Wall clock time and date at job start Mon Mar 30 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38324 * 120.05710 * 2 1 4 4 C 1.38275 * 120.55583 * 179.97438 * 3 2 1 5 5 C 1.38596 * 119.73675 * 0.67229 * 4 3 2 6 6 C 1.37525 * 119.46957 * 359.23613 * 5 4 3 7 7 C 1.38327 * 120.05888 * 180.27983 * 2 1 3 8 8 S 1.77511 * 118.76126 * 180.86672 * 6 5 4 9 9 C 1.82056 * 101.34628 * 292.71531 * 8 6 5 10 10 C 1.51486 * 109.90757 * 80.85844 * 9 8 6 11 11 C 1.51174 * 116.27143 * 290.26690 * 10 9 8 12 12 H 1.09000 * 109.08840 * 311.02197 * 11 10 9 13 13 C 1.50698 * 109.09546 * 192.01411 * 11 10 9 14 14 H 1.08005 * 119.99740 * 240.00203 * 13 11 10 15 15 C 1.37872 * 120.00089 * 59.99524 * 13 11 10 16 16 N 1.31516 * 119.99907 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00004 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47036 * 90.00260 * 17 15 13 19 19 H 1.48504 * 109.47209 * 210.00249 * 17 15 13 20 20 H 1.48499 * 109.47268 * 330.00279 * 17 15 13 21 21 C 1.51361 * 118.92902 * 178.84911 * 5 4 3 22 22 H 1.09002 * 109.47152 * 269.72246 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.72346 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.72327 * 1 2 3 25 25 H 1.07999 * 119.72056 * 0.24930 * 3 2 1 26 26 H 1.08002 * 120.13575 * 180.39429 * 4 3 2 27 27 H 1.08007 * 120.41557 * 359.74961 * 7 2 1 28 28 H 1.08999 * 109.39711 * 200.98669 * 9 8 6 29 29 H 1.08999 * 109.40203 * 320.81795 * 9 8 6 30 30 H 1.09005 * 108.12104 * 52.03276 * 10 9 8 31 31 H 1.08998 * 108.12190 * 168.50026 * 10 9 8 32 32 H 0.97000 * 119.99445 * 180.02562 * 16 15 13 33 33 H 1.08996 * 109.59071 * 136.16669 * 21 5 4 34 34 H 1.09005 * 109.58576 * 15.73357 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1998 1.1972 0.0000 4 6 3.5825 1.2093 0.0005 5 6 4.2805 0.0119 -0.0130 6 6 3.5868 -1.1756 -0.0110 7 6 2.1999 -1.1972 -0.0058 8 16 4.4997 -2.6979 -0.0050 9 6 5.2780 -2.6553 -1.6502 10 6 6.5108 -1.7756 -1.6150 11 6 6.2697 -0.2919 -1.4542 12 1 5.5123 0.0259 -2.1708 13 6 7.5518 0.4490 -1.7334 14 1 7.9953 1.0684 -0.9678 15 6 8.1588 0.3362 -2.9662 16 7 7.6186 -0.4177 -3.8986 17 14 9.7486 1.2541 -3.3120 18 1 10.9046 0.3989 -2.9414 19 1 9.8231 1.5880 -4.7571 20 1 9.7819 2.5051 -2.5126 21 6 5.7934 0.0466 -0.0388 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3633 -0.8875 -0.5181 24 1 -0.3633 0.8925 -0.5095 25 1 1.6562 2.1304 0.0041 26 1 4.1166 2.1480 0.0070 27 1 1.6676 -2.1370 -0.0064 28 1 5.5629 -3.6661 -1.9422 29 1 4.5698 -2.2549 -2.3756 30 1 7.1410 -2.1080 -0.7901 31 1 7.0645 -1.9307 -2.5410 32 1 8.0459 -0.4974 -4.7657 33 1 6.1878 -0.6865 0.6647 34 1 6.1408 1.0428 0.2352 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038076.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:19 Heat of formation + Delta-G solvation = -9.306152 kcal Electronic energy + Delta-G solvation = -15856.199214 eV Core-core repulsion = 13457.431347 eV Total energy + Delta-G solvation = -2398.767867 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48048 -37.66741 -34.52647 -33.33926 -31.89725 -30.94898 -28.49490 -25.93798 -24.39000 -23.83983 -22.21194 -20.96158 -18.59781 -17.64444 -17.02863 -16.52291 -16.46851 -15.67350 -15.05368 -14.92616 -14.58626 -14.50412 -14.03102 -13.74095 -13.49988 -13.37471 -12.99606 -12.90461 -12.80734 -12.45000 -12.25084 -12.05664 -11.84121 -11.48897 -11.38260 -11.00550 -10.92210 -10.45642 -9.82487 -9.32870 -8.57357 -8.09800 -6.26933 0.13627 0.43244 0.96872 1.40899 1.42052 1.51728 1.64280 2.41485 2.77803 3.14113 3.91577 3.96215 4.06562 4.12327 4.32651 4.34798 4.43811 4.60871 4.64554 4.75235 4.80904 4.88970 4.90851 5.06935 5.11601 5.21741 5.32366 5.38369 5.43926 5.58210 5.60984 5.68116 5.92712 6.04585 6.10148 6.35887 6.84560 7.41610 8.91941 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.029102 B = 0.006963 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.910993 B = 4020.102446 C = 4562.920691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.104 4.104 3 C -0.102 4.102 4 C -0.134 4.134 5 C -0.061 4.061 6 C -0.114 4.114 7 C -0.085 4.085 8 S -0.187 6.187 9 C -0.067 4.067 10 C -0.109 4.109 11 C 0.063 3.937 12 H -0.012 1.012 13 C -0.531 4.531 14 H 0.056 0.944 15 C 0.014 3.986 16 N -0.915 5.915 17 Si 0.954 3.046 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.268 1.268 21 C -0.072 4.072 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.151 0.849 26 H 0.130 0.870 27 H 0.144 0.856 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.262 0.738 33 H 0.068 0.932 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.783 -0.122 6.601 13.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.120 4.120 4 C -0.154 4.154 5 C -0.064 4.064 6 C -0.225 4.225 7 C -0.105 4.105 8 S 0.048 5.952 9 C -0.214 4.214 10 C -0.149 4.149 11 C 0.045 3.955 12 H 0.006 0.994 13 C -0.569 4.569 14 H 0.074 0.926 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.780 3.220 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.193 1.193 21 C -0.109 4.109 22 H 0.102 0.898 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.169 0.831 26 H 0.148 0.852 27 H 0.161 0.839 28 H 0.127 0.873 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.618 -1.072 7.219 13.720 hybrid contribution 1.168 1.305 -1.463 2.282 sum -10.450 0.232 5.756 11.932 Atomic orbital electron populations 1.20788 0.88125 1.03808 1.03385 1.20342 0.97957 0.92058 1.00222 1.21443 0.93369 0.98997 0.98226 1.21473 0.95172 0.97307 1.01415 1.20442 0.96641 0.93263 0.96028 1.21342 0.96494 0.95253 1.09449 1.21440 0.91425 0.99258 0.98415 1.85133 1.59835 1.24380 1.25872 1.23313 1.00164 1.03819 0.94116 1.21086 0.95407 0.95946 1.02444 1.18146 0.94566 0.92277 0.90532 0.99427 1.21610 1.08752 1.27970 0.98542 0.92608 1.25731 1.00585 0.96145 0.96020 1.69977 1.40775 1.39821 1.04897 0.85606 0.80001 0.79193 0.77191 1.20051 1.20977 1.19277 1.21013 0.89562 1.01437 0.98922 0.89831 0.90797 0.90192 0.83089 0.85196 0.83863 0.87328 0.91696 0.94592 0.90561 0.92902 0.91376 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 10.02 71.24 0.71 -1.07 16 2 C -0.10 -2.70 5.89 -19.82 -0.12 -2.82 16 3 C -0.10 -2.78 9.68 22.30 0.22 -2.57 16 4 C -0.13 -4.53 9.66 22.36 0.22 -4.31 16 5 C -0.06 -2.38 4.92 -19.74 -0.10 -2.48 16 6 C -0.11 -4.22 5.61 22.21 0.12 -4.10 16 7 C -0.08 -2.58 9.51 22.40 0.21 -2.36 16 8 S -0.19 -6.94 20.79 -56.49 -1.17 -8.11 16 9 C -0.07 -2.72 6.18 71.49 0.44 -2.27 16 10 C -0.11 -5.25 4.32 29.50 0.13 -5.12 16 11 C 0.06 3.21 1.90 -12.10 -0.02 3.19 16 12 H -0.01 -0.71 7.77 -2.39 -0.02 -0.73 16 13 C -0.53 -29.15 8.41 25.60 0.22 -28.94 16 14 H 0.06 3.00 7.53 -2.91 -0.02 2.98 16 15 C 0.01 0.76 5.21 84.65 0.44 1.20 16 16 N -0.92 -52.27 11.27 21.45 0.24 -52.03 16 17 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 C -0.07 -3.14 4.85 30.10 0.15 -2.99 16 22 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 24 H 0.08 1.14 8.09 -2.38 -0.02 1.12 16 25 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 26 H 0.13 4.12 7.97 -2.91 -0.02 4.09 16 27 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 28 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 29 H 0.06 2.76 8.12 -2.39 -0.02 2.74 16 30 H 0.04 1.71 7.87 -2.38 -0.02 1.69 16 31 H 0.08 4.12 5.60 -2.39 -0.01 4.11 16 32 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.07 2.97 7.05 -2.39 -0.02 2.95 16 34 H 0.06 2.69 7.40 -2.38 -0.02 2.67 16 Total: -1.00 -60.77 285.28 4.79 -55.99 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.08 Total: 13.55 kcal Atomic # 6 Polarization: -57.27 SS G_CDS: 2.62 Total: -54.65 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.24 Total: -52.03 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -6.94 SS G_CDS: -1.17 Total: -8.11 kcal Total: -60.77 4.79 -55.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038076.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.680 kcal (2) G-P(sol) polarization free energy of solvation -60.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds