Wall clock time and date at job start Mon Mar 30 2020 06:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00016 * 2 1 4 4 H 1.48507 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47090 * 299.99620 * 3 2 1 6 6 H 1.48500 * 109.47148 * 60.00051 * 3 2 1 7 7 C 1.37881 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99819 * 170.59369 * 7 2 1 9 9 C 1.50699 * 119.99915 * 350.58962 * 7 2 1 10 10 H 1.08998 * 109.47297 * 54.55291 * 9 7 2 11 11 C 1.53003 * 109.47308 * 294.55439 * 9 7 2 12 12 N 1.46896 * 109.47325 * 176.79894 * 11 9 7 13 13 C 1.50699 * 109.47083 * 174.55317 * 9 7 2 14 14 C 1.34220 * 126.50365 * 60.02586 * 13 9 7 15 15 N 1.36879 * 109.90719 * 180.02562 * 14 13 9 16 16 H 0.97006 * 125.05921 * 180.02562 * 15 14 13 17 17 C 1.37693 * 109.87784 * 359.97438 * 15 14 13 18 18 C 1.39171 * 133.40854 * 179.97438 * 17 15 14 19 19 C 1.37702 * 119.96575 * 180.02562 * 18 17 15 20 20 C 1.38835 * 120.69550 * 0.02562 * 19 18 17 21 21 C 1.37835 * 120.35360 * 359.96538 * 20 19 18 22 22 F 1.35098 * 120.19429 * 180.02562 * 21 20 19 23 23 C 1.39825 * 119.60400 * 359.73776 * 21 20 19 24 24 H 0.97000 * 119.99722 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46850 * 296.80351 * 11 9 7 26 26 H 1.09005 * 109.47174 * 56.79812 * 11 9 7 27 27 H 1.00899 * 111.00289 * 184.51812 * 12 11 9 28 28 H 1.00896 * 110.99984 * 308.47835 * 12 11 9 29 29 H 1.07998 * 125.03992 * 359.96541 * 14 13 9 30 30 H 1.08002 * 120.01193 * 359.97438 * 18 17 15 31 31 H 1.08001 * 119.65554 * 180.02562 * 19 18 17 32 32 H 1.07997 * 119.82466 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0736 -1.2004 -0.1523 9 6 1.2662 -2.4903 0.2145 10 1 0.4570 -2.5716 -0.5112 11 6 0.6864 -2.5194 1.6302 12 7 -0.0975 -3.7481 1.8131 13 6 2.2176 -3.6455 0.0375 14 6 3.3302 -3.8800 0.7507 15 7 3.9382 -5.0221 0.3038 16 1 4.7578 -5.3948 0.6647 17 6 3.2125 -5.5635 -0.7336 18 6 3.3789 -6.6926 -1.5301 19 6 2.4612 -6.9806 -2.5155 20 6 1.3656 -6.1545 -2.7268 21 6 1.1802 -5.0310 -1.9501 22 9 0.1127 -4.2296 -2.1583 23 6 2.1004 -4.7290 -0.9416 24 1 -0.4850 0.8401 0.0004 25 1 1.4992 -2.4953 2.3561 26 1 0.0424 -1.6523 1.7769 27 1 -0.5514 -3.7567 2.7142 28 1 -0.7690 -3.8628 1.0689 29 1 3.6923 -3.2593 1.5568 30 1 4.2279 -7.3421 -1.3759 31 1 2.5950 -7.8583 -3.1304 32 1 0.6546 -6.3934 -3.5039 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036736.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:43 Heat of formation + Delta-G solvation = 4.709648 kcal Electronic energy + Delta-G solvation = -17922.999840 eV Core-core repulsion = 14990.919319 eV Total energy + Delta-G solvation = -2932.080521 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.10495 -40.56018 -36.37595 -35.04078 -32.13816 -31.18105 -29.08539 -28.88791 -26.62568 -23.76199 -22.31708 -21.70967 -21.23827 -18.53671 -17.42633 -16.53407 -16.03201 -15.42188 -14.93035 -14.72289 -14.60223 -14.35848 -14.15838 -13.55468 -13.31536 -12.53723 -12.48249 -12.12745 -11.94305 -11.46953 -11.15512 -11.02499 -10.93900 -10.87033 -10.53479 -9.87039 -9.61726 -9.29729 -8.64569 -8.36968 -7.77999 -7.56848 -6.80996 -6.02846 -4.05194 1.52620 1.97131 3.28624 3.37138 3.40237 3.55740 3.66759 4.26012 4.45166 4.90177 5.16630 5.26841 5.37258 5.52702 5.69159 5.76856 5.84866 6.11328 6.31994 6.50096 6.60477 6.71007 6.77149 6.90017 6.98854 7.30284 7.41237 7.52616 7.69148 7.91010 7.99864 8.10463 8.22011 8.40040 8.48960 8.99498 9.57691 11.04679 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.007585 C = 0.007344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.996655 B = 3690.651543 C = 3811.782462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.058 0.942 9 C 0.103 3.897 10 H 0.048 0.952 11 C 0.075 3.925 12 N -0.854 5.854 13 C -0.070 4.070 14 C 0.018 3.982 15 N -0.598 5.598 16 H 0.408 0.592 17 C 0.119 3.881 18 C -0.153 4.153 19 C -0.082 4.082 20 C -0.206 4.206 21 C 0.161 3.839 22 F -0.131 7.131 23 C -0.138 4.138 24 H 0.260 0.740 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.317 0.683 28 H 0.331 0.669 29 H 0.164 0.836 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.760 -11.053 -0.370 12.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.077 0.923 9 C 0.084 3.916 10 H 0.066 0.934 11 C -0.055 4.055 12 N -0.381 5.381 13 C -0.076 4.076 14 C -0.104 4.104 15 N -0.201 5.201 16 H 0.244 0.756 17 C 0.009 3.991 18 C -0.174 4.174 19 C -0.102 4.102 20 C -0.227 4.227 21 C 0.141 3.859 22 F -0.110 7.110 23 C -0.144 4.144 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.127 0.873 28 H 0.143 0.857 29 H 0.182 0.818 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.386 -11.238 -0.348 12.467 hybrid contribution -0.163 1.609 0.234 1.634 sum 5.223 -9.629 -0.114 10.955 Atomic orbital electron populations 1.69980 1.05919 1.26493 1.50097 1.24980 0.94787 0.99070 0.94997 0.86594 0.80292 0.83948 0.77562 1.19732 1.21101 1.21003 1.21147 0.94145 0.90088 1.49271 0.92349 1.17391 0.92764 0.88506 0.92945 0.93435 1.21930 0.95848 0.88900 0.98802 1.59004 1.31342 1.42049 1.05731 1.20807 0.96897 0.95767 0.94115 1.21468 0.96306 0.89829 1.02798 1.41671 1.24285 1.23606 1.30512 0.75593 1.17957 0.93115 0.95792 0.92246 1.19871 1.01884 0.96981 0.98675 1.20386 0.93562 0.98892 0.97337 1.20686 1.01807 0.96624 1.03548 1.17182 0.84334 0.89415 0.94953 1.91502 1.53218 1.72374 1.93857 1.19253 0.96344 0.98959 0.99862 0.93035 0.93784 0.93884 0.87328 0.85734 0.81829 0.86618 0.85721 0.85596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 12.15 55.43 0.67 -24.59 16 2 C 0.06 1.74 5.18 -17.82 -0.09 1.65 16 3 Si 0.89 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -13.80 8.34 -34.44 -0.29 -14.09 16 8 H 0.06 1.58 7.69 -52.49 -0.40 1.18 16 9 C 0.10 2.60 2.14 -92.92 -0.20 2.40 16 10 H 0.05 1.35 6.79 -51.93 -0.35 0.99 16 11 C 0.08 1.75 6.00 -3.82 -0.02 1.73 16 12 N -0.85 -17.26 9.32 -10.37 -0.10 -17.35 16 13 C -0.07 -1.57 4.68 -102.71 -0.48 -2.05 16 14 C 0.02 0.35 11.14 -16.71 -0.19 0.16 16 15 N -0.60 -9.55 6.07 -10.65 -0.06 -9.62 16 16 H 0.41 4.81 8.96 -40.82 -0.37 4.44 16 17 C 0.12 2.09 7.27 -84.00 -0.61 1.48 16 18 C -0.15 -2.23 10.07 -39.43 -0.40 -2.63 16 19 C -0.08 -1.15 10.01 -39.56 -0.40 -1.55 16 20 C -0.21 -3.35 10.01 -39.51 -0.40 -3.74 16 21 C 0.16 3.25 7.34 -39.14 -0.29 2.96 16 22 F -0.13 -2.90 16.02 2.25 0.04 -2.86 16 23 C -0.14 -2.90 6.33 -105.09 -0.67 -3.56 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.04 0.99 7.93 -51.93 -0.41 0.58 16 26 H 0.04 1.10 6.83 -51.93 -0.35 0.75 16 27 H 0.32 5.57 9.08 -39.29 -0.36 5.21 16 28 H 0.33 6.82 8.93 -39.29 -0.35 6.47 16 29 H 0.16 2.87 8.06 -52.49 -0.42 2.44 16 30 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 279.69 15.07 4.21 4.21 Total: -1.00 -30.42 279.69 -7.70 -38.12 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -3.42 Total: 13.24 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -4.02 Total: -17.23 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.51 Total: -51.56 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.42 -7.70 -38.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036736.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.834 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds