Wall clock time and date at job start Mon Mar 30 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38346 * 119.99528 * 2 1 4 4 C 1.37744 * 119.51376 * 180.37730 * 3 2 1 5 5 C 1.39620 * 120.62103 * 0.02562 * 4 3 2 6 6 C 1.38181 * 119.97040 * 359.22187 * 5 4 3 7 7 C 1.37771 * 119.99050 * 180.02562 * 2 1 3 8 8 C 1.50700 * 119.48029 * 359.75659 * 7 2 1 9 9 C 1.50042 * 124.71065 * 182.14391 * 6 5 4 10 10 H 1.09006 * 108.67286 * 96.97968 * 9 6 5 11 11 C 1.50697 * 108.67441 * 215.01966 * 9 6 5 12 12 H 1.08005 * 119.99818 * 35.24685 * 11 9 6 13 13 C 1.37878 * 120.00233 * 215.24387 * 11 9 6 14 14 N 1.31506 * 119.99684 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99908 * 179.97438 * 13 11 9 16 16 H 1.48509 * 109.46869 * 60.00161 * 15 13 11 17 17 H 1.48502 * 109.47057 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47342 * 300.00401 * 15 13 11 19 19 C 1.51889 * 113.53096 * 336.06792 * 9 6 5 20 20 C 1.53504 * 108.99888 * 60.72988 * 19 9 6 21 21 S 1.76454 * 117.73642 * 178.57717 * 5 4 3 22 22 H 1.09003 * 109.47506 * 269.97871 * 1 2 3 23 23 H 1.09006 * 109.46931 * 29.97449 * 1 2 3 24 24 H 1.08999 * 109.47801 * 149.97979 * 1 2 3 25 25 H 1.07994 * 120.23922 * 0.35864 * 3 2 1 26 26 H 1.08003 * 119.68321 * 179.97438 * 4 3 2 27 27 H 1.08994 * 109.47429 * 96.54097 * 8 7 2 28 28 H 1.09003 * 109.46731 * 216.54636 * 8 7 2 29 29 H 1.09007 * 109.46601 * 336.54144 * 8 7 2 30 30 H 0.97003 * 119.99662 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.54747 * 180.58263 * 19 9 6 32 32 H 1.08996 * 109.55109 * 300.77287 * 19 9 6 33 33 H 1.09000 * 109.88100 * 47.01248 * 20 19 9 34 34 H 1.08994 * 109.88535 * 168.09076 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1982 0.0000 4 6 3.5760 1.1866 -0.0079 5 6 4.2770 -0.0208 -0.0164 6 6 3.5886 -1.2188 -0.0007 7 6 2.1956 -1.1932 -0.0005 8 6 1.4301 -2.4913 0.0045 9 6 4.2322 -2.5736 0.0384 10 1 4.2532 -2.9204 1.0716 11 6 3.3955 -3.5289 -0.7730 12 1 2.8928 -3.1835 -1.6643 13 6 3.2716 -4.8440 -0.3775 14 7 3.8841 -5.2647 0.7075 15 14 2.2338 -6.0279 -1.3829 16 1 2.7802 -6.1176 -2.7609 17 1 2.2622 -7.3710 -0.7501 18 1 0.8337 -5.5360 -1.4366 19 6 5.6504 -2.5872 -0.5051 20 6 6.5201 -1.6499 0.3443 21 16 6.0393 0.0531 -0.0650 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3633 0.8903 -0.5135 24 1 -0.3635 -0.8898 -0.5141 25 1 1.6625 2.1356 0.0058 26 1 4.1187 2.1204 -0.0083 27 1 1.3426 -2.8655 -1.0155 28 1 1.9590 -3.2226 0.6157 29 1 0.4350 -2.3246 0.4170 30 1 3.7967 -6.1897 0.9860 31 1 6.0502 -3.6000 -0.4560 32 1 5.6476 -2.2461 -1.5403 33 1 6.3456 -1.8406 1.4032 34 1 7.5727 -1.8047 0.1075 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036158.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:03 Heat of formation + Delta-G solvation = 5.520691 kcal Electronic energy + Delta-G solvation = -16363.781861 eV Core-core repulsion = 13965.656935 eV Total energy + Delta-G solvation = -2398.124927 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77182 -37.20107 -34.72548 -33.58397 -32.53622 -28.93667 -28.42618 -27.26097 -24.95528 -23.44641 -21.80279 -20.73177 -18.67682 -17.92745 -16.85028 -16.61464 -15.82599 -15.77296 -14.99924 -14.88597 -14.23223 -14.11195 -13.85420 -13.76239 -13.44125 -13.28600 -13.11985 -12.98145 -12.92389 -12.55605 -12.21540 -12.13499 -11.78850 -11.54091 -11.41502 -11.00842 -10.75136 -10.36096 -10.11386 -9.18891 -8.19819 -8.09169 -6.05977 0.42634 0.63341 0.83889 1.40986 1.43310 1.48784 1.53514 2.42283 2.87553 3.16549 4.03860 4.09629 4.12471 4.16556 4.25145 4.50399 4.53865 4.61937 4.74296 4.85069 4.90292 4.97348 5.01274 5.13268 5.17635 5.25761 5.32736 5.44961 5.54856 5.60724 5.69890 5.76082 5.88728 6.06967 6.23460 6.38698 6.85886 7.42876 8.96145 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.011079 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.058785 B = 2526.636876 C = 3760.262109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.107 4.107 3 C -0.116 4.116 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.072 4.072 7 C -0.075 4.075 8 C -0.089 4.089 9 C 0.060 3.940 10 H 0.035 0.965 11 C -0.489 4.489 12 H 0.053 0.947 13 C 0.022 3.978 14 N -0.922 5.922 15 Si 0.933 3.067 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.262 1.262 19 C -0.092 4.092 20 C -0.092 4.092 21 S -0.147 6.147 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.155 0.845 26 H 0.137 0.863 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.262 0.738 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.576 9.710 -0.809 10.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.109 4.109 3 C -0.135 4.135 4 C -0.139 4.139 5 C -0.224 4.224 6 C -0.078 4.078 7 C -0.077 4.077 8 C -0.145 4.145 9 C 0.042 3.958 10 H 0.053 0.947 11 C -0.527 4.527 12 H 0.071 0.929 13 C -0.176 4.176 14 N -0.562 5.562 15 Si 0.759 3.241 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.187 1.187 19 C -0.131 4.131 20 C -0.240 4.240 21 S 0.094 5.906 22 H 0.094 0.906 23 H 0.103 0.897 24 H 0.082 0.918 25 H 0.173 0.827 26 H 0.155 0.845 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.714 10.418 -0.924 10.599 hybrid contribution -0.956 -2.209 -0.093 2.409 sum -2.670 8.209 -1.017 8.692 Atomic orbital electron populations 1.20799 0.89394 1.03300 1.02780 1.20084 0.97530 0.92282 1.00973 1.21086 0.93099 0.98152 1.01157 1.21005 0.94810 0.95729 1.02400 1.21528 0.96433 0.96052 1.08398 1.20329 0.94637 0.94435 0.98377 1.20112 0.92914 0.95875 0.98828 1.21116 0.96637 0.94541 1.02160 1.17587 0.92217 0.88509 0.97505 0.94667 1.20952 1.28666 0.93900 1.09200 0.92925 1.25390 0.97219 0.99280 0.95715 1.69992 1.44626 1.16795 1.24737 0.85975 0.80466 0.78563 0.79128 1.20131 1.21424 1.18692 1.21503 0.95980 0.98010 0.97640 1.23799 1.03827 0.93311 1.03054 1.84613 0.99965 1.16833 1.89205 0.90600 0.89683 0.91773 0.82722 0.84531 0.92193 0.91170 0.93615 0.92924 0.92366 0.93044 0.90448 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 9.15 71.24 0.65 -2.09 16 2 C -0.11 -3.62 5.87 -19.95 -0.12 -3.74 16 3 C -0.12 -3.52 9.72 22.18 0.22 -3.30 16 4 C -0.12 -3.93 9.65 22.49 0.22 -3.71 16 5 C -0.11 -4.48 6.05 22.59 0.14 -4.35 16 6 C -0.07 -3.25 5.53 -19.82 -0.11 -3.36 16 7 C -0.08 -3.16 5.70 -19.72 -0.11 -3.27 16 8 C -0.09 -3.77 7.23 71.24 0.52 -3.26 16 9 C 0.06 2.95 1.61 -12.86 -0.02 2.93 16 10 H 0.04 1.98 7.29 -2.38 -0.02 1.96 16 11 C -0.49 -25.07 4.19 25.60 0.11 -24.96 16 12 H 0.05 2.75 6.32 -2.91 -0.02 2.73 16 13 C 0.02 1.16 4.41 84.66 0.37 1.54 16 14 N -0.92 -51.00 12.79 21.45 0.27 -50.73 16 15 Si 0.93 41.55 29.54 68.60 2.03 43.58 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 19 C -0.09 -4.08 5.03 30.40 0.15 -3.93 16 20 C -0.09 -3.39 6.53 72.15 0.47 -2.92 16 21 S -0.15 -5.29 21.99 -56.49 -1.24 -6.53 16 22 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.08 1.72 8.09 -2.38 -0.02 1.70 16 24 H 0.06 1.71 6.53 -2.39 -0.02 1.70 16 25 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 26 H 0.14 3.90 8.05 -2.91 -0.02 3.87 16 27 H 0.06 2.64 6.18 -2.39 -0.01 2.62 16 28 H 0.07 3.48 5.16 -2.39 -0.01 3.46 16 29 H 0.05 1.67 6.28 -2.38 -0.01 1.65 16 30 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 31 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.05 2.29 8.04 -2.39 -0.02 2.27 16 33 H 0.08 2.95 8.08 -2.39 -0.02 2.93 16 34 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 Total: -1.00 -57.07 277.11 4.63 -52.44 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.09 Total: 15.66 kcal Atomic # 6 Polarization: -56.91 SS G_CDS: 2.48 Total: -54.43 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.27 Total: -50.73 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -1.24 Total: -6.53 kcal Total: -57.07 4.63 -52.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036158.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.961 kcal (2) G-P(sol) polarization free energy of solvation -57.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds