Wall clock time and date at job start Mon Mar 30 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00016 * 2 1 4 4 H 1.48507 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47090 * 299.99620 * 3 2 1 6 6 H 1.48500 * 109.47148 * 60.00051 * 3 2 1 7 7 C 1.37881 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99819 * 170.59369 * 7 2 1 9 9 C 1.50699 * 119.99915 * 350.58962 * 7 2 1 10 10 H 1.08998 * 109.47297 * 54.55291 * 9 7 2 11 11 C 1.53003 * 109.47308 * 294.55439 * 9 7 2 12 12 N 1.46896 * 109.47325 * 176.79894 * 11 9 7 13 13 C 1.50699 * 109.47083 * 174.55317 * 9 7 2 14 14 C 1.34220 * 126.50365 * 60.02586 * 13 9 7 15 15 N 1.36879 * 109.90719 * 180.02562 * 14 13 9 16 16 H 0.97006 * 125.05921 * 180.02562 * 15 14 13 17 17 C 1.37693 * 109.87784 * 359.97438 * 15 14 13 18 18 C 1.39171 * 133.40854 * 179.97438 * 17 15 14 19 19 C 1.37702 * 119.96575 * 180.02562 * 18 17 15 20 20 C 1.38835 * 120.69550 * 0.02562 * 19 18 17 21 21 C 1.37835 * 120.35360 * 359.96538 * 20 19 18 22 22 F 1.35098 * 120.19429 * 180.02562 * 21 20 19 23 23 C 1.39825 * 119.60400 * 359.73776 * 21 20 19 24 24 H 0.97000 * 119.99722 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46850 * 296.80351 * 11 9 7 26 26 H 1.09005 * 109.47174 * 56.79812 * 11 9 7 27 27 H 1.00899 * 111.00289 * 184.51812 * 12 11 9 28 28 H 1.00896 * 110.99984 * 308.47835 * 12 11 9 29 29 H 1.07998 * 125.03992 * 359.96541 * 14 13 9 30 30 H 1.08002 * 120.01193 * 359.97438 * 18 17 15 31 31 H 1.08001 * 119.65554 * 180.02562 * 19 18 17 32 32 H 1.07997 * 119.82466 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0736 -1.2004 -0.1523 9 6 1.2662 -2.4903 0.2145 10 1 0.4570 -2.5716 -0.5112 11 6 0.6864 -2.5194 1.6302 12 7 -0.0975 -3.7481 1.8131 13 6 2.2176 -3.6455 0.0375 14 6 3.3302 -3.8800 0.7507 15 7 3.9382 -5.0221 0.3038 16 1 4.7578 -5.3948 0.6647 17 6 3.2125 -5.5635 -0.7336 18 6 3.3789 -6.6926 -1.5301 19 6 2.4612 -6.9806 -2.5155 20 6 1.3656 -6.1545 -2.7268 21 6 1.1802 -5.0310 -1.9501 22 9 0.1127 -4.2296 -2.1583 23 6 2.1004 -4.7290 -0.9416 24 1 -0.4850 0.8401 0.0004 25 1 1.4992 -2.4953 2.3561 26 1 0.0424 -1.6523 1.7769 27 1 -0.5514 -3.7567 2.7142 28 1 -0.7690 -3.8628 1.0689 29 1 3.6923 -3.2593 1.5568 30 1 4.2279 -7.3421 -1.3759 31 1 2.5950 -7.8583 -3.1304 32 1 0.6546 -6.3934 -3.5039 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036736.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:42 Heat of formation + Delta-G solvation = -16.156630 kcal Electronic energy + Delta-G solvation = -17923.904670 eV Core-core repulsion = 14990.919319 eV Total energy + Delta-G solvation = -2932.985351 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.64374 -41.93225 -37.75750 -36.77651 -34.13834 -32.68773 -30.62553 -30.22670 -28.28222 -25.75339 -23.65032 -23.23617 -22.77006 -20.09091 -18.92430 -18.42297 -17.50898 -16.79710 -16.56306 -16.44764 -16.13581 -16.01248 -15.50464 -15.19065 -14.89172 -14.32274 -14.02669 -13.83215 -13.40792 -13.20958 -12.87441 -12.68766 -12.38455 -12.31780 -12.18610 -11.71177 -11.44594 -11.26549 -10.46330 -10.12918 -9.34297 -9.09770 -8.31126 -8.04890 -6.21079 0.19807 0.69018 1.39323 1.41267 1.52826 2.04909 2.39878 2.45314 2.93599 3.16807 3.57662 3.96465 4.04290 4.14927 4.28890 4.43264 4.52787 4.76276 4.88218 4.97884 5.06891 5.17592 5.32540 5.45302 5.49259 5.55714 5.79017 5.81755 5.95651 6.14130 6.24733 6.37253 6.52806 6.75440 6.92761 6.95545 7.45308 8.95490 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.007585 C = 0.007344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.996655 B = 3690.651543 C = 3811.782462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.111 3.889 10 H 0.001 0.999 11 C 0.091 3.909 12 N -0.843 5.843 13 C -0.121 4.121 14 C 0.034 3.966 15 N -0.579 5.579 16 H 0.431 0.569 17 C 0.111 3.889 18 C -0.137 4.137 19 C -0.074 4.074 20 C -0.193 4.193 21 C 0.107 3.893 22 F -0.159 7.159 23 C -0.175 4.175 24 H 0.260 0.740 25 H 0.050 0.950 26 H 0.011 0.989 27 H 0.334 0.666 28 H 0.328 0.672 29 H 0.177 0.823 30 H 0.161 0.839 31 H 0.174 0.826 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.184 -13.278 -0.503 15.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.072 0.928 9 C 0.091 3.909 10 H 0.019 0.981 11 C -0.040 4.040 12 N -0.370 5.370 13 C -0.127 4.127 14 C -0.090 4.090 15 N -0.184 5.184 16 H 0.271 0.729 17 C 0.001 3.999 18 C -0.158 4.158 19 C -0.093 4.093 20 C -0.213 4.213 21 C 0.087 3.913 22 F -0.138 7.138 23 C -0.181 4.181 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.029 0.971 27 H 0.146 0.854 28 H 0.139 0.861 29 H 0.194 0.806 30 H 0.178 0.822 31 H 0.191 0.809 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.842 -13.502 -0.465 15.621 hybrid contribution -0.898 2.154 0.215 2.343 sum 6.944 -11.348 -0.250 13.307 Atomic orbital electron populations 1.70117 1.07380 1.27156 1.51171 1.25763 0.95542 1.02414 0.94774 0.85590 0.79347 0.79754 0.77505 1.18800 1.21252 1.20218 1.21472 0.94076 0.91496 1.48897 0.92767 1.17090 0.92077 0.89368 0.92354 0.98087 1.21616 0.95580 0.88649 0.98118 1.58903 1.31343 1.40206 1.06587 1.20595 0.98422 0.96509 0.97176 1.21526 0.95196 0.90393 1.01931 1.41515 1.24649 1.22401 1.29817 0.72874 1.18310 0.92230 0.96379 0.92940 1.20433 1.02788 0.95659 0.96897 1.20981 0.91795 0.99404 0.97127 1.21103 1.02717 0.94988 1.02523 1.17762 0.84824 0.91378 0.97312 1.91421 1.54575 1.73536 1.94243 1.19531 0.98295 0.99789 1.00503 0.93116 0.93151 0.97114 0.85431 0.86103 0.80586 0.82168 0.80859 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.71 12.15 21.45 0.26 -54.45 16 2 C 0.01 0.78 5.18 84.66 0.44 1.22 16 3 Si 0.95 44.21 29.55 68.60 2.03 46.23 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.52 -29.35 8.34 25.60 0.21 -29.14 16 8 H 0.05 3.01 7.69 -2.91 -0.02 2.99 16 9 C 0.11 5.85 2.14 -12.29 -0.03 5.83 16 10 H 0.00 0.06 6.79 -2.39 -0.02 0.04 16 11 C 0.09 4.41 6.00 86.31 0.52 4.93 16 12 N -0.84 -35.07 9.32 -186.71 -1.74 -36.81 16 13 C -0.12 -5.54 4.68 -18.63 -0.09 -5.62 16 14 C 0.03 1.27 11.14 82.99 0.92 2.19 16 15 N -0.58 -17.05 6.07 -187.61 -1.14 -18.19 16 16 H 0.43 8.56 8.96 -92.70 -0.83 7.73 16 17 C 0.11 3.66 7.27 39.02 0.28 3.94 16 18 C -0.14 -3.35 10.07 22.37 0.23 -3.12 16 19 C -0.07 -1.73 10.01 22.29 0.22 -1.51 16 20 C -0.19 -5.92 10.01 22.32 0.22 -5.70 16 21 C 0.11 4.41 7.34 22.56 0.17 4.58 16 22 F -0.16 -7.56 16.02 44.97 0.72 -6.84 16 23 C -0.18 -7.43 6.33 -20.17 -0.13 -7.56 16 24 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.05 2.32 7.93 -2.38 -0.02 2.30 16 26 H 0.01 0.58 6.83 -2.38 -0.02 0.56 16 27 H 0.33 11.84 9.08 -89.69 -0.81 11.03 16 28 H 0.33 14.25 8.93 -89.70 -0.80 13.45 16 29 H 0.18 5.98 8.06 -2.91 -0.02 5.96 16 30 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 32 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -70.59 279.69 1.84 -68.75 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -1.26 Total: 31.28 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 2.97 Total: -29.97 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -2.62 Total: -109.45 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 0.72 Total: -6.84 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -70.59 1.84 -68.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036736.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.591 kcal (2) G-P(sol) polarization free energy of solvation -70.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds