Wall clock time and date at job start Mon Mar 30 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38345 * 119.99687 * 2 1 4 4 C 1.37741 * 119.51885 * 179.67011 * 3 2 1 5 5 C 1.39629 * 120.62208 * 0.12961 * 4 3 2 6 6 C 1.38179 * 119.97133 * 0.44968 * 5 4 3 7 7 C 1.37766 * 119.99547 * 180.02562 * 2 1 3 8 8 C 1.50697 * 119.47453 * 359.95479 * 7 2 1 9 9 C 1.50043 * 124.74731 * 178.14619 * 6 5 4 10 10 H 1.08998 * 108.66845 * 262.21596 * 9 6 5 11 11 C 1.50695 * 108.66674 * 144.31607 * 9 6 5 12 12 H 1.07999 * 120.00037 * 326.74201 * 11 9 6 13 13 C 1.37883 * 120.00317 * 146.73472 * 11 9 6 14 14 N 1.31516 * 119.99411 * 0.02562 * 13 11 9 15 15 Si 1.86793 * 120.00150 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47186 * 90.00579 * 15 13 11 17 17 H 1.48498 * 109.47249 * 210.00389 * 15 13 11 18 18 H 1.48497 * 109.47379 * 330.00630 * 15 13 11 19 19 C 1.51877 * 113.55055 * 23.26642 * 9 6 5 20 20 C 1.53523 * 108.97948 * 299.43203 * 19 9 6 21 21 S 1.76462 * 117.72504 * 180.52129 * 5 4 3 22 22 H 1.08998 * 109.46941 * 89.99610 * 1 2 3 23 23 H 1.08997 * 109.46843 * 209.99562 * 1 2 3 24 24 H 1.08998 * 109.47107 * 330.00082 * 1 2 3 25 25 H 1.08005 * 120.24038 * 359.65974 * 3 2 1 26 26 H 1.07997 * 119.68559 * 180.14613 * 4 3 2 27 27 H 1.08994 * 109.47170 * 29.58123 * 8 7 2 28 28 H 1.09000 * 109.47207 * 149.58102 * 8 7 2 29 29 H 1.09002 * 109.46705 * 269.57788 * 8 7 2 30 30 H 0.97001 * 119.99615 * 179.97438 * 14 13 11 31 31 H 1.09004 * 109.54964 * 179.58311 * 19 9 6 32 32 H 1.08998 * 109.55612 * 59.28357 * 19 9 6 33 33 H 1.09000 * 109.88936 * 192.02499 * 20 19 9 34 34 H 1.09002 * 109.88127 * 313.04437 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1981 0.0000 4 6 3.5760 1.1867 0.0069 5 6 4.2772 -0.0208 0.0112 6 6 3.5888 -1.2188 -0.0009 7 6 2.1957 -1.1931 -0.0005 8 6 1.4302 -2.4912 -0.0001 9 6 4.2315 -2.5741 -0.0378 10 1 4.2380 -2.9293 -1.0682 11 6 3.4040 -3.5231 0.7903 12 1 2.8858 -3.1636 1.6671 13 6 3.3082 -4.8501 0.4286 14 7 3.9396 -5.2878 -0.6389 15 14 2.2819 -6.0262 1.4546 16 1 0.8882 -6.0432 0.9422 17 1 2.8582 -7.3919 1.3669 18 1 2.2832 -5.5784 2.8705 19 6 5.6560 -2.5847 0.4890 20 6 6.5149 -1.6508 -0.3753 21 16 6.0401 0.0537 0.0341 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6625 2.1357 -0.0055 26 1 4.1186 2.1204 0.0093 27 1 0.4755 -2.3502 -0.5067 28 1 2.0086 -3.2543 -0.5208 29 1 1.2529 -2.8080 1.0277 30 1 3.8725 -6.2215 -0.8932 31 1 6.0556 -3.5977 0.4396 32 1 5.6656 -2.2372 1.5220 33 1 7.5705 -1.8054 -0.1520 34 1 6.3270 -1.8457 -1.4311 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036157.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:01 Heat of formation + Delta-G solvation = 4.835009 kcal Electronic energy + Delta-G solvation = -16357.902932 eV Core-core repulsion = 13959.748272 eV Total energy + Delta-G solvation = -2398.154660 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77687 -37.21433 -34.71266 -33.58619 -32.54374 -28.94482 -28.42750 -27.24609 -24.96555 -23.45383 -21.80645 -20.72516 -18.66026 -17.93424 -16.84257 -16.61064 -15.82567 -15.77404 -15.02002 -14.88087 -14.23920 -14.11418 -13.85827 -13.75644 -13.42470 -13.29258 -13.10596 -12.99586 -12.91757 -12.57411 -12.26680 -12.10148 -11.80335 -11.56719 -11.41243 -11.00580 -10.74916 -10.35874 -10.11866 -9.20134 -8.19971 -8.09587 -6.05447 0.42367 0.62940 0.84020 1.39157 1.43158 1.50222 1.53452 2.41953 2.87073 3.16255 4.03794 4.09722 4.12488 4.16382 4.25021 4.50639 4.53817 4.61754 4.74514 4.85207 4.90248 4.97258 5.01068 5.12987 5.14977 5.25828 5.32716 5.44493 5.54762 5.61173 5.70723 5.76229 5.89088 6.06589 6.21958 6.39820 6.85279 7.42139 8.95663 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.019374 B = 0.011062 C = 0.007432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.904873 B = 2530.567376 C = 3766.616561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.107 4.107 3 C -0.116 4.116 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.072 4.072 7 C -0.076 4.076 8 C -0.097 4.097 9 C 0.061 3.939 10 H 0.034 0.966 11 C -0.486 4.486 12 H 0.052 0.948 13 C 0.021 3.979 14 N -0.921 5.921 15 Si 0.934 3.066 16 H -0.270 1.270 17 H -0.288 1.288 18 H -0.271 1.271 19 C -0.092 4.092 20 C -0.092 4.092 21 S -0.147 6.147 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.155 0.845 26 H 0.137 0.863 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.262 0.738 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.122 0.878 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 9.690 0.591 10.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.109 4.109 3 C -0.135 4.135 4 C -0.139 4.139 5 C -0.224 4.224 6 C -0.078 4.078 7 C -0.077 4.077 8 C -0.153 4.153 9 C 0.042 3.958 10 H 0.052 0.948 11 C -0.524 4.524 12 H 0.070 0.930 13 C -0.178 4.178 14 N -0.561 5.561 15 Si 0.760 3.240 16 H -0.195 1.195 17 H -0.214 1.214 18 H -0.196 1.196 19 C -0.131 4.131 20 C -0.240 4.240 21 S 0.094 5.906 22 H 0.094 0.906 23 H 0.082 0.918 24 H 0.103 0.897 25 H 0.173 0.827 26 H 0.155 0.845 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.140 0.860 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.728 10.398 0.700 10.564 hybrid contribution -0.986 -2.184 0.145 2.401 sum -2.714 8.214 0.844 8.692 Atomic orbital electron populations 1.20788 0.89384 1.03287 1.02768 1.20087 0.97539 0.92299 1.00968 1.21089 0.93103 0.98158 1.01145 1.21006 0.94806 0.95730 1.02391 1.21527 0.96435 0.96043 1.08371 1.20313 0.94631 0.94432 0.98398 1.20109 0.92902 0.95878 0.98850 1.21215 0.97281 0.95292 1.01498 1.17584 0.92236 0.88486 0.97486 0.94765 1.20978 1.28284 0.93148 1.10034 0.92959 1.25392 0.97234 0.99259 0.95893 1.70004 1.44191 1.15883 1.26026 0.85893 0.79729 0.78662 0.79692 1.19489 1.21371 1.19601 1.21496 0.96021 0.98075 0.97503 1.23802 1.03899 0.93290 1.03014 1.84611 0.99985 1.16676 1.89333 0.90587 0.91827 0.89703 0.82726 0.84528 0.93662 0.89931 0.92620 0.92900 0.92282 0.93090 0.86005 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.73 9.16 71.24 0.65 -2.08 16 2 C -0.11 -3.63 5.87 -19.95 -0.12 -3.74 16 3 C -0.12 -3.52 9.72 22.18 0.22 -3.30 16 4 C -0.12 -3.93 9.65 22.49 0.22 -3.71 16 5 C -0.11 -4.47 6.05 22.59 0.14 -4.33 16 6 C -0.07 -3.24 5.52 -19.82 -0.11 -3.35 16 7 C -0.08 -3.15 5.69 -19.71 -0.11 -3.27 16 8 C -0.10 -4.11 7.10 71.24 0.51 -3.60 16 9 C 0.06 2.96 1.55 -12.86 -0.02 2.94 16 10 H 0.03 1.92 7.35 -2.39 -0.02 1.90 16 11 C -0.49 -24.93 4.25 25.60 0.11 -24.82 16 12 H 0.05 2.74 6.34 -2.91 -0.02 2.72 16 13 C 0.02 1.07 4.47 84.66 0.38 1.45 16 14 N -0.92 -50.80 12.82 21.45 0.27 -50.52 16 15 Si 0.93 41.66 29.54 68.60 2.03 43.68 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 17 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 C -0.09 -4.07 5.03 30.40 0.15 -3.92 16 20 C -0.09 -3.40 6.52 72.16 0.47 -2.93 16 21 S -0.15 -5.29 21.99 -56.49 -1.24 -6.53 16 22 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.06 1.70 6.64 -2.39 -0.02 1.68 16 24 H 0.08 1.72 8.09 -2.39 -0.02 1.70 16 25 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 26 H 0.14 3.90 8.05 -2.91 -0.02 3.87 16 27 H 0.04 1.65 6.61 -2.39 -0.02 1.64 16 28 H 0.08 4.09 4.68 -2.39 -0.01 4.08 16 29 H 0.06 2.39 6.63 -2.39 -0.02 2.38 16 30 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.06 2.80 8.14 -2.38 -0.02 2.78 16 32 H 0.05 2.27 8.03 -2.39 -0.02 2.25 16 33 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 34 H 0.08 2.96 8.08 -2.39 -0.02 2.94 16 Total: -1.00 -56.96 277.54 4.63 -52.33 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.09 Total: 15.70 kcal Atomic # 6 Polarization: -57.14 SS G_CDS: 2.48 Total: -54.66 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.27 Total: -50.52 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -1.24 Total: -6.53 kcal Total: -56.96 4.63 -52.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036157.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.167 kcal (2) G-P(sol) polarization free energy of solvation -56.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds