Wall clock time and date at job start Mon Mar 30 2020 05:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38324 * 120.06616 * 2 1 4 4 C 1.38270 * 120.58109 * 179.82951 * 3 2 1 5 5 C 1.38622 * 119.75234 * 0.05923 * 4 3 2 6 6 C 1.37555 * 119.39961 * 0.31536 * 5 4 3 7 7 C 1.38338 * 120.07095 * 180.02562 * 2 1 3 8 8 S 1.77528 * 118.64227 * 179.18703 * 6 5 4 9 9 C 1.82044 * 101.36067 * 67.03527 * 8 6 5 10 10 C 1.51528 * 109.89259 * 278.98661 * 9 8 6 11 11 C 1.51184 * 116.23827 * 69.89380 * 10 9 8 12 12 H 1.09006 * 109.09911 * 48.99411 * 11 10 9 13 13 C 1.50702 * 109.09873 * 168.08409 * 11 10 9 14 14 H 1.08002 * 120.00299 * 120.90860 * 13 11 10 15 15 C 1.37884 * 119.99942 * 300.62419 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.51305 * 118.92032 * 180.35893 * 5 4 3 22 22 H 1.09002 * 109.47244 * 269.97926 * 1 2 3 23 23 H 1.08997 * 109.47286 * 29.98109 * 1 2 3 24 24 H 1.08999 * 109.47393 * 149.98212 * 1 2 3 25 25 H 1.07998 * 119.70983 * 359.82134 * 3 2 1 26 26 H 1.07993 * 120.12788 * 180.09247 * 4 3 2 27 27 H 1.08006 * 120.42087 * 359.94692 * 7 2 1 28 28 H 1.08998 * 109.39310 * 39.16009 * 9 8 6 29 29 H 1.09001 * 109.39192 * 158.96194 * 9 8 6 30 30 H 1.09005 * 108.18198 * 308.10065 * 10 9 8 31 31 H 1.08994 * 108.08473 * 191.62199 * 10 9 8 32 32 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 33 33 H 1.09002 * 109.58735 * 344.27733 * 21 5 4 34 34 H 1.08999 * 109.70439 * 223.91675 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1971 0.0000 4 6 3.5826 1.2096 0.0035 5 6 4.2813 0.0123 0.0059 6 6 3.5867 -1.1749 -0.0020 7 6 2.2002 -1.1972 -0.0005 8 16 4.5017 -2.6961 -0.0209 9 6 5.2914 -2.6601 1.6190 10 6 6.5251 -1.7813 1.5779 11 6 6.2834 -0.2965 1.4275 12 1 5.5327 0.0180 2.1526 13 6 7.5690 0.4422 1.6972 14 1 7.9972 1.0769 0.9354 15 6 8.1956 0.3123 2.9186 16 7 7.6742 -0.4606 3.8461 17 14 9.7850 1.2339 3.2555 18 1 10.1591 2.0296 2.0589 19 1 9.5940 2.1431 4.4141 20 1 10.8654 0.2621 3.5618 21 6 5.7939 0.0479 0.0180 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3634 -0.8898 -0.5141 25 1 1.6564 2.1303 -0.0029 26 1 4.1163 2.1484 0.0050 27 1 1.6682 -2.1372 -0.0001 28 1 4.5877 -2.2635 2.3509 29 1 5.5787 -3.6720 1.9046 30 1 7.1488 -2.1092 0.7462 31 1 7.0858 -1.9421 2.4986 32 1 8.1151 -0.5522 4.7053 33 1 6.1382 1.0454 -0.2548 34 1 6.1844 -0.6806 -0.6926 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038073.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:16 Heat of formation + Delta-G solvation = -9.180859 kcal Electronic energy + Delta-G solvation = -15854.848310 eV Core-core repulsion = 13456.085877 eV Total energy + Delta-G solvation = -2398.762434 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.47983 -37.67011 -34.53025 -33.33048 -31.89806 -30.94927 -28.49690 -25.94163 -24.39044 -23.83816 -22.21080 -20.96258 -18.60139 -17.64388 -17.02968 -16.52610 -16.46853 -15.66410 -15.05800 -14.93558 -14.59709 -14.49613 -14.02985 -13.75296 -13.49837 -13.35594 -12.98505 -12.90351 -12.82008 -12.44830 -12.24313 -12.06608 -11.83633 -11.49998 -11.37636 -11.00507 -10.91360 -10.45993 -9.82619 -9.33009 -8.57210 -8.09549 -6.27137 0.13653 0.43067 0.96910 1.39465 1.42063 1.52998 1.64424 2.41328 2.77809 3.13784 3.91661 3.96089 4.06772 4.12271 4.32703 4.34752 4.43993 4.61090 4.64701 4.75129 4.81163 4.88397 4.90948 5.06996 5.11647 5.22058 5.32390 5.38431 5.44249 5.58384 5.60981 5.68142 5.92861 6.04658 6.10746 6.36321 6.84411 7.41467 8.91725 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.029231 B = 0.006951 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.643552 B = 4027.456657 C = 4572.283593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.104 4.104 3 C -0.102 4.102 4 C -0.134 4.134 5 C -0.061 4.061 6 C -0.114 4.114 7 C -0.085 4.085 8 S -0.188 6.188 9 C -0.067 4.067 10 C -0.111 4.111 11 C 0.063 3.937 12 H -0.013 1.013 13 C -0.530 4.530 14 H 0.056 0.944 15 C 0.013 3.987 16 N -0.915 5.915 17 Si 0.955 3.045 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.279 1.279 21 C -0.072 4.072 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.152 0.848 26 H 0.130 0.870 27 H 0.144 0.856 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.262 0.738 33 H 0.062 0.938 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.880 -0.038 -6.475 13.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.120 4.120 4 C -0.154 4.154 5 C -0.064 4.064 6 C -0.225 4.225 7 C -0.105 4.105 8 S 0.047 5.953 9 C -0.214 4.214 10 C -0.150 4.150 11 C 0.045 3.955 12 H 0.005 0.995 13 C -0.567 4.567 14 H 0.074 0.926 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.781 3.219 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.205 1.205 21 C -0.109 4.109 22 H 0.096 0.904 23 H 0.101 0.899 24 H 0.095 0.905 25 H 0.169 0.831 26 H 0.148 0.852 27 H 0.161 0.839 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.713 -0.989 -7.109 13.737 hybrid contribution 1.168 1.301 1.486 2.295 sum -10.544 0.313 -5.622 11.954 Atomic orbital electron populations 1.20786 0.88120 1.04024 1.03174 1.20344 0.97953 0.92056 1.00212 1.21441 0.93363 0.99001 0.98231 1.21478 0.95172 0.97315 1.01412 1.20443 0.96613 0.93263 0.96053 1.21343 0.96493 0.95234 1.09443 1.21427 0.91421 0.99269 0.98418 1.85135 1.59317 1.24621 1.26231 1.23319 1.00089 1.03834 0.94142 1.21107 0.95438 0.95929 1.02542 1.18156 0.94504 0.92325 0.90555 0.99464 1.21642 1.08506 1.27213 0.99385 0.92610 1.25735 1.00655 0.96135 0.95987 1.69970 1.40802 1.39102 1.05601 0.85549 0.79699 0.78576 0.78121 1.19111 1.20738 1.20527 1.20998 0.89533 1.01438 0.98967 0.90434 0.89878 0.90512 0.83080 0.85197 0.83858 0.91689 0.87362 0.94613 0.90347 0.92895 0.91938 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 10.02 71.24 0.71 -1.06 16 2 C -0.10 -2.70 5.89 -19.82 -0.12 -2.81 16 3 C -0.10 -2.78 9.68 22.30 0.22 -2.56 16 4 C -0.13 -4.53 9.66 22.37 0.22 -4.31 16 5 C -0.06 -2.38 4.91 -19.74 -0.10 -2.48 16 6 C -0.11 -4.21 5.62 22.21 0.12 -4.09 16 7 C -0.08 -2.57 9.51 22.40 0.21 -2.36 16 8 S -0.19 -6.98 20.79 -56.49 -1.17 -8.15 16 9 C -0.07 -2.71 6.18 71.50 0.44 -2.27 16 10 C -0.11 -5.32 4.31 29.52 0.13 -5.19 16 11 C 0.06 3.21 1.92 -12.09 -0.02 3.18 16 12 H -0.01 -0.73 7.77 -2.38 -0.02 -0.75 16 13 C -0.53 -29.08 8.43 25.60 0.22 -28.86 16 14 H 0.06 3.01 7.52 -2.91 -0.02 2.99 16 15 C 0.01 0.73 5.22 84.66 0.44 1.17 16 16 N -0.91 -52.19 11.20 21.45 0.24 -51.95 16 17 Si 0.95 43.24 29.54 68.60 2.03 45.26 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 C -0.07 -3.14 4.85 30.08 0.15 -2.99 16 22 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 24 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 25 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 26 H 0.13 4.11 7.97 -2.91 -0.02 4.09 16 27 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 28 H 0.06 2.77 8.12 -2.39 -0.02 2.75 16 29 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 30 H 0.04 1.70 7.87 -2.38 -0.02 1.68 16 31 H 0.08 4.24 5.54 -2.39 -0.01 4.23 16 32 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 33 H 0.06 2.68 7.40 -2.39 -0.02 2.66 16 34 H 0.07 2.97 7.05 -2.39 -0.02 2.95 16 Total: -1.00 -60.76 285.18 4.79 -55.97 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 1.08 Total: 13.50 kcal Atomic # 6 Polarization: -57.26 SS G_CDS: 2.62 Total: -54.64 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.24 Total: -51.95 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -6.98 SS G_CDS: -1.17 Total: -8.15 kcal Total: -60.76 4.79 -55.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038073.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.793 kcal (2) G-P(sol) polarization free energy of solvation -60.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds