Wall clock time and date at job start Mon Mar 30 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38346 * 119.99528 * 2 1 4 4 C 1.37744 * 119.51376 * 180.37730 * 3 2 1 5 5 C 1.39620 * 120.62103 * 0.02562 * 4 3 2 6 6 C 1.38181 * 119.97040 * 359.22187 * 5 4 3 7 7 C 1.37771 * 119.99050 * 180.02562 * 2 1 3 8 8 C 1.50700 * 119.48029 * 359.75659 * 7 2 1 9 9 C 1.50042 * 124.71065 * 182.14391 * 6 5 4 10 10 H 1.09006 * 108.67286 * 96.97968 * 9 6 5 11 11 C 1.50697 * 108.67441 * 215.01966 * 9 6 5 12 12 H 1.08005 * 119.99818 * 35.24685 * 11 9 6 13 13 C 1.37878 * 120.00233 * 215.24387 * 11 9 6 14 14 N 1.31506 * 119.99684 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99908 * 179.97438 * 13 11 9 16 16 H 1.48509 * 109.46869 * 60.00161 * 15 13 11 17 17 H 1.48502 * 109.47057 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47342 * 300.00401 * 15 13 11 19 19 C 1.51889 * 113.53096 * 336.06792 * 9 6 5 20 20 C 1.53504 * 108.99888 * 60.72988 * 19 9 6 21 21 S 1.76454 * 117.73642 * 178.57717 * 5 4 3 22 22 H 1.09003 * 109.47506 * 269.97871 * 1 2 3 23 23 H 1.09006 * 109.46931 * 29.97449 * 1 2 3 24 24 H 1.08999 * 109.47801 * 149.97979 * 1 2 3 25 25 H 1.07994 * 120.23922 * 0.35864 * 3 2 1 26 26 H 1.08003 * 119.68321 * 179.97438 * 4 3 2 27 27 H 1.08994 * 109.47429 * 96.54097 * 8 7 2 28 28 H 1.09003 * 109.46731 * 216.54636 * 8 7 2 29 29 H 1.09007 * 109.46601 * 336.54144 * 8 7 2 30 30 H 0.97003 * 119.99662 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.54747 * 180.58263 * 19 9 6 32 32 H 1.08996 * 109.55109 * 300.77287 * 19 9 6 33 33 H 1.09000 * 109.88100 * 47.01248 * 20 19 9 34 34 H 1.08994 * 109.88535 * 168.09076 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1982 0.0000 4 6 3.5760 1.1866 -0.0079 5 6 4.2770 -0.0208 -0.0164 6 6 3.5886 -1.2188 -0.0007 7 6 2.1956 -1.1932 -0.0005 8 6 1.4301 -2.4913 0.0045 9 6 4.2322 -2.5736 0.0384 10 1 4.2532 -2.9204 1.0716 11 6 3.3955 -3.5289 -0.7730 12 1 2.8928 -3.1835 -1.6643 13 6 3.2716 -4.8440 -0.3775 14 7 3.8841 -5.2647 0.7075 15 14 2.2338 -6.0279 -1.3829 16 1 2.7802 -6.1176 -2.7609 17 1 2.2622 -7.3710 -0.7501 18 1 0.8337 -5.5360 -1.4366 19 6 5.6504 -2.5872 -0.5051 20 6 6.5201 -1.6499 0.3443 21 16 6.0393 0.0531 -0.0650 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3633 0.8903 -0.5135 24 1 -0.3635 -0.8898 -0.5141 25 1 1.6625 2.1356 0.0058 26 1 4.1187 2.1204 -0.0083 27 1 1.3426 -2.8655 -1.0155 28 1 1.9590 -3.2226 0.6157 29 1 0.4350 -2.3246 0.4170 30 1 3.7967 -6.1897 0.9860 31 1 6.0502 -3.6000 -0.4560 32 1 5.6476 -2.2461 -1.5403 33 1 6.3456 -1.8406 1.4032 34 1 7.5727 -1.8047 0.1075 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036158.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:04 Heat of formation + Delta-G solvation = 16.680311 kcal Electronic energy + Delta-G solvation = -16363.297944 eV Core-core repulsion = 13965.656935 eV Total energy + Delta-G solvation = -2397.641009 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.23490 -35.52672 -33.10922 -31.86001 -31.00006 -27.20834 -26.92958 -25.79233 -23.14713 -21.85323 -20.32511 -19.09449 -16.74896 -16.41439 -15.25333 -14.92917 -14.30894 -14.17833 -13.52633 -13.28194 -12.63254 -12.52934 -12.30772 -12.11278 -11.88208 -11.78430 -11.75330 -11.42829 -11.21788 -10.77843 -10.52820 -10.42079 -10.24400 -9.87507 -9.72278 -9.19406 -9.09019 -8.64219 -8.44196 -7.58308 -6.68987 -6.16559 -4.07465 1.92164 2.14018 2.33242 3.06895 3.22494 3.28779 3.31409 4.28163 4.40061 5.10079 5.39593 5.52702 5.61009 5.67810 5.75422 5.81425 6.00076 6.05786 6.12462 6.19516 6.33311 6.45007 6.58923 6.67850 6.83237 6.87192 6.95302 6.99876 7.15802 7.22549 7.47499 7.60604 7.62300 7.76503 7.88818 8.21015 8.82427 9.40067 10.91372 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.011079 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.058785 B = 2526.636876 C = 3760.262109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.108 4.108 3 C -0.125 4.125 4 C -0.116 4.116 5 C -0.089 4.089 6 C -0.040 4.040 7 C -0.047 4.047 8 C -0.100 4.100 9 C 0.056 3.944 10 H 0.074 0.926 11 C -0.496 4.496 12 H 0.062 0.938 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.885 3.115 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.272 1.272 19 C -0.099 4.099 20 C -0.095 4.095 21 S -0.172 6.172 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.021 0.979 30 H 0.264 0.736 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.555 7.413 -0.277 7.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.110 4.110 3 C -0.145 4.145 4 C -0.139 4.139 5 C -0.201 4.201 6 C -0.045 4.045 7 C -0.049 4.049 8 C -0.156 4.156 9 C 0.038 3.962 10 H 0.092 0.908 11 C -0.534 4.534 12 H 0.080 0.920 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.712 3.288 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.138 4.138 20 C -0.243 4.243 21 S 0.068 5.932 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.091 0.909 28 H 0.123 0.877 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.686 8.112 -0.382 8.149 hybrid contribution -1.240 -1.610 -0.266 2.049 sum -1.925 6.502 -0.649 6.812 Atomic orbital electron populations 1.20734 0.92089 1.02032 1.01536 1.19670 0.95504 0.93001 1.02813 1.20608 0.93385 0.96961 1.03542 1.20630 0.93929 0.95764 1.03532 1.21237 0.95223 0.95737 1.07897 1.20407 0.93720 0.94691 0.95720 1.19973 0.93038 0.94853 0.97007 1.21391 0.95742 0.94908 1.03574 1.17751 0.91143 0.87408 0.99946 0.90812 1.20871 1.29189 0.93543 1.09789 0.92024 1.24862 0.96234 0.98039 0.95007 1.69878 1.42946 1.16797 1.23221 0.86745 0.81193 0.80347 0.80519 1.20153 1.21244 1.19740 1.21707 0.96293 0.98270 0.97541 1.23880 1.02810 0.93526 1.04099 1.84817 1.01159 1.17878 1.89297 0.91992 0.92561 0.91348 0.86844 0.86945 0.90920 0.87685 0.96007 0.92582 0.90406 0.92506 0.89830 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.15 36.01 0.33 -1.25 16 2 C -0.11 -1.97 5.87 -104.75 -0.61 -2.59 16 3 C -0.13 -2.15 9.72 -39.72 -0.39 -2.54 16 4 C -0.12 -2.12 9.65 -39.25 -0.38 -2.50 16 5 C -0.09 -1.82 6.05 -39.09 -0.24 -2.06 16 6 C -0.04 -0.89 5.53 -104.56 -0.58 -1.47 16 7 C -0.05 -0.98 5.70 -104.39 -0.60 -1.58 16 8 C -0.10 -2.11 7.23 36.01 0.26 -1.85 16 9 C 0.06 1.31 1.61 -93.81 -0.15 1.16 16 10 H 0.07 1.94 7.29 -51.93 -0.38 1.56 16 11 C -0.50 -12.25 4.19 -34.44 -0.14 -12.40 16 12 H 0.06 1.56 6.32 -52.48 -0.33 1.23 16 13 C 0.06 1.52 4.41 -17.82 -0.08 1.44 16 14 N -0.89 -23.60 12.79 55.43 0.71 -22.89 16 15 Si 0.88 19.87 29.54 -169.99 -5.02 14.85 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 C -0.10 -2.13 5.03 -27.03 -0.14 -2.26 16 20 C -0.09 -1.76 6.53 37.42 0.24 -1.52 16 21 S -0.17 -3.22 21.99 -107.50 -2.36 -5.59 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 24 H 0.07 1.01 6.53 -51.93 -0.34 0.67 16 25 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 26 H 0.11 1.83 8.05 -52.48 -0.42 1.41 16 27 H 0.07 1.57 6.18 -51.93 -0.32 1.25 16 28 H 0.10 2.50 5.16 -51.93 -0.27 2.23 16 29 H 0.02 0.40 6.28 -51.92 -0.33 0.07 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 32 H 0.06 1.24 8.04 -51.93 -0.42 0.82 16 33 H 0.08 1.57 8.08 -51.93 -0.42 1.15 16 34 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 277.11 15.07 4.18 4.18 Total: -1.00 -25.81 277.11 -9.43 -35.24 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.47 Total: 3.62 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: -2.46 Total: -29.41 kcal Atomic # 7 Polarization: -23.60 SS G_CDS: 0.71 Total: -22.89 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.36 Total: -5.59 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -25.81 -9.43 -35.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036158.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.922 kcal (2) G-P(sol) polarization free energy of solvation -25.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds