Wall clock time and date at job start Mon Mar 30 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38340 * 119.99532 * 2 1 4 4 C 1.37749 * 119.51830 * 180.36263 * 3 2 1 5 5 C 1.50693 * 119.69120 * 179.97438 * 4 3 2 6 6 C 1.39632 * 120.61409 * 0.02828 * 4 3 2 7 7 C 1.38172 * 119.96774 * 359.20423 * 6 4 3 8 8 C 1.37767 * 119.99114 * 179.97438 * 2 1 3 9 9 C 1.50050 * 124.70404 * 182.09888 * 7 6 4 10 10 C 1.51893 * 113.50792 * 335.96434 * 9 7 6 11 11 H 1.08995 * 109.55222 * 300.95848 * 10 9 7 12 12 C 1.50699 * 109.55101 * 180.66020 * 10 9 7 13 13 H 1.07999 * 120.00277 * 0.49985 * 12 10 9 14 14 C 1.37882 * 120.00098 * 180.51036 * 12 10 9 15 15 N 1.31522 * 119.99571 * 359.97438 * 14 12 10 16 16 Si 1.86791 * 120.00336 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47299 * 59.99897 * 16 14 12 18 18 H 1.48500 * 109.47466 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47290 * 299.99716 * 16 14 12 20 20 C 1.53510 * 108.97278 * 60.81213 * 10 9 7 21 21 S 1.76459 * 117.73128 * 178.52365 * 6 4 3 22 22 H 1.09000 * 109.47113 * 270.02106 * 1 2 3 23 23 H 1.09010 * 109.47000 * 30.01927 * 1 2 3 24 24 H 1.08997 * 109.47255 * 150.01315 * 1 2 3 25 25 H 1.07999 * 120.24408 * 0.34492 * 3 2 1 26 26 H 1.08999 * 109.47540 * 89.99821 * 5 4 3 27 27 H 1.09004 * 109.47280 * 209.99818 * 5 4 3 28 28 H 1.09004 * 109.46862 * 329.99566 * 5 4 3 29 29 H 1.08001 * 119.48391 * 0.02562 * 8 2 1 30 30 H 1.09005 * 108.67784 * 97.00204 * 9 7 6 31 31 H 1.08999 * 108.67387 * 214.92119 * 9 7 6 32 32 H 0.96996 * 119.99781 * 180.02562 * 15 14 12 33 33 H 1.09000 * 109.87705 * 168.07740 * 20 10 9 34 34 H 1.08994 * 109.93879 * 47.03977 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1981 0.0000 4 6 3.5761 1.1867 -0.0076 5 6 4.3333 2.4895 -0.0082 6 6 4.2771 -0.0209 -0.0158 7 6 3.5886 -1.2188 0.0002 8 6 2.1957 -1.1932 0.0005 9 6 4.2323 -2.5736 0.0386 10 6 5.6493 -2.5869 -0.5084 11 1 5.6442 -2.2432 -1.5427 12 6 6.2020 -3.9874 -0.4429 13 1 5.5932 -4.7907 -0.0551 14 6 7.4852 -4.2431 -0.8779 15 7 8.2265 -3.2649 -1.3505 16 14 8.1706 -5.9788 -0.7961 17 1 7.3265 -6.8836 -1.6170 18 1 9.5599 -5.9877 -1.3204 19 1 8.1702 -6.4453 0.6138 20 6 6.5206 -1.6504 0.3402 21 16 6.0394 0.0531 -0.0655 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8899 -0.5142 24 1 -0.3633 -0.8901 -0.5136 25 1 1.6626 2.1357 0.0056 26 1 4.5216 2.8009 1.0193 27 1 5.2826 2.3578 -0.5276 28 1 3.7437 3.2522 -0.5168 29 1 1.6471 -2.1235 0.0005 30 1 4.2537 -2.9208 1.0717 31 1 3.6257 -3.2649 -0.5465 32 1 9.1290 -3.4449 -1.6569 33 1 7.5727 -1.8052 0.1011 34 1 6.3494 -1.8416 1.3995 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:08 Heat of formation + Delta-G solvation = -17.116248 kcal Electronic energy + Delta-G solvation = -15687.103731 eV Core-core repulsion = 13287.997193 eV Total energy + Delta-G solvation = -2399.106538 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53873 -37.39242 -34.45542 -34.37468 -31.93771 -28.60092 -27.99143 -27.22992 -26.98161 -23.01363 -21.72026 -20.80388 -18.62224 -18.09027 -17.01098 -16.39249 -16.04668 -15.55742 -15.14096 -14.81233 -14.47979 -14.23987 -13.97331 -13.79043 -13.51007 -13.29427 -13.07118 -12.91768 -12.73330 -12.66060 -12.46361 -12.19004 -12.05425 -11.90740 -11.73684 -11.11391 -10.61680 -10.54898 -10.13729 -9.42497 -8.21973 -8.11784 -6.34775 0.34052 0.44132 0.95462 1.41867 1.42523 1.50917 1.74250 2.39472 2.72764 3.10986 3.86201 3.91128 3.99101 4.29698 4.37584 4.45457 4.47131 4.60983 4.72641 4.73211 4.80894 4.85570 4.88980 4.92114 5.02073 5.09285 5.22187 5.34991 5.44206 5.55938 5.57981 5.68593 5.71604 5.81002 6.11673 6.18587 6.74524 7.34976 8.87071 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.032502 B = 0.006661 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.269050 B = 4202.384615 C = 4957.020015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.089 4.089 3 C -0.116 4.116 4 C -0.080 4.080 5 C -0.109 4.109 6 C -0.100 4.100 7 C -0.089 4.089 8 C -0.130 4.130 9 C -0.071 4.071 10 C 0.052 3.948 11 H 0.002 0.998 12 C -0.534 4.534 13 H 0.062 0.938 14 C 0.016 3.984 15 N -0.914 5.914 16 Si 0.962 3.038 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.268 1.268 20 C -0.075 4.075 21 S -0.174 6.174 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.157 0.843 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.265 0.735 33 H 0.109 0.891 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.358 8.209 3.488 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.092 4.092 3 C -0.136 4.136 4 C -0.085 4.085 5 C -0.166 4.166 6 C -0.213 4.213 7 C -0.095 4.095 8 C -0.150 4.150 9 C -0.108 4.108 10 C 0.032 3.968 11 H 0.020 0.980 12 C -0.573 4.573 13 H 0.080 0.920 14 C -0.184 4.184 15 N -0.553 5.553 16 Si 0.787 3.213 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.223 4.223 21 S 0.070 5.930 22 H 0.099 0.901 23 H 0.101 0.899 24 H 0.089 0.911 25 H 0.174 0.826 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.149 0.851 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.127 0.873 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.306 9.154 3.194 14.893 hybrid contribution 0.250 -2.200 0.136 2.218 sum -11.056 6.954 3.330 13.479 Atomic orbital electron populations 1.20794 0.88395 1.03744 1.03226 1.20163 0.97842 0.92310 0.98844 1.21085 0.92044 0.98928 1.01507 1.20024 0.94682 0.93588 1.00218 1.20794 0.99504 0.93131 1.03189 1.21520 0.95977 0.96063 1.07744 1.20008 0.95089 0.93906 1.00502 1.21281 0.92149 0.99125 1.02423 1.20277 0.96915 0.92608 1.01030 1.18537 0.90301 0.94615 0.93313 0.97995 1.21422 0.99465 0.93755 1.42670 0.91977 1.25808 0.97239 1.01142 0.94203 1.69978 1.09870 1.33280 1.42130 0.85550 0.77270 0.79757 0.78757 1.19548 1.20914 1.19343 1.23966 1.06603 0.90927 1.00786 1.84790 1.00528 1.18774 1.88864 0.90057 0.89908 0.91105 0.82564 0.90049 0.92625 0.88844 0.85082 0.91713 0.91094 0.92584 0.87340 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 10.01 71.24 0.71 -1.12 16 2 C -0.09 -2.36 5.87 -19.95 -0.12 -2.48 16 3 C -0.12 -3.07 9.35 22.18 0.21 -2.86 16 4 C -0.08 -2.57 5.90 -19.65 -0.12 -2.69 16 5 C -0.11 -2.91 9.50 71.23 0.68 -2.23 16 6 C -0.10 -4.02 6.05 22.59 0.14 -3.88 16 7 C -0.09 -3.55 5.77 -19.82 -0.11 -3.67 16 8 C -0.13 -4.20 9.13 22.42 0.20 -3.99 16 9 C -0.07 -3.11 4.50 29.28 0.13 -2.97 16 10 C 0.05 2.70 2.01 -11.73 -0.02 2.68 16 11 H 0.00 0.11 8.04 -2.39 -0.02 0.09 16 12 C -0.53 -29.14 8.56 25.60 0.22 -28.92 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 14 C 0.02 0.86 5.26 84.65 0.45 1.31 16 15 N -0.91 -52.45 11.33 21.45 0.24 -52.21 16 16 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 C -0.07 -3.73 5.69 72.15 0.41 -3.32 16 21 S -0.17 -7.65 19.95 -56.49 -1.13 -8.78 16 22 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.08 1.15 8.09 -2.38 -0.02 1.13 16 24 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 25 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.05 1.69 6.54 -2.38 -0.02 1.68 16 28 H 0.09 1.88 8.08 -2.39 -0.02 1.87 16 29 H 0.13 3.71 8.01 -2.91 -0.02 3.69 16 30 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 31 H 0.07 2.97 8.00 -2.39 -0.02 2.95 16 32 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.11 6.01 5.91 -2.39 -0.01 6.00 16 34 H 0.06 2.82 8.08 -2.39 -0.02 2.80 16 Total: -1.00 -61.79 287.07 4.99 -56.80 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 1.08 Total: 13.50 kcal Atomic # 6 Polarization: -56.92 SS G_CDS: 2.77 Total: -54.15 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.24 Total: -52.21 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: -7.65 SS G_CDS: -1.13 Total: -8.78 kcal Total: -61.79 4.99 -56.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.684 kcal (2) G-P(sol) polarization free energy of solvation -61.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds