48497 * 109.47379 * 330.00630 * 15 13 11 19 19 C 1.51877 * 113.55055 * 23.26642 * 9 6 5 20 20 C 1.53523 * 108.97948 * 299.43203 * 19 9 6 21 21 S 1.76462 * 117.72504 * 180.52129 * 5 4 3 22 22 H 1.08998 * 109.46941 * 89.99610 * 1 2 3 23 23 H 1.08997 * 109.46843 * 209.99562 * 1 2 3 24 24 H 1.08998 * 109.47107 * 330.00082 * 1 2 3 25 25 H 1.08005 * 120.24038 * 359.65974 * 3 2 1 26 26 H 1.07997 * 119.68559 * 180.14613 * 4 3 2 27 27 H 1.08994 * 109.47170 * 29.58123 * 8 7 2 28 28 H 1.09000 * 109.47207 * 149.58102 * 8 7 2 29 29 H 1.09002 * 109.46705 * 269.57788 * 8 7 2 30 30 H 0.97001 * 119.99615 * 179.97438 * 14 13 11 31 31 H 1.09004 * 109.54964 * 179.58311 * 19 9 6 32 32 H 1.08998 * 109.55612 * 59.28357 * 19 9 6 33 33 H 1.09000 * 109.88936 * 192.02499 * 20 19 9 34 34 H 1.09002 * 109.88127 * 313.04437 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1981 0.0000 4 6 3.5760 1.1867 0.0069 5 6 4.2772 -0.0208 0.0112 6 6 3.5888 -1.2188 -0.0009 7 6 2.1957 -1.1931 -0.0005 8 6 1.4302 -2.4912 -0.0001 9 6 4.2315 -2.5741 -0.0378 10 1 4.2380 -2.9293 -1.0682 11 6 3.4040 -3.5231 0.7903 12 1 2.8858 -3.1636 1.6671 13 6 3.3082 -4.8501 0.4286 14 7 3.9396 -5.2878 -0.6389 15 14 2.2819 -6.0262 1.4546 16 1 0.8882 -6.0432 0.9422 17 1 2.8582 -7.3919 1.3669 18 1 2.2832 -5.5784 2.8705 19 6 5.6560 -2.5847 0.4890 20 6 6.5149 -1.6508 -0.3753 21 16 6.0401 0.0537 0.0341 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6625 2.1357 -0.0055 26 1 4.1186 2.1204 0.0093 27 1 0.4755 -2.3502 -0.5067 28 1 2.0086 -3.2543 -0.5208 29 1 1.2529 -2.8080 1.0277 30 1 3.8725 -6.2215 -0.8932 31 1 6.0556 -3.5977 0.4396 32 1 5.6656 -2.2372 1.5220 33 1 7.5705 -1.8054 -0.1520 34 1 6.3270 -1.8457 -1.4311 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036157.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:01 Heat of formation + Delta-G solvation = 15.964747 kcal Electronic energy + Delta-G solvation = -16357.420311 eV Core-core repulsion = 13959.748272 eV Total energy + Delta-G solvation = -2397.672038 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.24224 -35.54125 -33.10052 -31.86219 -31.01203 -27.21720 -26.93754 -25.78075 -23.15845 -21.86179 -20.33291 -19.08967 -16.73427 -16.42260 -15.24833 -14.92356 -14.30874 -14.17764 -13.55068 -13.27421 -12.63705 -12.54015 -12.30361 -12.11121 -11.88009 -11.80333 -11.75142 -11.43325 -11.23056 -10.78520 -10.57077 -10.40297 -10.23863 -9.90106 -9.72142 -9.19542 -9.09161 -8.64954 -8.43960 -7.60351 -6.69069 -6.17349 -4.07280 1.91603 2.13325 2.33305 3.06775 3.20777 3.29576 3.32488 4.27778 4.39435 5.09755 5.39204 5.52232 5.60740 5.67744 5.75713 5.80991 5.99573 6.05203 6.12587 6.20093 6.32375 6.44426 6.58387 6.67966 6.82363 6.86522 6.91820 6.98926 7.15473 7.22343 7.48837 7.59608 7.62885 7.75887 7.88415 8.20885 8.81827 9.39132 10.90501 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.019374 B = 0.011062 C = 0.007432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.904873 B = 2530.567376 C = 3766.616561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.108 4.108 3 C -0.125 4.125 4 C -0.115 4.115 5 C -0.089 4.089 6 C -0.040 4.040 7 C -0.047 4.047 8 C -0.108 4.108 9 C 0.056 3.944 10 H 0.073 0.927 11 C -0.493 4.493 12 H 0.062 0.938 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.885 3.115 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.099 4.099 20 C -0.095 4.095 21 S -0.172 6.172 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.022 0.978 28 H 0.117 0.883 29 H 0.065 0.935 30 H 0.264 0.736 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 7.430 0.118 7.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.110 4.110 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.201 4.201 6 C -0.045 4.045 7 C -0.049 4.049 8 C -0.164 4.164 9 C 0.037 3.963 10 H 0.090 0.910 11 C -0.532 4.532 12 H 0.081 0.919 13 C -0.143 4.143 14 N -0.528 5.528 15 Si 0.712 3.288 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.138 4.138 20 C -0.243 4.243 21 S 0.069 5.931 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.041 0.959 28 H 0.135 0.865 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.714 8.130 0.220 8.164 hybrid contribution -1.261 -1.595 0.300 2.055 sum -1.975 6.535 0.520 6.846 Atomic orbital electron populations 1.20721 0.92076 1.02028 1.01521 1.19674 0.95513 0.93014 1.02786 1.20611 0.93389 0.96965 1.03528 1.20633 0.93927 0.95767 1.03497 1.21235 0.95237 0.95722 1.07867 1.20388 0.93713 0.94694 0.95719 1.19964 0.93031 0.94839 0.97073 1.21486 0.96711 0.95766 1.02405 1.17751 0.91189 0.87399 0.99921 0.90963 1.20917 1.28808 0.92773 1.10655 0.91938 1.24870 0.96273 0.98052 0.95129 1.69897 1.42533 1.15865 1.24536 0.86669 0.80642 0.80514 0.80937 1.20242 1.21162 1.19742 1.21702 0.96332 0.98371 0.97380 1.23885 1.02868 0.93491 1.04086 1.84815 1.01160 1.17735 1.89420 0.91986 0.91413 0.92550 0.86837 0.86933 0.95896 0.86472 0.91680 0.92631 0.90285 0.92507 0.88850 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.16 36.00 0.33 -1.24 16 2 C -0.11 -1.97 5.87 -104.76 -0.61 -2.59 16 3 C -0.13 -2.15 9.72 -39.72 -0.39 -2.53 16 4 C -0.12 -2.11 9.65 -39.24 -0.38 -2.49 16 5 C -0.09 -1.82 6.05 -39.08 -0.24 -2.05 16 6 C -0.04 -0.88 5.52 -104.55 -0.58 -1.46 16 7 C -0.05 -0.99 5.69 -104.39 -0.59 -1.58 16 8 C -0.11 -2.26 7.10 36.00 0.26 -2.01 16 9 C 0.06 1.31 1.55 -93.81 -0.15 1.16 16 10 H 0.07 1.89 7.35 -51.93 -0.38 1.51 16 11 C -0.49 -12.20 4.25 -34.44 -0.15 -12.34 16 12 H 0.06 1.59 6.34 -52.49 -0.33 1.25 16 13 C 0.06 1.47 4.47 -17.82 -0.08 1.39 16 14 N -0.89 -23.55 12.82 55.43 0.71 -22.84 16 15 Si 0.88 19.90 29.54 -169.99 -5.02 14.88 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C -0.10 -2.12 5.03 -27.03 -0.14 -2.26 16 20 C -0.10 -1.76 6.52 37.43 0.24 -1.52 16 21 S -0.17 -3.22 21.99 -107.50 -2.36 -5.58 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.07 1.00 6.64 -51.93 -0.34 0.65 16 24 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 25 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 26 H 0.11 1.83 8.05 -52.49 -0.42 1.41 16 27 H 0.02 0.42 6.61 -51.93 -0.34 0.08 16 28 H 0.12 2.79 4.68 -51.93 -0.24 2.55 16 29 H 0.06 1.38 6.63 -51.93 -0.34 1.03 16 30 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 32 H 0.06 1.24 8.03 -51.93 -0.42 0.82 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.08 1.57 8.08 -51.93 -0.42 1.15 16 LS Contribution 277.54 15.07 4.18 4.18 Total: -1.00 -25.82 277.54 -9.45 -35.27 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.49 Total: 3.61 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: -2.47 Total: -29.53 kcal Atomic # 7 Polarization: -23.55 SS G_CDS: 0.71 Total: -22.84 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.36 Total: -5.58 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -25.82 -9.45 -35.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036157.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.235 kcal (2) G-P(sol) polarization free energy of solvation -25.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds