Wall clock time and date at job start Mon Mar 30 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38340 * 119.99532 * 2 1 4 4 C 1.37749 * 119.51830 * 180.36263 * 3 2 1 5 5 C 1.50693 * 119.69120 * 179.97438 * 4 3 2 6 6 C 1.39632 * 120.61409 * 0.02828 * 4 3 2 7 7 C 1.38172 * 119.96774 * 359.20423 * 6 4 3 8 8 C 1.37767 * 119.99114 * 179.97438 * 2 1 3 9 9 C 1.50050 * 124.70404 * 182.09888 * 7 6 4 10 10 C 1.51893 * 113.50792 * 335.96434 * 9 7 6 11 11 H 1.08995 * 109.55222 * 300.95848 * 10 9 7 12 12 C 1.50699 * 109.55101 * 180.66020 * 10 9 7 13 13 H 1.07999 * 120.00277 * 0.49985 * 12 10 9 14 14 C 1.37882 * 120.00098 * 180.51036 * 12 10 9 15 15 N 1.31522 * 119.99571 * 359.97438 * 14 12 10 16 16 Si 1.86791 * 120.00336 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47299 * 59.99897 * 16 14 12 18 18 H 1.48500 * 109.47466 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47290 * 299.99716 * 16 14 12 20 20 C 1.53510 * 108.97278 * 60.81213 * 10 9 7 21 21 S 1.76459 * 117.73128 * 178.52365 * 6 4 3 22 22 H 1.09000 * 109.47113 * 270.02106 * 1 2 3 23 23 H 1.09010 * 109.47000 * 30.01927 * 1 2 3 24 24 H 1.08997 * 109.47255 * 150.01315 * 1 2 3 25 25 H 1.07999 * 120.24408 * 0.34492 * 3 2 1 26 26 H 1.08999 * 109.47540 * 89.99821 * 5 4 3 27 27 H 1.09004 * 109.47280 * 209.99818 * 5 4 3 28 28 H 1.09004 * 109.46862 * 329.99566 * 5 4 3 29 29 H 1.08001 * 119.48391 * 0.02562 * 8 2 1 30 30 H 1.09005 * 108.67784 * 97.00204 * 9 7 6 31 31 H 1.08999 * 108.67387 * 214.92119 * 9 7 6 32 32 H 0.96996 * 119.99781 * 180.02562 * 15 14 12 33 33 H 1.09000 * 109.87705 * 168.07740 * 20 10 9 34 34 H 1.08994 * 109.93879 * 47.03977 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1981 0.0000 4 6 3.5761 1.1867 -0.0076 5 6 4.3333 2.4895 -0.0082 6 6 4.2771 -0.0209 -0.0158 7 6 3.5886 -1.2188 0.0002 8 6 2.1957 -1.1932 0.0005 9 6 4.2323 -2.5736 0.0386 10 6 5.6493 -2.5869 -0.5084 11 1 5.6442 -2.2432 -1.5427 12 6 6.2020 -3.9874 -0.4429 13 1 5.5932 -4.7907 -0.0551 14 6 7.4852 -4.2431 -0.8779 15 7 8.2265 -3.2649 -1.3505 16 14 8.1706 -5.9788 -0.7961 17 1 7.3265 -6.8836 -1.6170 18 1 9.5599 -5.9877 -1.3204 19 1 8.1702 -6.4453 0.6138 20 6 6.5206 -1.6504 0.3402 21 16 6.0394 0.0531 -0.0655 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8899 -0.5142 24 1 -0.3633 -0.8901 -0.5136 25 1 1.6626 2.1357 0.0056 26 1 4.5216 2.8009 1.0193 27 1 5.2826 2.3578 -0.5276 28 1 3.7437 3.2522 -0.5168 29 1 1.6471 -2.1235 0.0005 30 1 4.2537 -2.9208 1.0717 31 1 3.6257 -3.2649 -0.5465 32 1 9.1290 -3.4449 -1.6569 33 1 7.5727 -1.8052 0.1011 34 1 6.3494 -1.8416 1.3995 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261038037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:09 Heat of formation + Delta-G solvation = -4.619207 kcal Electronic energy + Delta-G solvation = -15686.561819 eV Core-core repulsion = 13287.997193 eV Total energy + Delta-G solvation = -2398.564626 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.19926 -35.62930 -33.21751 -32.64427 -30.25915 -27.31358 -26.67226 -25.63174 -25.18580 -21.36328 -20.46860 -19.14344 -16.87855 -16.37850 -15.49292 -14.63904 -14.41238 -14.14866 -13.86954 -13.28657 -13.04995 -12.76976 -12.67917 -12.42380 -12.12357 -11.91515 -11.76806 -11.42454 -11.05310 -10.99538 -10.90550 -10.58335 -10.40948 -10.22794 -9.93411 -9.35969 -9.00373 -8.58577 -8.46033 -8.08038 -6.56659 -6.13189 -4.23162 1.67539 1.77308 2.56351 3.24314 3.30471 3.31945 3.46819 4.04373 4.32884 5.06792 5.14929 5.17090 5.24507 5.51321 5.57700 5.69889 5.80170 5.88647 5.91269 5.99891 6.08496 6.15863 6.20944 6.34988 6.51282 6.57197 6.71817 6.81921 6.87308 6.92416 7.09372 7.37552 7.43043 7.69460 7.83311 8.19809 8.80283 9.42919 10.91555 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.032502 B = 0.006661 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.269050 B = 4202.384615 C = 4957.020015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C -0.122 4.122 4 C -0.074 4.074 5 C -0.111 4.111 6 C -0.068 4.068 7 C -0.063 4.063 8 C -0.120 4.120 9 C -0.081 4.081 10 C 0.050 3.950 11 H 0.042 0.958 12 C -0.513 4.513 13 H 0.060 0.940 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.077 4.077 21 S -0.172 6.172 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.118 0.882 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.265 0.735 33 H 0.137 0.863 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.798 7.326 3.032 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.103 4.103 3 C -0.141 4.141 4 C -0.079 4.079 5 C -0.168 4.168 6 C -0.181 4.181 7 C -0.069 4.069 8 C -0.140 4.140 9 C -0.118 4.118 10 C 0.030 3.970 11 H 0.060 0.940 12 C -0.553 4.553 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.524 5.524 16 Si 0.724 3.276 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.225 4.225 21 S 0.074 5.926 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.136 0.864 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.155 0.845 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.720 8.272 2.733 12.326 hybrid contribution -0.411 -2.028 0.294 2.091 sum -9.131 6.244 3.028 11.468 Atomic orbital electron populations 1.20703 0.91716 1.02211 1.01708 1.19650 0.95512 0.93241 1.01858 1.20611 0.92909 0.97168 1.03426 1.19640 0.93439 0.93773 1.01088 1.20749 1.00202 0.93577 1.02270 1.21389 0.97438 0.94521 1.04759 1.20027 0.93574 0.94912 0.98427 1.21079 0.93383 0.97243 1.02296 1.20474 0.98947 0.90907 1.01450 1.18685 0.87857 0.95211 0.95235 0.93977 1.21069 0.98982 0.92755 1.42501 0.92176 1.25015 0.96972 0.97348 0.94633 1.69829 1.09713 1.31360 1.41468 0.86574 0.78070 0.84438 0.78494 1.20123 1.21139 1.20152 1.24325 1.08342 0.88611 1.01224 1.84993 0.97966 1.21633 1.87990 0.91760 0.92033 0.91912 0.86445 0.91233 0.90767 0.91954 0.86608 0.91600 0.91277 0.92500 0.84528 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 2 C -0.10 -1.50 5.87 -104.75 -0.61 -2.12 16 3 C -0.12 -1.84 9.35 -39.72 -0.37 -2.22 16 4 C -0.07 -1.26 5.90 -104.28 -0.62 -1.88 16 5 C -0.11 -1.60 9.50 36.00 0.34 -1.26 16 6 C -0.07 -1.36 6.05 -39.09 -0.24 -1.60 16 7 C -0.06 -1.26 5.77 -104.56 -0.60 -1.86 16 8 C -0.12 -2.04 9.13 -39.35 -0.36 -2.40 16 9 C -0.08 -1.71 4.50 -28.76 -0.13 -1.84 16 10 C 0.05 1.23 2.01 -92.07 -0.18 1.04 16 11 H 0.04 1.16 8.04 -51.93 -0.42 0.74 16 12 C -0.51 -13.54 8.56 -34.44 -0.29 -13.83 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.67 5.26 -17.81 -0.09 1.58 16 15 N -0.89 -24.44 11.33 55.43 0.63 -23.82 16 16 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 C -0.08 -1.83 5.69 37.42 0.21 -1.62 16 21 S -0.17 -3.63 19.95 -107.50 -2.14 -5.77 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.60 8.09 -51.92 -0.42 0.18 16 24 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 25 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.16 6.54 -51.93 -0.34 0.82 16 28 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 29 H 0.12 1.75 8.01 -52.49 -0.42 1.33 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.07 1.41 8.00 -51.93 -0.42 0.99 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.14 3.56 5.91 -51.93 -0.31 3.25 16 34 H 0.06 1.35 8.08 -51.93 -0.42 0.93 16 LS Contribution 287.07 15.07 4.33 4.33 Total: -1.00 -27.51 287.07 -9.61 -37.12 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.81 Total: 1.47 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -2.59 Total: -28.83 kcal Atomic # 7 Polarization: -24.44 SS G_CDS: 0.63 Total: -23.82 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -2.14 Total: -5.77 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.51 -9.61 -37.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.498 kcal (2) G-P(sol) polarization free energy of solvation -27.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds